CaUC02G028390 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G028390
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProtochlorophyllide reductase
LocationCiama_Chr02: 2726120 .. 2726455 (+)
RNA-Seq ExpressionCaUC02G028390
SyntenyCaUC02G028390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGTCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

mRNA sequence

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGTCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCGGTGAGAAGAAACCTCCACAACATAAGGAAGAGTCCGCGAGTGGCAGATGAAAGCATGTACGGCGTCGGTGTTGCCGGAGTTGACGGCGGCGGAAGGGTGGCGGCGGTGGTCGACGGCGGCCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACAGTCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTCTCTCAACCACATGTAAACGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Homology
BLAST of CaUC02G028390 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 5.9e-52
Identity = 107/112 (95.54%), Postives = 107/112 (95.54%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GVGVAGVDGGGRVAAVVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMY G G  GVDGGGRVAAVVDG RREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

BLAST of CaUC02G028390 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 6.5e-51
Identity = 105/111 (94.59%), Postives = 105/111 (94.59%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRV AVVDG RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVGAVVDGDRREGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108

BLAST of CaUC02G028390 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 106/112 (94.64%), Postives = 106/112 (94.64%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAA-VVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRVAA VVDG RREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVAAVVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of CaUC02G028390 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 3.3e-47
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  G  G DGGGR   V+DG RR+GNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAG-GGADGGGR---VIDGNRRDGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of CaUC02G028390 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 9.7e-47
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  G  G DGG   A V+DG RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAG-GGADGG---ATVIDGNRREGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 106/112 (94.64%), Postives = 106/112 (94.64%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAA-VVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRVAA VVDG RREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVAAVVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.7e-47
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  G  G DGG   A V+DG RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAG-GGADGG---ATVIDGNRREGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.5e-45
Identity = 97/107 (90.65%), Postives = 98/107 (91.59%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAA-VVDGGRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYG    GVDGGGRVAA VVDG RREGNSYGFSMI
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMYG---GGVDGGGRVAAVVVDGDRREGNSYGFSMI 100

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 107
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 91/111 (81.98%), Postives = 96/111 (86.49%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           MWRLAA +RRNLHNIRKSPRVADESMYG G  G DGGG VA   +  RR GNSYGFSMIY
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGG--GGDGGGIVA---ERDRRGGNSYGFSMIY 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           S+LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  SVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

BLAST of CaUC02G028390 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGG-RREGNSYGFSMI 60
           MWRLAAAVR  LHNIRKSPRVADESM+  G  GVDGGGR   VVDGG RRE NS+G S+I
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGG--GVDGGGR---VVDGGRRRERNSHGVSII 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
           Y++LRTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  YNVLRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

BLAST of CaUC02G028390 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-25
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMIY 60
           M ++ + +RRNL N+RKSPRVAD++      +G   G     VV  GRR+    GF+ + 
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPG-----VVANGRRD----GFNSV- 60

Query: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
            ++R PFSI+SCF+ P V+G DG+WVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  -IMRFPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

BLAST of CaUC02G028390 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 7.5e-21
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADES-MYGVGVAGVDGGGRVAAVVDGGRREGNSYGFSMI 60
           M ++ + +RRNL N+RKSPRVADES +    V G  GGG            G++ G    
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDHGGG-----------NGSNGG---- 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112
             +++ P SI+SCFS P V+  DG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  --IMKFPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888385.15.9e-5295.54uncharacterized protein LOC120078235 [Benincasa hispida][more]
XP_031744820.16.5e-5194.59uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica... [more]
KAA0059153.15.5e-5094.64uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0... [more]
KAG6572248.13.3e-4788.29hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022969305.19.7e-4788.29uncharacterized protein LOC111468352 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTM82.7e-5094.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1HZK34.7e-4788.29uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352... [more]
A0A1S3C1347.5e-4590.65uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=... [more]
A0A6J1C6U01.7e-4181.98uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1ER341.5e-4082.14uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
Match NameE-valueIdentityDescription
AT5G35732.16.5e-2553.15unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G04795.17.5e-2148.21unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48165BNAC03G44900D PROTEINcoord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G028390.1CaUC02G028390.1mRNA