CaUC02G030240 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G030240
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 4280511 .. 4284451 (+)
RNA-Seq ExpressionCaUC02G030240
SyntenyCaUC02G030240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACTTTGTTATCTCCAGCAAGGAGTCTCTTACGTCATCTGCTTGAACCATTTCACTGTCTTTTTTCTGCCACCAAAATGTTACTCATGAAAAGTGATTATTGAATCTTTGCACCACACCCTAAGAAGCACGGACACTTTAGTTTGGCCAGCATGCCCGTTTTCGACACATTTCAACACTTGGACACTTGTTGGACATGTAATAGATACTTGTTAGTGTAATAGATGTGTTTGACACTAGTTGTTCAAAGTCAAAATAGAACCAACATTTGTTAAACTTGCATCAAATGCTTATTACATATACTAAATAGATACGTATATAATAAAAATAATAAAATTTGATAGCAAAATACATCAAACTAATTTTTTAAGCATATAAAAGCATAAACTTATTGAGTTTGAATTTCGTTCTTGTTTAAAAATTGTTGTGTTGTATCCGTTTTTGTATCCGTATCCGTAGTTTTTAGGTTACAGCTTATACGATAGTTCTGAGAAACTTTTTATTTGTTTGAATGACTTGCTTGTTTGTTTAATTGTTTGGATTTGTAGTAAGTATGCAAATGTTCGACAGATGAAAACTTTGCTTACCCCAACTTTGAAAACATTAGATACGAGGCCTCTATAGCTGGTCACGTTTGCATTTGTTACTTCCAAGCCAAGAGCATTTAAGGCCTCCATTAGCCTCATAAACCCACCTCGCTTGTTCTCGCAAAAAACCTTTACAAAGAACTCGTTCCCATCAATCTGTGCCACTTCCACTTGCGGCTGCAATTATTTAATTTCACTTCTGTTTTAGCATCTGTAGTGCATTATATAAAAGGAAACTGGAAACATGCACAATTATTTTCTAATGTGTACCTCCATCTGTTGCGTCTTGTCATTGCTAGTACCTTCAGTGTCCTGATGATTTTGCTTCAAAAGACTTCCATTTCCTAGTACTCCCATATGGTAACTGTTTTGAGCTTTATCATTTTGGCTTAGAAACTCAGGTAGTTGGAGACTATTTTGGTTTCCATTGTTTCCTGAAACTACAGTCTTACCATTTTCATCATCTGAATGTTCTTCCAGTTCATCTTGGAGTTCCTTGACTTGCTTTTGCAACTCCTTCACAAAATCAATTGCATCACCAAGTATTGAGGCTTTGTCCATCTGAGAAATCCACAGAAACTATTCGTTGGAAGATAATGTAAACATCAATTTGTTATTTTGGGATATCTTTAACTCAAACGAATTATGAGAGGAAAATGAGTTAAACTTGTTTAAGTGCAAGGGAAGCTGTTTTGTTTCATTCTCTTGATAATTTCCAGTGATCCAAACAAGGGTTTAGTGGTAATCACCTTAGAAATTTTGGGAACCAATGCTCGTAGGTTATACAGCCTCTCATTTAGTTTCTTTCTTCTCTTCCTCTCAGCAACAAGGTTCTTTGATTGAGGACCCTCCCCGTTCCTCCGGCGGTACTTTCCGATTGTATCATCTTCATCATCAATCCGATCACTGCAATCGGAAATTGAATCAGACCTTCCATTTTCATGTTTGACTAAGTCCTTTTCTTCCCCTTGCTGCTCTTTACATTCAGTGTTCTTGAACTGCACGTGAATGTTTGATGTGTTCATTAAGGACCCCTGCTTCGTATCCACCTCTTGGAACTCATTTTCAGCTGAAAACTTGTAAGGGTTTCCCTGCTTATCAGTAAGGAATGAATCCTGTGAACATTCATTGAAGATTTCGTTCTTGTTTCTGTTTTCTGAGCTGTAATTGAATTGTTGCAAGAAGTTCATAGGAGAACTGCAGAGGCGAATTCTGTCTAATGAGATGTCATAACCCACATCGGTGTTTTCTAATGTTGGTGCGGTTGAACCTTGTGCCTCAAATTGATTTTCAGGATCTCTTAGAACAGCATGCTGATCTGCTACAAATGGCTTTGATTGGATTCCATTTGTTGCATTTGCATCAACAGAGAAACTTGTTTCCATGTTGCTTGAATTAACAATGGCTTCTTGCTCCATCGAAATGCTGCATTGAGTTGTAACAAAATCTATGACATTCTGATCTTCAGATGCCTGTAAGAACAGAGAGAATCTGTCAAGTAGATTTTAGGAAAACCATTTTGCTATCCTTCAACTCAATCAAATAAAATATGTTTTGCTGCTGTTGAGTTATTTTTTAATTCAACCCCTTCAAAATAATGAGATTACTAGGAGTGTCTGTGTATACATGTTTAGCAACGAACAGCTCCACTAGTCCAAATGGAAATGGAACTAGTACCCTGGTCCCCACTGTTTCCTGAAAAGAGAATGGAGAAAAAGGTGTAAGCTGTTTGTTGCAACATCTAGTAGTGTGGTACTATTTTCCCTGCAAATGCTACTCACATCCAGTGCGGTTGAATCCGTGCCATTGGAGAAGAGTAGCCATTTGGGTTCATTTGATAGCAATGTCTGTATATAAACCCTGTTCAACAGAGAACAACTGAGAGAAAGAGAGAGGGAGAGAAGGGGGGTATGTGGAGATGATAAATATCAATGGAATACCCAGAATTTAGAGGCACTGAACATGGTAGCTGAGCAAGAAGTTCACAAGAACTAGCTCTTGGGTGTGGACATGTGGTGTCCCTACATGGAATGACTTGCGAAAAAGGAAGCAGAAGTTCTTCTCCACCATTTTGATTATTCTTAGTCCCAGCACAACAGCAATCCATCCATTCAATACATCTGAAACAGAAAAGAGAGCTTTTGAGTGAGTGAGAGAAATAGGATGGATCCTGAAAGGCTGAAACAGAATTAAAAGTAGTAACTCAACCTCTGGTCTTGACTCAATTTCCAGAGAACACAGTAGTCCCAGCTTTTACTACCCACAAGGGGTCTTAGTCTCTCCATCAGGTTTTGCATGATGACAATGCTATGATTAGAATCACCTGCATTTATTGATAGAAAGCAGAGGATAATTAGAAATAGCATTGAAACATGCCAAAAACATCTCAATAATAGATAGATTTGGTCAGAAAATCATACTCAAAAAGAATTATGTACAAGAAAGTAAAAATATTAATGTAGAGTACAGGTTTGAATGAAACAGTTTCCTCAAGTACATTCACAAGCACACAATGAAACTGCCAAGGACCTAGAAGACAACAGTAAGGATCCTCTCCAAGTTTCTCTCAAAACCTTTGCAAGACAGGAAAAAAAGAAACAAAGGTAAAGATTTCATAAACAGTTCAATTGATAGCAATAGTTAACAACTGGACCATGGGAATGGCATCATACCCCCCAAAGCTTATCAGACAAAAACCCACCTCAGACTAAGGGCCAACCAAATTTCCACCTTCTTTTGGCATTTTTTTGGAGAAATAGAATACAAACAATCAGCTGAAGTAGAAGTAGTACTTTTTGTTCTACAATTGTTTCTTTTTATATAATTGTTTGTTGGTTCAAATTTTGGTAGGTGAACTGCAGTTCATGCATGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGGCTTTTTAGGATATTTTTTTTCCTTTCAGTTTCTTAAAAGTAAGAAAGATGGATTAAGCGAAGAAAAAATGTATATGAGTTGGTAATGATGGGAGGAACAGATTGCATGAGCTAAGATACCCTAACTGCCTTGCTAAGTTTATTTTATACGCATTTCTTTTTAGTTTTTGCATCTTCTTTCATGACTCTCAACTACTATTTAGTATAAGCCTTGACCCAGAACTGAATGTTGCTGCTAACATGTCATCATTGTTAAGGATGAGCTTGTATTAATTGTTCCCAAACAATTTTATGTACTTACAAACATGCTTACATCTACATGCTTTATATGTCAAAGTAGCCACACAGGTTGACACACATATATATCTTTCTTTTGAGCCAGAGTATCCATTTGAGGCCATGGACTTTGATTGGGATTTTGTAATCGATTGTTGTACCATCATTGTTTGA

mRNA sequence

ATGGTATGCAAATGTTCGACAGATGAAAACTTTGCTTACCCCAACTTTGAAAACATTAGATACGAGGCCTCTATAGCTGGTCACGTAGTTGGAGACTATTTTGGTTTCCATTGTTTCCTGAAACTACAGTCTTACCATTTTCATCATCTGAATTTCATCTTGGAGTTCCTTGACTTGCTTTTGCAACTCCTTCACAAAATCAATTGCATCACCAATGATCCAAACAAGGGTTTAGTGGTAATCACCTTAGAAATTTTGGGAACCAATGCTCGTTATACAGCCTCTCATTTAGTTTCTTTCTTCTCTTCCTCTCAGCAACAAGGTTCTTTGATTGAGGACCCTCCCCGTTCCTCCGGCGGTACTTTCCGATTGTATCATCTTCATCATCAATCCGATCACTGCAATCGGAAATTGAATCAGACCTTCCATTTTCATCAACGAACAGCTCCACTAGTCCAAATGGAAATGGAACTAGTACCCTGGTCCCCACTGTTTCCTGAAAAGAGAATGGAGAAAAAGCTGAGCAAGAAGTTCACAAGAACTAGCTCTTGGGTGTGGACATGTGGTGTCCCTACATGGAATGACTTGCGAAAAAGGAAGCAGAAGTTCTTCTCCACCATTTTGATTATTCTTAGTCCCAGCACAACAGCAATCCATCCATTCAATACATCTGAAACAGAAAAGAGAGCTTTTGAAGAACACAGTAGTCCCAGCTTTTACTACCCACAAGGGGTCTTAGTCTCTCCATCAGAGTATCCATTTGAGGCCATGGACTTTGATTGGGATTTTGTAATCGATTGTTGTACCATCATTGTTTGA

Coding sequence (CDS)

ATGGTATGCAAATGTTCGACAGATGAAAACTTTGCTTACCCCAACTTTGAAAACATTAGATACGAGGCCTCTATAGCTGGTCACGTAGTTGGAGACTATTTTGGTTTCCATTGTTTCCTGAAACTACAGTCTTACCATTTTCATCATCTGAATTTCATCTTGGAGTTCCTTGACTTGCTTTTGCAACTCCTTCACAAAATCAATTGCATCACCAATGATCCAAACAAGGGTTTAGTGGTAATCACCTTAGAAATTTTGGGAACCAATGCTCGTTATACAGCCTCTCATTTAGTTTCTTTCTTCTCTTCCTCTCAGCAACAAGGTTCTTTGATTGAGGACCCTCCCCGTTCCTCCGGCGGTACTTTCCGATTGTATCATCTTCATCATCAATCCGATCACTGCAATCGGAAATTGAATCAGACCTTCCATTTTCATCAACGAACAGCTCCACTAGTCCAAATGGAAATGGAACTAGTACCCTGGTCCCCACTGTTTCCTGAAAAGAGAATGGAGAAAAAGCTGAGCAAGAAGTTCACAAGAACTAGCTCTTGGGTGTGGACATGTGGTGTCCCTACATGGAATGACTTGCGAAAAAGGAAGCAGAAGTTCTTCTCCACCATTTTGATTATTCTTAGTCCCAGCACAACAGCAATCCATCCATTCAATACATCTGAAACAGAAAAGAGAGCTTTTGAAGAACACAGTAGTCCCAGCTTTTACTACCCACAAGGGGTCTTAGTCTCTCCATCAGAGTATCCATTTGAGGCCATGGACTTTGATTGGGATTTTGTAATCGATTGTTGTACCATCATTGTTTGA

Protein sequence

MVCKCSTDENFAYPNFENIRYEASIAGHVVGDYFGFHCFLKLQSYHFHHLNFILEFLDLLLQLLHKINCITNDPNKGLVVITLEILGTNARYTASHLVSFFSSSQQQGSLIEDPPRSSGGTFRLYHLHHQSDHCNRKLNQTFHFHQRTAPLVQMEMELVPWSPLFPEKRMEKKLSKKFTRTSSWVWTCGVPTWNDLRKRKQKFFSTILIILSPSTTAIHPFNTSETEKRAFEEHSSPSFYYPQGVLVSPSEYPFEAMDFDWDFVIDCCTIIV
Homology
[Close]
BLAST of CaUC02G030240 vs. NCBI nr
Match: KAG7011771.1 (hypothetical protein SDJN02_26677, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 9.1e-38
Identity = 88/139 (63.31%), Postives = 101/139 (72.66%), Query Frame = 0 

Query: 97  LVSFFSSSQQQGSLIEDPPRSSGGTFRLYHLHHQSDHCNRKLNQTFHFH-QRTAPLVQME 156
           L  F S +QQQGSLIEDP +SSGGT RL+HL H+SDHCNR+LNQTF FH     P+ Q  
Sbjct: 62  LYHFGSETQQQGSLIEDPAQSSGGTLRLHHLRHRSDHCNRRLNQTFRFHCLYVNPVQQRT 121

Query: 157 MELVPWSPLFPEKRMEK-KLSKKFTRTSSWVWTCGVPTWNDLRKRKQKFFSTILIILSPS 216
            E          +R    +LSKK TRT SWVW C VPTWNDLR RK KFFSTIL ILSPS
Sbjct: 122 TERKRERERRKGRRHRTWQLSKKITRTGSWVWICSVPTWNDLRNRKPKFFSTILPILSPS 181

Query: 217 TTAIHPFNTSETEKRAFEE 234
           TTA+HPFNTSET+++AFE+
Sbjct: 182 TTAVHPFNTSETKEKAFEK 200

The following BLAST results are available for this feature:
BLAST of CaUC02G030240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011771.19.1e-3863.31hypothetical protein SDJN02_26677, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CaUC02G030240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G030240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G030240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G030240.1CaUC02G030240.1mRNA