CaUC02G028400 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G028400
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Pectin lyase-like superfamily protein
Location	Ciama_Chr02: 2732372 .. 2732862 (-)
RNA-Seq Expression	CaUC02G028400
Synteny	CaUC02G028400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCACGAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCCGGCACTGCCACCAACATGCATTTTTTCGATATTATAATGGTCAATGTTAGCAACCCAATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGGTATTTATCACATTTTTAAAACTTTGATTTTTAAATTTCTTCATGTTAATTAACTTCCCAAATGAACTTTTATTTTCATTTTTCAGATTCCGTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCAATGGCAGTCAAGCTTATTTGTAGTAGCGACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTTGTTTACAATGGAAAAGAAGGACCCATTACATCTCAGTGTATGAATGTGAGACCCATCATTTCGGGGATACAAAATCCTCAAACATGCTCTTCCCCTTACGTTTTTCCATGA

mRNA sequence

ATGAACACCACGAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCCGGCACTGCCACCAACATGCATTTTTTCGATATTATAATGGTCAATGTTAGCAACCCAATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGATTCCGTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCAATGGCAGTCAAGCTTATTTGTAGTAGCGACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTTGTTTACAATGGAAAAGAAGGACCCATTACATCTCAGTGTATGAATGTGAGACCCATCATTTCGGGGATACAAAATCCTCAAACATGCTCTTCCCCTTACGTTTTTCCATGA

Coding sequence (CDS)

ATGAACACCACGAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCCGGCACTGCCACCAACATGCATTTTTTCGATATTATAATGGTCAATGTTAGCAACCCAATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGATTCCGTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAACTCCAATGGCAGTCAAGCTTATTTGTAGTAGCGACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTTGTTTACAATGGAAAAGAAGGACCCATTACATCTCAGTGTATGAATGTGAGACCCATCATTTCGGGGATACAAAATCCTCAAACATGCTCTTCCCCTTACGTTTTTCCATGA

Protein sequence

MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGIQNPQTCSSPYVFP

Homology

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BLAST of CaUC02G028400 vs. NCBI nr
Match: XP_038887127.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-66
Identity = 125/134 (93.28%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTWPASPVAGTATNMHF DIIMVNVS PILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 248 MNTTNGVRIKTWPASPVAGTATNMHFSDIIMVNVSIPILIDQEYCPWNQCNRKIPSKIKI 307

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           SKVSFKNI G+SATPMAVKL+CSSDLPCDEVK+ NIDLVYNGKEGPITSQC NVRPII G
Sbjct: 308 SKVSFKNIIGTSATPMAVKLVCSSDLPCDEVKITNIDLVYNGKEGPITSQCRNVRPIILG 367

Query: 121 IQNPQTCSSPYVFP 135
           IQNPQTCSSPYVFP
Sbjct: 368 IQNPQTCSSPYVFP 381

[Close]

BLAST of CaUC02G028400 vs. NCBI nr
Match: XP_038887188.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 7.3e-65
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTWPASPV+GTATNMHF DIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 269 MNTTNGVRIKTWPASPVSGTATNMHFSDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 328

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           SKVSFKNIRGSSATPMAVKLICS  LPCDEVKVANIDLVYNGKEGPI S CMNV+PIISG
Sbjct: 329 SKVSFKNIRGSSATPMAVKLICSRKLPCDEVKVANIDLVYNGKEGPIKSLCMNVKPIISG 388

Query: 121 IQNPQTCSSPY 132
           IQNPQTCS PY
Sbjct: 389 IQNPQTCSLPY 399

[Close]

BLAST of CaUC02G028400 vs. NCBI nr
Match: XP_038887126.1 (LOW QUALITY PROTEIN: exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 119/133 (89.47%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTW ASPVAGTA NMHF DI MVNVSNPILIDQEYCPWNQCNR I SKIKI
Sbjct: 479 MNTTNGVRIKTWSASPVAGTAXNMHFSDIKMVNVSNPILIDQEYCPWNQCNRNILSKIKI 538

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           SKVSFKNI G+SATPMAVKL+CS DLPCDEVKV NIDLVYNGKEG ITSQC NVRPII G
Sbjct: 539 SKVSFKNIVGTSATPMAVKLVCSIDLPCDEVKVTNIDLVYNGKEGSITSQCTNVRPIILG 598

Query: 121 IQNPQTCSSPYVF 134
           IQNPQTCSSPYVF
Sbjct: 599 IQNPQTCSSPYVF 611

[Close]

BLAST of CaUC02G028400 vs. NCBI nr
Match: XP_008455553.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo] >TYK21621.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 4.2e-60
Identity = 114/131 (87.02%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 270 MNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 329

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           +KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVYNG +G +TS+CMNV+PIISG
Sbjct: 330 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMNVKPIISG 389

Query: 121 IQNPQTCSSPY 132
            QNP  CSS Y
Sbjct: 390 TQNPPICSSSY 400

[Close]

BLAST of CaUC02G028400 vs. NCBI nr
Match: KAA0059116.1 (exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 4.2e-60
Identity = 114/131 (87.02%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 270 MNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 329

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           +KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVYNG +G +TS+CMNV+PIISG
Sbjct: 330 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMNVKPIISG 389

Query: 121 IQNPQTCSSPY 132
            QNP  CSS Y
Sbjct: 390 TQNPPICSSSY 400

[Close]

BLAST of CaUC02G028400 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-38
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 2   NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKIS 61
           NT+NG RIKTWP     G  + +HF DI M NVS+PILIDQ+YCPWN+C +   SK+K+S
Sbjct: 272 NTSNGARIKTWPGEH-GGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLS 331

Query: 62  KVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGI 121
            +SFKNIRG+SA P A+K ICS   PC  V++A+ID+ +NG E P TSQC+NV+PI SG 
Sbjct: 332 NISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAE-PATSQCLNVKPITSGK 391

Query: 122 QNPQTCSSP 131
            NP  CS P
Sbjct: 392 LNPIPCSGP 398

[Close]

BLAST of CaUC02G028400 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.6e-38
Identity = 71/128 (55.47%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 2   NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKIS 61
           NT NGVRIKTWPAS   G   ++HF DII+ NVSNP++IDQ YCP+N+CN+ +PS++KIS
Sbjct: 264 NTDNGVRIKTWPASH-PGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKIS 323

Query: 62  KVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGI 121
           KVSF+NI+G+S T  AV L+ S  +PC+ ++V +ID+ Y+GKEGP  S C N++P + G 
Sbjct: 324 KVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGK 383

Query: 122 QNPQTCSS 130
           QNP  C++
Sbjct: 384 QNPPVCTA 390

[Close]

BLAST of CaUC02G028400 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.9e-38
Identity = 70/130 (53.85%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 3   TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISK 62
           T+NG+RIKTWP++    TA  +HF DII+  VSNPILIDQEYCPWNQCN+  PS IK+  
Sbjct: 262 TSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVD 321

Query: 63  VSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGIQ 122
           ++F+NIRG+S    AVKL+CS   PC+ V++ +I++ Y G +GP T +C NV P + G Q
Sbjct: 322 ITFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPKLVGAQ 381

Query: 123 NPQTCSSPYV 133
           NP+ C  P V
Sbjct: 382 NPKACVGPVV 391

[Close]

BLAST of CaUC02G028400 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.9e-38
Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 2   NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKIS 61
           NT+NG RIKTWP     G  + +HF DI M NVS+PILIDQ+YCPWN+C +   SK+K+S
Sbjct: 272 NTSNGARIKTWPGEH-GGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLS 331

Query: 62  KVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGI 121
            +SFKNIRG+SA P A+K ICS   PC  V++A+ID+ +NG E P TSQC+NV+PI  G 
Sbjct: 332 NISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAE-PATSQCLNVKPITIGK 391

Query: 122 QNPQTCSSP 131
            NP  CS P
Sbjct: 392 LNPIPCSGP 398

[Close]

BLAST of CaUC02G028400 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-37
Identity = 73/124 (58.87%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 5   NGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVS 64
           NGVRIKTWP S   G A+ MHF DI M +V  PILIDQ YCP+NQC  ++PS +K+SK+S
Sbjct: 233 NGVRIKTWPKSE-PGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKIS 292

Query: 65  FKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGIQNP 124
           FKNI+G+S T  AVKL+CS   PC+ V++A+IDL Y+GK GP TS C N++P I G Q P
Sbjct: 293 FKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIP 352

Query: 125 QTCS 129
             CS
Sbjct: 353 AICS 355

[Close]

BLAST of CaUC02G028400 vs. ExPASy TrEMBL
Match: A0A5A7UY44 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00230 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.0e-60
Identity = 114/131 (87.02%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 270 MNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 329

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           +KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVYNG +G +TS+CMNV+PIISG
Sbjct: 330 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMNVKPIISG 389

Query: 121 IQNPQTCSSPY 132
            QNP  CSS Y
Sbjct: 390 TQNPPICSSSY 400

[Close]

BLAST of CaUC02G028400 vs. ExPASy TrEMBL
Match: A0A5D3DD75 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00190 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.0e-60
Identity = 114/131 (87.02%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 270 MNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 329

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           +KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVYNG +G +TS+CMNV+PIISG
Sbjct: 330 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMNVKPIISG 389

Query: 121 IQNPQTCSSPY 132
            QNP  CSS Y
Sbjct: 390 TQNPPICSSSY 400

[Close]

BLAST of CaUC02G028400 vs. ExPASy TrEMBL
Match: A0A1S3C2F4 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.0e-60
Identity = 114/131 (87.02%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 270 MNTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 329

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           +KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVYNG +G +TS+CMNV+PIISG
Sbjct: 330 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMNVKPIISG 389

Query: 121 IQNPQTCSSPY 132
            QNP  CSS Y
Sbjct: 390 TQNPPICSSSY 400

[Close]

BLAST of CaUC02G028400 vs. ExPASy TrEMBL
Match: A0A6J1F1K6 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438524 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.8e-60
Identity = 114/134 (85.07%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           +NTTNGVRIKTWPAS  +GTATNM F DIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI
Sbjct: 270 INTTNGVRIKTWPASAASGTATNMQFLDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 329

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           SKVSFKNIRGS ATPMA+KLICS  LPCDEVKV +IDL YNG +GPITSQC NVRPIISG
Sbjct: 330 SKVSFKNIRGSCATPMAIKLICSRHLPCDEVKVGDIDLTYNGIKGPITSQCTNVRPIISG 389

Query: 121 IQNPQTCSSPYVFP 135
            QNP+ CSSPYV P
Sbjct: 390 KQNPKICSSPYVVP 403

[Close]

BLAST of CaUC02G028400 vs. ExPASy TrEMBL
Match: A0A0A0K3B7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 113/131 (86.26%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKI 60
           +NTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNR+IPS IKI
Sbjct: 269 INTTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKI 328

Query: 61  SKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISG 120
           +KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVYNG +G ITS+CMNV+PIISG
Sbjct: 329 NKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMNVKPIISG 388

Query: 121 IQNPQTCSSPY 132
           IQNP  CSS Y
Sbjct: 389 IQNPPICSSSY 399

[Close]

BLAST of CaUC02G028400 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-40
Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 3   TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISK 62
           T NG+RIKTWP++  + TA+++HF DII+ +VSNPILIDQEYCPWNQCN++  S IK+  
Sbjct: 262 TDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVN 321

Query: 63  VSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGIQ 122
           +SFKNIRG+S    AVKL+CS   PC  V++ +ID+ YNG +GP T  C NV P I G Q
Sbjct: 322 ISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPKILGSQ 381

Query: 123 NPQTCSSP 131
           +P+ CS+P
Sbjct: 382 SPKACSAP 389

[Close]

BLAST of CaUC02G028400 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-40
Identity = 72/132 (54.55%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 3   TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISK 62
           T NG+RIKTWP++    TA+++HF +I++ NVSNPILIDQEYCPWNQCN++ PS IK++ 
Sbjct: 262 TDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLAN 321

Query: 63  VSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGIQ 122
           +SFK IRG+S    AVKL+CS   PC  V+V ++++ Y G +GP T QC NV P + G Q
Sbjct: 322 ISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPKLVGTQ 381

Query: 123 NPQTCSSPYVFP 135
            P+ CSSP   P
Sbjct: 382 IPKACSSPVTKP 393

[Close]

BLAST of CaUC02G028400 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 5.1e-40
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 3   TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISK 62
           T NG+RIKTWP++  A TA+ +HF +II+ NVSNPILIDQEYCPWNQCN++ PS IK+  
Sbjct: 263 TDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVD 322

Query: 63  VSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGIQ 122
           +SFKNIRG+S    AVKL+CS   PC  V++ NI+L Y G +GP T  C NV P + G Q
Sbjct: 323 ISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVSPKLVGTQ 382

Query: 123 NPQTCSS 130
           NP+ CS+
Sbjct: 383 NPKACSA 389

[Close]

BLAST of CaUC02G028400 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-39
Identity = 71/130 (54.62%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 3   TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISK 62
           T NG+RIKTWP++  + TA+N+HF +II+ NVSNPILIDQEYCPWNQCN++  S IK++ 
Sbjct: 263 TDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLAN 322

Query: 63  VSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGIQ 122
           +SF+ IRG+S    AVKL+CS   PC+ V+V +I++ Y G +GP T  C NVRP + G Q
Sbjct: 323 ISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVRPKLVGTQ 382

Query: 123 NPQTCSSPYV 133
            P+ C++P V
Sbjct: 383 FPKACNTPPV 392

[Close]

BLAST of CaUC02G028400 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-38
Identity = 72/127 (56.69%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 2   NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKIS 61
           NT NGVRIKTWP SP  G A+N+ F DI M NVS P+LIDQEYCP+  C   +PSK+K+S
Sbjct: 313 NTDNGVRIKTWPGSP-PGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLS 372

Query: 62  KVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQCMNVRPIISGI 121
            V+ KNI+G+SAT +AVKL+CS  +PC  + +++I+LV+NGKEGP  S C N++PI+SG 
Sbjct: 373 DVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGK 432

Query: 122 QNPQTCS 129
             P  C+
Sbjct: 433 LVPAACT 438

The following BLAST results are available for this feature:

BLAST of CaUC02G028400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887127.1	1.3e-66	93.28	exopolygalacturonase-like [Benincasa hispida]	[more]
XP_038887188.1	7.3e-65	93.89	exopolygalacturonase-like [Benincasa hispida]	[more]
XP_038887126.1	2.9e-61	89.47	LOW QUALITY PROTEIN: exopolygalacturonase-like [Benincasa hispida]	[more]
XP_008455553.1	4.2e-60	87.02	PREDICTED: exopolygalacturonase-like [Cucumis melo] >TYK21621.1 exopolygalacturo...	[more]
KAA0059116.1	4.2e-60	87.02	exopolygalacturonase-like [Cucumis melo var. makuwa]	[more]

BLAST of CaUC02G028400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39786	1.6e-38	58.14	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
Q05967	4.6e-38	55.47	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
P35337	7.9e-38	53.85	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q39766	7.9e-38	57.36	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
P24548	1.8e-37	58.87	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]

BLAST of CaUC02G028400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY44	2.0e-60	87.02	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3DD75	2.0e-60	87.02	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C2F4	2.0e-60	87.02	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1	[more]
A0A6J1F1K6	5.8e-60	85.07	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438524 PE=3 SV=...	[more]
A0A0A0K3B7	1.7e-59	86.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1	[more]

BLAST of CaUC02G028400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07820.1	1.0e-40	57.03	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	2.3e-40	54.55	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	5.1e-40	58.27	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	1.5e-39	54.62	Pectin lyase-like superfamily protein	[more]
AT3G14040.1	2.1e-38	56.69	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..131 e-value: 1.0E-29 score: 105.7
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 2..115 e-value: 1.8E-31 score: 109.4
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..130
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 2..130
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G028400.1	CaUC02G028400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity