CaUC02G033610 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTCCGTGTCAACAAACAATTCGAAATGCCTCGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHINRSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK Homology
BLAST of CaUC02G033610 vs. NCBI nr
Match: RZC88934.1 (hypothetical protein C5167_030630 [Papaver somniferum]) HSP 1 Score: 332.4 bits (851), Expect = 2.9e-87 Identity = 176/209 (84.21%), Postives = 176/209 (84.21%), Query Frame = 0
BLAST of CaUC02G033610 vs. NCBI nr
Match: RZC70923.1 (hypothetical protein C5167_034128 [Papaver somniferum]) HSP 1 Score: 283.9 bits (725), Expect = 1.2e-72 Identity = 152/185 (82.16%), Postives = 152/185 (82.16%), Query Frame = 0
BLAST of CaUC02G033610 vs. NCBI nr
Match: BBN70001.1 (Ribosomal protein S7p/S5e family protein, partial [Prunus dulcis]) HSP 1 Score: 267.3 bits (682), Expect = 1.2e-67 Identity = 145/207 (70.05%), Postives = 149/207 (71.98%), Query Frame = 0
BLAST of CaUC02G033610 vs. NCBI nr
Match: RZC64142.1 (hypothetical protein C5167_025901, partial [Papaver somniferum]) HSP 1 Score: 253.1 bits (645), Expect = 2.3e-63 Identity = 138/189 (73.02%), Postives = 144/189 (76.19%), Query Frame = 0
BLAST of CaUC02G033610 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 239.2 bits (609), Expect = 3.4e-59 Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 4.3e-33 Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 5.5e-28 Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy Swiss-Prot
Match: A4QJD9 (30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps12-A PE=3 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy TrEMBL
Match: A0A6N2NH77 (Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS516037 PE=3 SV=1) HSP 1 Score: 291.6 bits (745), Expect = 2.8e-75 Identity = 153/186 (82.26%), Postives = 160/186 (86.02%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy TrEMBL
Match: A0A4Y7KC21 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_034128 PE=3 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 5.8e-73 Identity = 152/185 (82.16%), Postives = 152/185 (82.16%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy TrEMBL
Match: A0A6N2N9X9 (Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS430145 PE=3 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 2.7e-70 Identity = 145/172 (84.30%), Postives = 149/172 (86.63%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy TrEMBL
Match: A0A5H2Y3L6 (Ribosomal protein S7p/S5e family protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_1328S000100 PE=3 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 5.6e-68 Identity = 145/207 (70.05%), Postives = 149/207 (71.98%), Query Frame = 0
BLAST of CaUC02G033610 vs. ExPASy TrEMBL
Match: A0A4Y7JVR4 (Uncharacterized protein (Fragment) OS=Papaver somniferum OX=3469 GN=C5167_025901 PE=3 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 1.1e-63 Identity = 138/189 (73.02%), Postives = 144/189 (76.19%), Query Frame = 0
BLAST of CaUC02G033610 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A ) HSP 1 Score: 122.9 bits (307), Expect = 3.3e-28 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0
BLAST of CaUC02G033610 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B ) HSP 1 Score: 122.9 bits (307), Expect = 3.3e-28 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0
BLAST of CaUC02G033610 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C ) HSP 1 Score: 122.9 bits (307), Expect = 3.3e-28 Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0
BLAST of CaUC02G033610 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 87.4 bits (215), Expect = 1.5e-17 Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 0
BLAST of CaUC02G033610 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 87.4 bits (215), Expect = 1.5e-17 Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|