Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTCGGAAGAAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGGTCCCACTTGTATATTGTATTTGGCCGAAGAAGCATCGGACAGGTTGGAGTTCTTACCTTCTTGGGACTCTATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCGACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCGGATTTGAATGAATTGGAAACATCTCTTTTCCATTTCTATTTACCCAGTTCATATCTTTCTTTCGTGTGTTCCCGGGAGGAATTCGATCTCGGGATACCACCTAAATAA
mRNA sequence
ATGCCATTCGGAAGAAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGGTCCCACTTGTATATTGTATTTGGCCGAAGAAGCATCGGACAGGTTGGAGTTCTTACCTTCTTGGGACTCTATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCGACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCGGATTTGAATGAATTGGAAACATCTCTTTTCCATTTCTATTTACCCAGTTCATATCTTTCTTTCGTGTGTTCCCGGGAGGAATTCGATCTCGGGATACCACCTAAATAA
Coding sequence (CDS)
ATGCCATTCGGAAGAAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTCAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGGTCCCACTTGTATATTGTATTTGGCCGAAGAAGCATCGGACAGGTTGGAGTTCTTACCTTCTTGGGACTCTATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCGACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCGGATTTGAATGAATTGGAAACATCTCTTTTCCATTTCTATTTACCCAGTTCATATCTTTCTTTCGTGTGTTCCCGGGAGGAATTCGATCTCGGGATACCACCTAAATAA
Protein sequence
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCETGKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDVEKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK
Homology
BLAST of CaUC02G033400 vs. NCBI nr
Match:
YP_009913631.1 (ribosomal protein L10 [Luffa acutangula] >QLJ93021.1 ribosomal protein L10 [Luffa acutangula])
HSP 1 Score: 332.4 bits (851), Expect = 2.1e-87
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK 160
EKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK 159
BLAST of CaUC02G033400 vs. NCBI nr
Match:
QEX95855.1 (ribosomal protein L10 [Cercis canadensis])
HSP 1 Score: 320.5 bits (820), Expect = 8.3e-84
Identity = 155/162 (95.68%), Postives = 157/162 (96.91%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCILYLAEEA+DRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEAADRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
EKASD +ELETSLFHFYLPSSYL FVCSREEFD LGIPPK
Sbjct: 121 EKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 162
BLAST of CaUC02G033400 vs. NCBI nr
Match:
YP_009241685.1 (ribosomal protein L10 [Ziziphus jujuba] >AMP43670.1 ribosomal protein L10 [Ziziphus jujuba])
HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 155/162 (95.68%), Postives = 156/162 (96.30%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCI YLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCISYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
EKASD +ELETSLFHFYLPSSYL FVCSREEFD LGIPPK
Sbjct: 121 EKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 162
BLAST of CaUC02G033400 vs. NCBI nr
Match:
YP_009704688.1 (ribosomal protein L10 [Tamarindus indica] >QEX95891.1 ribosomal protein L10 [Tamarindus indica])
HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 155/162 (95.68%), Postives = 156/162 (96.30%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQ ESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQTESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
EKASD +ELETSLFHFYLPSSYL FVCSREEFD LGIPPK
Sbjct: 121 EKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 162
BLAST of CaUC02G033400 vs. NCBI nr
Match:
OVA11595.1 (hypothetical protein BVC80_967g3 [Macleaya cordata])
HSP 1 Score: 317.0 bits (811), Expect = 9.2e-83
Identity = 154/162 (95.06%), Postives = 156/162 (96.30%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCC T
Sbjct: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCGT 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
EKASD +ELETSLFHF+LPSSYL FVCSREEFD LGIPPK
Sbjct: 121 EKASDFDELETSLFHFHLPSSYLCFVCSREEFDLFNLGIPPK 162
BLAST of CaUC02G033400 vs. ExPASy Swiss-Prot
Match:
P38450 (Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha OX=3197 GN=YMF1 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 0
Query: 19 EERSPEILISFHSSGSTSNQWRKLKN--PWFPGRTPFRPSCCETGKKKR---------FF 78
+++ P IL+ FH SG TS QWR++KN G+T F+P +KK+ +
Sbjct: 24 KKQYPYILL-FHCSGLTSRQWRQIKNILCTIKGKTLFKPK-----EKKQNILPNNQGDWI 83
Query: 79 AQLAHSAGPTCILYLAEEASDRL--EFLPSWDSMDQDLLSLYGQYRSTLVDHMDVEKASD 138
AQLA SAGPTCILYLA+EA + + LPS S Q+L+ LYGQ RST+ +HMD++KA+
Sbjct: 84 AQLASSAGPTCILYLAKEAPNNTWSQLLPS-ASYSQNLVLLYGQDRSTVFNHMDIKKATT 143
Query: 139 LNELETSLFHFYLPSSYLSFVC 148
L TS+F +L C
Sbjct: 144 LE--TTSVFQQLFGFMFLPGAC 156
BLAST of CaUC02G033400 vs. ExPASy TrEMBL
Match:
A0A7D5Y0N6 (Ribosomal protein L10 OS=Luffa acutangula OX=56866 GN=rpl10 PE=4 SV=1)
HSP 1 Score: 332.4 bits (851), Expect = 1.0e-87
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK 160
EKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK
Sbjct: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFDLGIPPK 159
BLAST of CaUC02G033400 vs. ExPASy TrEMBL
Match:
A0A5J6NGS1 (Ribosomal protein L10 OS=Cercis canadensis OX=49801 GN=rpl10 PE=4 SV=1)
HSP 1 Score: 320.5 bits (820), Expect = 4.0e-84
Identity = 155/162 (95.68%), Postives = 157/162 (96.91%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCILYLAEEA+DRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEAADRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
EKASD +ELETSLFHFYLPSSYL FVCSREEFD LGIPPK
Sbjct: 121 EKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 162
BLAST of CaUC02G033400 vs. ExPASy TrEMBL
Match:
A0A142BZ26 (Ribosomal protein L10 OS=Ziziphus jujuba OX=326968 GN=rpl10 PE=4 SV=1)
HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 155/162 (95.68%), Postives = 156/162 (96.30%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCI YLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCISYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
EKASD +ELETSLFHFYLPSSYL FVCSREEFD LGIPPK
Sbjct: 121 EKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 162
BLAST of CaUC02G033400 vs. ExPASy TrEMBL
Match:
A0A5J6NHS2 (Ribosomal protein L10 OS=Tamarindus indica OX=58860 GN=rpl10 PE=4 SV=1)
HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 155/162 (95.68%), Postives = 156/162 (96.30%), Query Frame = 0
Query: 1 MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
MPFGRSLLQ ESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET
Sbjct: 1 MPFGRSLLQTESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCET 60
Query: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV
Sbjct: 61 GKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMDV 120
Query: 121 EKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
EKASD +ELETSLFHFYLPSSYL FVCSREEFD LGIPPK
Sbjct: 121 EKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 162
BLAST of CaUC02G033400 vs. ExPASy TrEMBL
Match:
A0A5J6NGY3 (Ribosomal protein L10 OS=Haematoxylum brasiletto OX=191923 GN=rpl10 PE=4 SV=1)
HSP 1 Score: 317.0 bits (811), Expect = 4.5e-83
Identity = 156/163 (95.71%), Postives = 157/163 (96.32%), Query Frame = 0
Query: 1 MPFGRSLLQRE-SLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCE 60
MPFGRSLLQRE SLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCE
Sbjct: 1 MPFGRSLLQRESSLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCE 60
Query: 61 TGKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMD 120
TGKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMD
Sbjct: 61 TGKKKRFFAQLAHSAGPTCILYLAEEASDRLEFLPSWDSMDQDLLSLYGQYRSTLVDHMD 120
Query: 121 VEKASDLNELETSLFHFYLPSSYLSFVCSREEFD---LGIPPK 160
VEKASD +ELETSLFHFYLPSSYL FVCSREEFD LGIPPK
Sbjct: 121 VEKASDFDELETSLFHFYLPSSYLCFVCSREEFDLFNLGIPPK 163
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
YP_009913631.1 | 2.1e-87 | 100.00 | ribosomal protein L10 [Luffa acutangula] >QLJ93021.1 ribosomal protein L10 [Luff... | [more] |
QEX95855.1 | 8.3e-84 | 95.68 | ribosomal protein L10 [Cercis canadensis] | [more] |
YP_009241685.1 | 1.9e-83 | 95.68 | ribosomal protein L10 [Ziziphus jujuba] >AMP43670.1 ribosomal protein L10 [Zizip... | [more] |
YP_009704688.1 | 1.9e-83 | 95.68 | ribosomal protein L10 [Tamarindus indica] >QEX95891.1 ribosomal protein L10 [Tam... | [more] |
OVA11595.1 | 9.2e-83 | 95.06 | hypothetical protein BVC80_967g3 [Macleaya cordata] | [more] |
Match Name | E-value | Identity | Description | |
P38450 | 2.7e-16 | 42.96 | Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha OX=3197 GN=Y... | [more] |
Match Name | E-value | Identity | Description | |
A0A7D5Y0N6 | 1.0e-87 | 100.00 | Ribosomal protein L10 OS=Luffa acutangula OX=56866 GN=rpl10 PE=4 SV=1 | [more] |
A0A5J6NGS1 | 4.0e-84 | 95.68 | Ribosomal protein L10 OS=Cercis canadensis OX=49801 GN=rpl10 PE=4 SV=1 | [more] |
A0A142BZ26 | 9.0e-84 | 95.68 | Ribosomal protein L10 OS=Ziziphus jujuba OX=326968 GN=rpl10 PE=4 SV=1 | [more] |
A0A5J6NHS2 | 9.0e-84 | 95.68 | Ribosomal protein L10 OS=Tamarindus indica OX=58860 GN=rpl10 PE=4 SV=1 | [more] |
A0A5J6NGY3 | 4.5e-83 | 95.71 | Ribosomal protein L10 OS=Haematoxylum brasiletto OX=191923 GN=rpl10 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |