CaUC02G031680 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G031680
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein TIC 62, chloroplastic
Location	Ciama_Chr02: 6092348 .. 6094703 (-)
RNA-Seq Expression	CaUC02G031680
Synteny	CaUC02G031680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAGCTATGATTCCTAAAAAAAGAAATAAAAGAACTCATAAGTTATGAAATTATTTGCTGGTCTGCTTTACGGAGTTGGGGATAGATGAAAATCCAAATGGGTGTTTACAGTTCTTCACAGGCCAGAAATGGAACCTTCTTTGGGACCCATCATATCCACATGCTGTGGATTGTGGACGATGCCATTGCTGCCAACGCCAAGCTGAGGAACTAGTAACTTCTCATCCTTTCTTACACAACAATTTATAATTTTAATTCAATTCCTAAATCTGCCCTTCTTCAAATTACTTTATGATTTGAGCATTTCAAAAATTTCTGGTGGTGCACTGAACAGGACACAAATTCTCTTCAATGGAGTGTACTTGCAGTTCTCTGCGGTCACCGGCTTTAACCACAGTGCCTTCCTCTTTATCTAGAACTGGGTTCTCAGACAAGCCATTGTTGAATGCTCAACCCCTGAAATTATCGAATAAGAAAACATACCCACTTGCAGGAAGGCTCAAATTTCTTCACATCAGAGCTCAAGCTTCTTCCAGTATGGATCAATGTTCTTGTTGGTTTTCGTTTATTGATTCTTCTGTGTTTGAGTTCACTTCTGCATTTGATTTACTCATTATTTTGAACTCACTGTAAGCTTGATTTGTTTGTTTGTTTTTGTTTTGAGGGTTTTTCTGTTGGAATTCTTAGGTAGAAGTAGAAATAGGTGGGTTGGATCAAGGTAGAGCAATTTTCATTTATGTGAAGATATGAATGTAATCTTTTCAAGAAAAGAAAAGAGATAGAAAAACGATTTGGATATCCAATTTCTGAGAAAGGATGAAACTATGCATGGGTTTCTTCATATGGCTCTTATTTGCTCCCATTCTGAATTCTTCTGGTAGGCATTTGAAGTGAGTGTATAAATCTTTAATGATCTTGTTGGTTGTTTTTTGTGTACTATGATATGATATTAGCAGAATAATTGACCAGCAGCCTTGATGTTCTTGTAACCTCCAGTAGCCTTGCAAGCATAATTCTTCGTCTTTGGTAGATACCAATTGATAGCTGGTAGAGATGGATAGAAATATTGAAAATGATAGAAGAAACTTGGTCCCTGTTTCATTGTTAAATTTCAAGATAGCAGTTTCATTATAGTTTTGTTAATATAACGGTAAGCTATATTTGTATGGTTTGTGATATTATGGAAATTGTATCCATATAGTACTTTTTAACAATGTTTTTAAACATCCTCCTGATTTTGTGGAAATCACACATAGTACTTTTTAAGTTGAATTTTATAGTTTGTTTACTGCAATTGATAAACATGACTTAGCCTATACTTACAACTTTTTAATGTAAAATCATGATTGGTAGATTTCACCTATCATGGAGGTGTTTATGCTTTTCTCAAAGTTCAGGTCTGCAAATCACAGAAGCTGTATTTTGCAATTATCATCCAAGCAGATGGTTATTACTTCTTCCTTGCAGTTTGTAGCTCACATTTCTTGATTTTGACAAGGCACAAGCAATGTTAGCTCAGAGGCAGCTCCAGCAATTTCAAAGAAGGAAGATTCGAAGGACAAGGATCTTGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTGAGGTAAGTTTAATCTTTTGCTTCGTATTGGAACAACTCATCTTTCCAGCTGATCTCTGCATGCTATATGCTAAAGAGCTGTGAAATCCTAACCAGGGAGCTTTTGAAACTTGGATTCCGTGTAAGAGCTGGTGTAAGGAGTTCTCAGAAAGCTGAAACTCTTGTTGAGGTAAAAGCATTTGACTATTTATAAAAACATTTCACCACCATTTTTGAGTAACAGCTTGTTTTTGATAAAAACTTCATCTAATGCAGAGTGTTAAAAAGATTAAGCTTGATGAAGGTAATGCAAGTGCCAAAAGTCCCCCCAAACCCCACCCTGATACCCATAGCATCTGTTTTCTCTTGTATCTACTTGTCAAAAATGTCAAGGGAACACTTGATATTCTTGAGCAAAAAAACTTCCAAGAAAATAACAGATAGTTTTTGGTCTTTAGCCCAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAAACCAAACCAGATTGGACCTGCATTAGGGAATGCATCAATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATTACTGGACCTTATCGAATTGACTATCTGGCTACCAAAAACTTGGTTGAAGCAGGTAAGAAGATGCTTTTTGGGTGATTTTTAATTTTTCTTTTTAAATCCTAAAACATAGCTGAAATTGGAATACTATGGTTCTCTTCATTTGAAATATACCTTCCAAGAGGCAAGAAAATTTAA

mRNA sequence

CATAAGCTATGATTCCTAAAAAAAGAAATAAAAGAACTCATAAGTTATGAAATTATTTGCTGGTCTGCTTTACGGAGTTGGGGATAGATGAAAATCCAAATGGGTGTTTACAGTTCTTCACAGGCCAGAAATGGAACCTTCTTTGGGACCCATCATATCCACATGCTGTGGATTGTGGACGATGCCATTGCTGCCAACGCCAAGCTGAGGAACTATTCTCTGCGGTCACCGGCTTTAACCACAGTGCCTTCCTCTTTATCTAGAACTGGGTTCTCAGACAAGCCATTGTTGAATGCTCAACCCCTGAAATTATCGAATAAGAAAACATACCCACTTGCAGGAAGGCTCAAATTTCTTCACATCAGAGCTCAAGCTTCTTCCAGTATGGATCAATGTTCTTGTTGGTTTTCGTTTATTGATTCTTCTGTGTTTGAGTTCACTTCTGCATTTGATTTACTCATTATTTTGAACTCACTTTTTGTTAATATAACGGTCTGCAAATCACAGAAGCTGTATTTTGCAATTATCATCCAAGCAGATGGCACAAGCAATGTTAGCTCAGAGGCAGCTCCAGCAATTTCAAAGAAGGAAGATTCGAAGGACAAGGATCTTGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTGAGGGAGCTTTTGAAACTTGGATTCCGTGTAAGAGCTGGTGTAAGGAGTTCTCAGAAAGCTGAAACTCTTGTTGAGAGTGTTAAAAAGATTAAGCTTGATGAAGGTAATGCAAGTGCCAAAAGTCCCCCCAAACCCCACCCTGATACCCATAGCATCTGTTTTCTCTTCCCAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAAACCAAACCAGATTGGACCTGCATTAGGGAATGCATCAATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATTACTGGACCTTATCGAATTGACTATCTGGCTACCAAAAACTTGGTTGAAGCAGCTGAAATTGGAATACTATGGTTCTCTTCATTTGAAATATACCTTCCAAGAGGCAAGAAAATTTAA

Coding sequence (CDS)

ATGAAAATCCAAATGGGTGTTTACAGTTCTTCACAGGCCAGAAATGGAACCTTCTTTGGGACCCATCATATCCACATGCTGTGGATTGTGGACGATGCCATTGCTGCCAACGCCAAGCTGAGGAACTATTCTCTGCGGTCACCGGCTTTAACCACAGTGCCTTCCTCTTTATCTAGAACTGGGTTCTCAGACAAGCCATTGTTGAATGCTCAACCCCTGAAATTATCGAATAAGAAAACATACCCACTTGCAGGAAGGCTCAAATTTCTTCACATCAGAGCTCAAGCTTCTTCCAGTATGGATCAATGTTCTTGTTGGTTTTCGTTTATTGATTCTTCTGTGTTTGAGTTCACTTCTGCATTTGATTTACTCATTATTTTGAACTCACTTTTTGTTAATATAACGGTCTGCAAATCACAGAAGCTGTATTTTGCAATTATCATCCAAGCAGATGGCACAAGCAATGTTAGCTCAGAGGCAGCTCCAGCAATTTCAAAGAAGGAAGATTCGAAGGACAAGGATCTTGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTGAGGGAGCTTTTGAAACTTGGATTCCGTGTAAGAGCTGGTGTAAGGAGTTCTCAGAAAGCTGAAACTCTTGTTGAGAGTGTTAAAAAGATTAAGCTTGATGAAGGTAATGCAAGTGCCAAAAGTCCCCCCAAACCCCACCCTGATACCCATAGCATCTGTTTTCTCTTCCCAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAAACCAAACCAGATTGGACCTGCATTAGGGAATGCATCAATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATTACTGGACCTTATCGAATTGACTATCTGGCTACCAAAAACTTGGTTGAAGCAGCTGAAATTGGAATACTATGGTTCTCTTCATTTGAAATATACCTTCCAAGAGGCAAGAAAATTTAA

Protein sequence

MKIQMGVYSSSQARNGTFFGTHHIHMLWIVDDAIAANAKLRNYSLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQCSCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPAISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLDEGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASEKEIFDITGPYRIDYLATKNLVEAAEIGILWFSSFEIYLPRGKKI

Homology

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BLAST of CaUC02G031680 vs. NCBI nr
Match: XP_038887687.1 (protein TIC 62, chloroplastic [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-74
Identity = 173/266 (65.04%), Postives = 183/266 (68.80%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSLSRTGFS+KPLL+   LKLSNKK+YPLAGRLKFLHIRAQASSS    
Sbjct: 7   SLRSPALTTVPSSLSRTGFSEKPLLH---LKLSNKKSYPLAGRLKFLHIRAQASSS---- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SSEA PA
Sbjct: 67  -------------------------------------------------TSNFSSEAGPA 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSKD+DLVFVAGATG+VGSRTVRELLKLGFRVRAGVR+SQKAETLVE+VK+IKLD
Sbjct: 127 ISKKEDSKDEDLVFVAGATGRVGSRTVRELLKLGFRVRAGVRNSQKAETLVENVKRIKLD 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 187 E-----------------------AVEKLETVVCDLEKPNQIGSAIGNASIVICCIGASE 193

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 193

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BLAST of CaUC02G031680 vs. NCBI nr
Match: XP_016901735.1 (PREDICTED: protein TIC 62, chloroplastic [Cucumis melo] >XP_016901736.1 PREDICTED: protein TIC 62, chloroplastic [Cucumis melo] >TYK06705.1 protein TIC 62 [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 1.9e-74
Identity = 172/266 (64.66%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSL RT F +K LLNAQPLK SNKKTYPLAG LKFLH RAQASSS    
Sbjct: 7   SLRSPALTTVPSSLVRTAFLEKSLLNAQPLKFSNKKTYPLAGTLKFLHPRAQASSS---- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SSEAAP 
Sbjct: 67  -------------------------------------------------TSNFSSEAAPT 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSK++DLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETL+ESVKKI LD
Sbjct: 127 ISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIESVKKINLD 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 187 E-----------------------AVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASE 196

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 196

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BLAST of CaUC02G031680 vs. NCBI nr
Match: XP_004137007.1 (protein TIC 62, chloroplastic [Cucumis sativus] >KGN43983.1 hypothetical protein Csa_017708 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 8.0e-73
Identity = 169/266 (63.53%), Postives = 177/266 (66.54%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SL SPALTTVPSSL RT F +K +LNAQPLKLSNKKT+PL GRLKFLH RAQASSS    
Sbjct: 40  SLGSPALTTVPSSLVRTAFLEKSVLNAQPLKLSNKKTFPLPGRLKFLHTRAQASSS---- 99

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SS AAP 
Sbjct: 100 -------------------------------------------------TSNFSSGAAPT 159

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSK++DLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETL+ESVKKI LD
Sbjct: 160 ISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIESVKKINLD 219

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 220 E-----------------------AVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASE 229

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 280 KEIFDITGPYRIDYLATKNLVEAATV 229

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BLAST of CaUC02G031680 vs. NCBI nr
Match: XP_022136225.1 (protein TIC 62, chloroplastic [Momordica charantia])

HSP 1 Score: 283.5 bits (724), Expect = 2.3e-72
Identity = 166/266 (62.41%), Postives = 177/266 (66.54%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSLSR+GF DKPLL  Q LKLSNKKTYP AGRLKFLH+RAQASS     
Sbjct: 7   SLRSPALTTVPSSLSRSGFIDKPLLQGQALKLSNKKTYPFAGRLKFLHVRAQASS----- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            T+N+S EAA A
Sbjct: 67  -------------------------------------------------TNNLSLEAAAA 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           I KKED KD+DLVFVAGATG+VGSRTVRELLKLGFRVRAGVRSSQK +TL ESVK+IKLD
Sbjct: 127 IPKKEDLKDEDLVFVAGATGRVGSRTVRELLKLGFRVRAGVRSSQKGKTLAESVKQIKLD 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKP+QIGPA+GNASIVICCIGASE
Sbjct: 187 E-----------------------AVEKLETVVCDLEKPDQIGPAIGNASIVICCIGASE 195

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 195

[Close]

BLAST of CaUC02G031680 vs. NCBI nr
Match: KAA0031254.1 (protein TIC 62 [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 2.2e-70
Identity = 165/266 (62.03%), Postives = 171/266 (64.29%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSL RT F +K LLNAQPLK SNKKTYPLAG LKFLH RAQASSS    
Sbjct: 7   SLRSPALTTVPSSLVRTAFLEKSLLNAQPLKFSNKKTYPLAGTLKFLHPRAQASSS---- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SSEAAP 
Sbjct: 67  -------------------------------------------------TSNFSSEAAPT 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSK++DLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETL+E        
Sbjct: 127 ISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIE-------- 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
                                  PAVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 187 ------------------FLVFSPAVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASE 193

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 193

[Close]

BLAST of CaUC02G031680 vs. ExPASy Swiss-Prot
Match: Q8SKU2 (Protein TIC 62, chloroplastic OS=Pisum sativum OX=3888 GN=TIC62 PE=1 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 7.3e-45
Identity = 119/260 (45.77%), Postives = 144/260 (55.38%), Query Frame = 0


Query: 51  TTVPSSLSRTG-FSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQCSCWFSF 110
           T +PS+L+R    +DKP  +    K S+   YPL   L    IR+ +SSS          
Sbjct: 11  TAIPSTLTRRDTAADKPSPHLNLSKYSHFMRYPLTTTLTNNRIRSSSSSSSS-------- 70

Query: 111 IDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPAISKKED 170
                                                 I+A  + +  S  A  I +K D
Sbjct: 71  --------------------------------------IRAQASGSTKSSTAEGIPEKTD 130

Query: 171 SKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLDEGNASA 230
           SKD +LVFVAGATGKVGSRTVREL+KLGF+VRAGVR++QKA  LV+SVK++KLD  +   
Sbjct: 131 SKDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGVRNAQKAGALVQSVKQLKLDGASGGG 190

Query: 231 KSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASEKEIFDI 290
           +                 AVEKLE V CDLEK +QIG ALGNAS VIC IGASEKEIFDI
Sbjct: 191 E-----------------AVEKLEIVECDLEKADQIGSALGNASTVICAIGASEKEIFDI 207

Query: 291 TGPYRIDYLATKNLVEAAEI 310
           TGP RIDY ATKNLV+AA +
Sbjct: 251 TGPCRIDYRATKNLVDAATV 207

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BLAST of CaUC02G031680 vs. ExPASy Swiss-Prot
Match: Q8H0U5 (Protein TIC 62, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC62 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-43
Identity = 101/164 (61.59%), Postives = 118/164 (71.95%), Query Frame = 0


Query: 144 FAIIIQADGTSNVSSEAAPAISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAG 203
           F + ++A G    SS    A     +SK++DLVFVAGATGKVGSRTVRELLKLGFRVRAG
Sbjct: 52  FDLSLRASGPIRASSVVTEASPTNLNSKEEDLVFVAGATGKVGSRTVRELLKLGFRVRAG 111

Query: 204 VRSSQKAETLVESVKKIKLDEGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPN 263
           VRS+Q+A +LV+SVK++KL   N    + P               VEKLE V CDLEK +
Sbjct: 112 VRSAQRAGSLVQSVKEMKLQ--NTDEGTQP---------------VEKLEIVECDLEKKD 171

Query: 264 QIGPALGNASIVICCIGASEKEIFDITGPYRIDYLATKNLVEAA 308
            I PALGNAS++ICCIGASEKEI DITGPYRIDYLATKNLV+AA
Sbjct: 172 SIQPALGNASVIICCIGASEKEISDITGPYRIDYLATKNLVDAA 198

[Close]

BLAST of CaUC02G031680 vs. ExPASy Swiss-Prot
Match: Q10A77 (Protein TIC 62, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TIC62 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-36
Identity = 85/153 (55.56%), Postives = 110/153 (71.90%), Query Frame = 0


Query: 157 SSEAAPAISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVES 216
           ++ AA A  + + +K+ DLVF+AGATGKVGSR VRE +KLGFRVRAGVRS+Q+A +LV+S
Sbjct: 56  AAAAAAATPESKSTKENDLVFIAGATGKVGSRAVREFIKLGFRVRAGVRSAQRASSLVQS 115

Query: 217 VKKIKLDEGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQ--IGPALGNASI 276
           V+++K+D+    A SP                 E+LE V CDLEK  Q  I  A+GNA+I
Sbjct: 116 VEQLKVDD---DATSP----------------AERLEIVECDLEKQAQSDIVSAIGNAAI 175

Query: 277 VICCIGASEKEIFDITGPYRIDYLATKNLVEAA 308
           V+C IGASEK+I D+TGPYRIDY+AT NLV+AA
Sbjct: 176 VVCSIGASEKDILDVTGPYRIDYMATNNLVQAA 189

[Close]

BLAST of CaUC02G031680 vs. ExPASy Swiss-Prot
Match: Q8H124 (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.2e-08
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 0


Query: 176 VFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLDEGNASAKSPPKP 235
           VFVAGATG+ G R V +LL  GF V+AGVR  +KA+T               S K  P  
Sbjct: 49  VFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKT---------------SFKDDP-- 108

Query: 236 HPDTHSICFLFPAVEKLETVVCDL-EKPNQIGPALGNAS-IVICCIGASEKEIFDITGPY 295
                           L+ V  D+ E P+++   +G+ S  VIC  G   +  FDI  P+
Sbjct: 109 ---------------SLQIVRADVTEGPDKLAEVIGDDSQAVICATGF--RPGFDIFTPW 147

Query: 296 RIDYLATKNLVEA 307
           ++D   T NLV+A
Sbjct: 169 KVDNFGTVNLVDA 147

[Close]

BLAST of CaUC02G031680 vs. ExPASy Swiss-Prot
Match: Q9STF2 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC16 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.5e-05
Identity = 35/113 (30.97%), Postives = 50/113 (44.25%), Query Frame = 0


Query: 171 KDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLDEGNASAK 230
           KD   +FVAGATG+ G R  + LL+ GF VRAGV     A+ L       K+   +    
Sbjct: 89  KDPGTIFVAGATGQAGIRIAQTLLQRGFSVRAGVPDLGAAQDLARVAATYKILSND---- 148

Query: 231 SPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 284
                             V++L  V    +    I  A+GNA+ V+  +GA+E
Sbjct: 149 -----------------EVKRLNAVQSPFQDAESIAKAIGNATKVVVTVGATE 180

[Close]

BLAST of CaUC02G031680 vs. ExPASy TrEMBL
Match: A0A1S4E0I3 (protein TIC 62, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495191 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 9.2e-75
Identity = 172/266 (64.66%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSL RT F +K LLNAQPLK SNKKTYPLAG LKFLH RAQASSS    
Sbjct: 7   SLRSPALTTVPSSLVRTAFLEKSLLNAQPLKFSNKKTYPLAGTLKFLHPRAQASSS---- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SSEAAP 
Sbjct: 67  -------------------------------------------------TSNFSSEAAPT 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSK++DLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETL+ESVKKI LD
Sbjct: 127 ISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIESVKKINLD 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 187 E-----------------------AVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASE 196

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 196

[Close]

BLAST of CaUC02G031680 vs. ExPASy TrEMBL
Match: A0A5D3C5Q2 (Protein TIC 62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00060 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 9.2e-75
Identity = 172/266 (64.66%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSL RT F +K LLNAQPLK SNKKTYPLAG LKFLH RAQASSS    
Sbjct: 7   SLRSPALTTVPSSLVRTAFLEKSLLNAQPLKFSNKKTYPLAGTLKFLHPRAQASSS---- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SSEAAP 
Sbjct: 67  -------------------------------------------------TSNFSSEAAPT 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSK++DLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETL+ESVKKI LD
Sbjct: 127 ISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIESVKKINLD 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 187 E-----------------------AVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASE 196

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 196

[Close]

BLAST of CaUC02G031680 vs. ExPASy TrEMBL
Match: A0A0A0K3D2 (NAD(P)-bd_dom domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G075630 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 169/266 (63.53%), Postives = 177/266 (66.54%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SL SPALTTVPSSL RT F +K +LNAQPLKLSNKKT+PL GRLKFLH RAQASSS    
Sbjct: 40  SLGSPALTTVPSSLVRTAFLEKSVLNAQPLKLSNKKTFPLPGRLKFLHTRAQASSS---- 99

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SS AAP 
Sbjct: 100 -------------------------------------------------TSNFSSGAAPT 159

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSK++DLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETL+ESVKKI LD
Sbjct: 160 ISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIESVKKINLD 219

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 220 E-----------------------AVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASE 229

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 280 KEIFDITGPYRIDYLATKNLVEAATV 229

[Close]

BLAST of CaUC02G031680 vs. ExPASy TrEMBL
Match: A0A6J1C3A6 (protein TIC 62, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007973 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 166/266 (62.41%), Postives = 177/266 (66.54%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSLSR+GF DKPLL  Q LKLSNKKTYP AGRLKFLH+RAQASS     
Sbjct: 7   SLRSPALTTVPSSLSRSGFIDKPLLQGQALKLSNKKTYPFAGRLKFLHVRAQASS----- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            T+N+S EAA A
Sbjct: 67  -------------------------------------------------TNNLSLEAAAA 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           I KKED KD+DLVFVAGATG+VGSRTVRELLKLGFRVRAGVRSSQK +TL ESVK+IKLD
Sbjct: 127 IPKKEDLKDEDLVFVAGATGRVGSRTVRELLKLGFRVRAGVRSSQKGKTLAESVKQIKLD 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
           E                       AVEKLETVVCDLEKP+QIGPA+GNASIVICCIGASE
Sbjct: 187 E-----------------------AVEKLETVVCDLEKPDQIGPAIGNASIVICCIGASE 195

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 195

[Close]

BLAST of CaUC02G031680 vs. ExPASy TrEMBL
Match: A0A5A7SJD8 (Protein TIC 62 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00060 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 165/266 (62.03%), Postives = 171/266 (64.29%), Query Frame = 0


Query: 44  SLRSPALTTVPSSLSRTGFSDKPLLNAQPLKLSNKKTYPLAGRLKFLHIRAQASSSMDQC 103
           SLRSPALTTVPSSL RT F +K LLNAQPLK SNKKTYPLAG LKFLH RAQASSS    
Sbjct: 7   SLRSPALTTVPSSLVRTAFLEKSLLNAQPLKFSNKKTYPLAGTLKFLHPRAQASSS---- 66

Query: 104 SCWFSFIDSSVFEFTSAFDLLIILNSLFVNITVCKSQKLYFAIIIQADGTSNVSSEAAPA 163
                                                            TSN SSEAAP 
Sbjct: 67  -------------------------------------------------TSNFSSEAAPT 126

Query: 164 ISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLD 223
           ISKKEDSK++DLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETL+E        
Sbjct: 127 ISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIE-------- 186

Query: 224 EGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 283
                                  PAVEKLETVVCDLEKPNQIG A+GNASIVICCIGASE
Sbjct: 187 ------------------FLVFSPAVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASE 193

Query: 284 KEIFDITGPYRIDYLATKNLVEAAEI 310
           KEIFDITGPYRIDYLATKNLVEAA +
Sbjct: 247 KEIFDITGPYRIDYLATKNLVEAATV 193

[Close]

BLAST of CaUC02G031680 vs. TAIR 10
Match: AT3G18890.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 178.7 bits (452), Expect = 7.5e-45
Identity = 101/164 (61.59%), Postives = 118/164 (71.95%), Query Frame = 0


Query: 144 FAIIIQADGTSNVSSEAAPAISKKEDSKDKDLVFVAGATGKVGSRTVRELLKLGFRVRAG 203
           F + ++A G    SS    A     +SK++DLVFVAGATGKVGSRTVRELLKLGFRVRAG
Sbjct: 52  FDLSLRASGPIRASSVVTEASPTNLNSKEEDLVFVAGATGKVGSRTVRELLKLGFRVRAG 111

Query: 204 VRSSQKAETLVESVKKIKLDEGNASAKSPPKPHPDTHSICFLFPAVEKLETVVCDLEKPN 263
           VRS+Q+A +LV+SVK++KL   N    + P               VEKLE V CDLEK +
Sbjct: 112 VRSAQRAGSLVQSVKEMKLQ--NTDEGTQP---------------VEKLEIVECDLEKKD 171

Query: 264 QIGPALGNASIVICCIGASEKEIFDITGPYRIDYLATKNLVEAA 308
            I PALGNAS++ICCIGASEKEI DITGPYRIDYLATKNLV+AA
Sbjct: 172 SIQPALGNASVIICCIGASEKEISDITGPYRIDYLATKNLVDAA 198

[Close]

BLAST of CaUC02G031680 vs. TAIR 10
Match: AT2G34460.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-09
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 0


Query: 176 VFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLDEGNASAKSPPKP 235
           VFVAGATG+ G R V +LL  GF V+AGVR  +KA+T               S K  P  
Sbjct: 49  VFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKT---------------SFKDDP-- 108

Query: 236 HPDTHSICFLFPAVEKLETVVCDL-EKPNQIGPALGNAS-IVICCIGASEKEIFDITGPY 295
                           L+ V  D+ E P+++   +G+ S  VIC  G   +  FDI  P+
Sbjct: 109 ---------------SLQIVRADVTEGPDKLAEVIGDDSQAVICATGF--RPGFDIFTPW 147

Query: 296 RIDYLATKNLVEA 307
           ++D   T NLV+A
Sbjct: 169 KVDNFGTVNLVDA 147

[Close]

BLAST of CaUC02G031680 vs. TAIR 10
Match: AT3G46780.1 (plastid transcriptionally active 16 )

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-06
Identity = 35/113 (30.97%), Postives = 50/113 (44.25%), Query Frame = 0


Query: 171 KDKDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKIKLDEGNASAK 230
           KD   +FVAGATG+ G R  + LL+ GF VRAGV     A+ L       K+   +    
Sbjct: 89  KDPGTIFVAGATGQAGIRIAQTLLQRGFSVRAGVPDLGAAQDLARVAATYKILSND---- 148

Query: 231 SPPKPHPDTHSICFLFPAVEKLETVVCDLEKPNQIGPALGNASIVICCIGASE 284
                             V++L  V    +    I  A+GNA+ V+  +GA+E
Sbjct: 149 -----------------EVKRLNAVQSPFQDAESIAKAIGNATKVVVTVGATE 180

The following BLAST results are available for this feature:

BLAST of CaUC02G031680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887687.1	1.1e-74	65.04	protein TIC 62, chloroplastic [Benincasa hispida]	[more]
XP_016901735.1	1.9e-74	64.66	PREDICTED: protein TIC 62, chloroplastic [Cucumis melo] >XP_016901736.1 PREDICTE...	[more]
XP_004137007.1	8.0e-73	63.53	protein TIC 62, chloroplastic [Cucumis sativus] >KGN43983.1 hypothetical protein...	[more]
XP_022136225.1	2.3e-72	62.41	protein TIC 62, chloroplastic [Momordica charantia]	[more]
KAA0031254.1	2.2e-70	62.03	protein TIC 62 [Cucumis melo var. makuwa]	[more]

BLAST of CaUC02G031680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8SKU2	7.3e-45	45.77	Protein TIC 62, chloroplastic OS=Pisum sativum OX=3888 GN=TIC62 PE=1 SV=2	[more]
Q8H0U5	1.1e-43	61.59	Protein TIC 62, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC62 PE=1 SV=1	[more]
Q10A77	2.1e-36	55.56	Protein TIC 62, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TIC62 ...	[more]
Q8H124	7.2e-08	35.34	Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9STF2	2.5e-05	30.97	Protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic OS=Arabidopsis thalia...	[more]

BLAST of CaUC02G031680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0I3	9.2e-75	64.66	protein TIC 62, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495191 PE=4 SV=1	[more]
A0A5D3C5Q2	9.2e-75	64.66	Protein TIC 62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00060 ...	[more]
A0A0A0K3D2	3.9e-73	63.53	NAD(P)-bd_dom domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G0756...	[more]
A0A6J1C3A6	1.1e-72	62.41	protein TIC 62, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007973 PE=...	[more]
A0A5A7SJD8	1.1e-70	62.03	Protein TIC 62 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00060...	[more]

BLAST of CaUC02G031680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18890.1	7.5e-45	61.59	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT2G34460.1	5.1e-09	35.34	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT3G46780.1	1.8e-06	30.97	plastid transcriptionally active 16	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016040	NAD(P)-binding domain	PFAM	PF13460	NAD_binding_10	coord: 180..225 e-value: 9.7E-7 score: 28.8
None	No IPR available	GENE3D	3.40.50.720		coord: 155..310 e-value: 7.5E-23 score: 82.9
IPR044719	Protein TIC 62-like	PANTHER	PTHR47285	PROTEIN TIC 62, CHLOROPLASTIC	coord: 43..308
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 175..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G031680.1	CaUC02G031680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane