CaUC02G028350 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G028350
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionglycine-rich protein DC7.1-like
LocationCiama_Chr02: 2680798 .. 2683231 (+)
RNA-Seq ExpressionCaUC02G028350
SyntenyCaUC02G028350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCGTCGTCGTCCTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCAGTGAGTTTCATTTCCACACCTTTATATTAGATGATACATTGCAATTCTTTAATTTTACACTCATTTAATTACTGTTATACATACGTTGATTCTTTTGATAACATAGTGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATCATGTATGCCTCAACCGCTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCTAACAACTAAAGTACATGTTGTTGCTTCAAATAAAGGGCTTTAATTTCTGTAGTTGATGCTTTGCTACAGTTTGAATGTTTTTAAGTTGATAAATGCATATGTTTTGAGATTAATTAGTATAAGTTAATCTCAGTACCATGACAAGTACATTTCTCCAATGGCTTTTCTGTCAATTGGTTTTCTCATTAATCTATCAAAATCTCCTTACAAGTACTATTTTGTTTGTTTGATTGGAGCTACCCAGTTAAATCTATGTTGATTGAATAAAACAATGTTTTTGGAGTGATCAATGCAACAATTTTCACTTTTTCCAACGTCGGAAAAAGTACTAAAAATGTCGAGAAAAGTTATGTCGACGCATTTTTCTGCATCAGCATAACTGTTGGCGTATCCAAATCGAGAGAAGTACTTCTCGACGAAAAAAATATTTTTATCGATAAAAGTATACTTTTGTCGATGCAATATTGCATTGGCAAATAAACTTACAACGTGCCGCTGCCAGCGTTGTTGGAGAGTGCGGTTGCCGCGTCGGAGGAGCGTGCAGCCGCAAGACCTCCAAGCTTGCAAAGAAAAACTTGATTGGGGGAGAGGTGGAAGAAAAGATGAGAGAGGAAAAGTGGAGTGAGAAAGGAAAATGTGGGGAAAAGAAAAGTTGGGTAAAATTAAAGAAAATTTGATATATAAAAAAATTTTGATTTTTTTATAAAACTTTTGCAATGCGTCAGGATAAGTGTCTAGTTGCGTCGTTATAAATATATAAGAAAAAAACGTTGGTGTTACTTAATTTTGGCCGACAAATTAAAATTACGTTCGGCAATACTAGTCTATGCCGATGAAAATTGATGCATCGGATAAAAAAATATCGTAACAGGTAAAAATTCTTGTAGTGTGATCTTGAAATTTACAAAAGTGATTTTGACCATGTAAATCTAAATTGATTTGAAAGTAGTTAGTTGACAACTGAAAAGCATGTCTATTTTTGTAAAAAAAAAAAAAAAAAATTACGGATACATGAATTTACTTGTTTGATTGGACAAACATCAATGGAGCACACGCATGTGTAGTGAAGTTTTCGTACCACTCTAAATACATTTTAGTTCTTACAAATGTCCATAAAATTATGGTATATATATAAATACATATTGATGTAGCATCTAAATTAAGTAATATTAATTATAAAATTACACTAAACATTTATATAATTTCTTTGAGAAAAACGTTTATCACATTAACCAACCTAAAATATATAAGGAAATAATGAAATTTGAAATATTTATTAAAGCTTCTTAAACTAAAACACAACAAAAATCATTAATTTTCTTTTTAAAAAATTAATAAGGATCAGAAAATTATTTATGTATTTAAATGTGTATTTATATGAGAGAAAAATTAAAAATAGAATTAATGTTTTAAATTTATTTTAAGTGAAAAAAAAAAAAAAACAATATTGATATATGAAATAAAAAAATAAAAAATAAAAAAATAAAAAAACGGAACAAGTATATGTACGTATATACAAAAATTCAATTGAGTGCCTCCCTTGCCCGTGCATCCATCGGCCCCGAACTTTGAATGTTGTTAGGATCAAAACATTGTCAAATTTTGTTTGATGGATGAGGAGATCTCATACTCTTTATAAGAGGCATGGTTTTTATTGTCAATTAGCTTTGAAATGGAATTGTAATATGATATCTAAGTCCCTTAAAAAAAAACCCTAATAAGAACCATATAAACAATATGCTTGCATGTCTCAAATGTCAAGTTTGTTAATATTATCTAAAATATATAACTTCACATTTTGTATGGTCGTGTCACTTGACGCTTTAATTAATGTCAGACATGTTGATTACAAGAATAACATAGTAGAAGAAGCTATGATGAAAACGGGAGCAGAGTTGATGATGTCAATTGTCAAGCATTGCGGTTTCGGAGGACACTTTAGATTCTGGTTGTTGTCACCACCACGACGGTGGTTGCAGCCGGTGCCGCAGTTCTGCTGGTGAGGCTGTTGATGCAGAGCCCCAAGCCAAGCCTAACAACTGA

mRNA sequence

ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCGTCGTCGTCCTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATCATGTATGCCTCAACCGCTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGCGTTGTTGGAGAGTGCGGTTGCCGCGTCGGAGGAGCGTGCAGCCGCAAGACCTCCAAGCTTGCAAAGAAAAACTTGATTGGGGGAGAGGTGGAAGAAAAGATGAGAGAGGAAAAGTGGAGTGAGAAAGGAAAATTTTCGGAGGACACTTTAGATTCTGGTTGTTGTCACCACCACGACGGTGGTTGCAGCCGGTGCCGCAGTTCTGCTGGTGAGGCTGTTGATGCAGAGCCCCAAGCCAAGCCTAACAACTGA

Coding sequence (CDS)

ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCGTCGTCGTCCTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATCATGTATGCCTCAACCGCTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGCGTTGTTGGAGAGTGCGGTTGCCGCGTCGGAGGAGCGTGCAGCCGCAAGACCTCCAAGCTTGCAAAGAAAAACTTGATTGGGGGAGAGGTGGAAGAAAAGATGAGAGAGGAAAAGTGGAGTGAGAAAGGAAAATTTTCGGAGGACACTTTAGATTCTGGTTGTTGTCACCACCACGACGGTGGTTGCAGCCGGTGCCGCAGTTCTGCTGGTGAGGCTGTTGATGCAGAGCCCCAAGCCAAGCCTAACAACTGA

Protein sequence

MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAISVANHVCLNRCAHGCCSCVRGRCISVVGECGCRVGGACSRKTSKLAKKNLIGGEVEEKMREEKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN
Homology
BLAST of CaUC02G028350 vs. NCBI nr
Match: XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-20
Identity = 77/167 (46.11%), Postives = 85/167 (50.90%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSKAFIFLGLLF +VVL SSEEVT + ARDVKF +EAMMET EVDDV+RHGFGGG A +
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVT-VMARDVKF-EEAMMETGEVDDVERHGFGGGHARN 60

Query: 61  VANHVCLNRCAHGCCSCVRGRCISVVGECGCRVGGACSRKTSKLAKKNLIGGEVEEKMRE 120
           +A   CL+ C HGCC C RGRCI                                     
Sbjct: 61  LAE--CLHGCNHGCCECFRGRCI------------------------------------- 99

Query: 121 EKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN 168
                                      RC S AGEAVD +PQAKPNN
Sbjct: 121 ---------------------------RCCSFAGEAVDVKPQAKPNN 99

BLAST of CaUC02G028350 vs. NCBI nr
Match: XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-20
Identity = 77/167 (46.11%), Postives = 84/167 (50.30%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSKAFIFLGLLF +VVL SSEEVT + ARDVKF  EAMMET EVDDV+RHGFGGG A +
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVT-VMARDVKF--EAMMETGEVDDVERHGFGGGHARN 60

Query: 61  VANHVCLNRCAHGCCSCVRGRCISVVGECGCRVGGACSRKTSKLAKKNLIGGEVEEKMRE 120
           +A   CL+ C HGCC C RGRCI                                     
Sbjct: 61  LAE--CLHGCNHGCCECFRGRCI------------------------------------- 98

Query: 121 EKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN 168
                                      RC S AGEAVD +PQAKPNN
Sbjct: 121 ---------------------------RCCSFAGEAVDVKPQAKPNN 98

BLAST of CaUC02G028350 vs. NCBI nr
Match: XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-13
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
          MSSK+FI LGLLF  VVL SSE +T +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1  MSSKSFILLGLLF-AVVLFSSEAIT-VTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61 VANHVCLNRCAHGCCSCVRGRCI---SVVGECG 91
          +A   CL+ C  GCC C RGRCI   S  GE G
Sbjct: 61 LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAG 88

BLAST of CaUC02G028350 vs. NCBI nr
Match: XP_038888674.1 (glycine-rich protein-like [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-09
Identity = 64/163 (39.26%), Postives = 70/163 (42.94%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETD--EVDDVKRHGFGGGQA 60
           MSSKAFIFLG LFVVVVLLSSEEVTAI A D+K +++AMMET+    +DVKR    G   
Sbjct: 1   MSSKAFIFLGFLFVVVVLLSSEEVTAI-ADDLKSVEKAMMETNGGGFEDVKRRFRRG--- 60

Query: 61  ISVANHVCLNRCAHGCCSCVRGRCISVVGECGCRVGGACSRKTSKLAKKNLIGGEVEEKM 120
                H     C HGCC                                           
Sbjct: 61  -----HHGHRHCHHGCCG------------------------------------------ 91

Query: 121 REEKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEP 162
                                HHH GGCSRC S AGEAVDAEP
Sbjct: 121 ---------------------HHHLGGCSRCCSFAGEAVDAEP 91

BLAST of CaUC02G028350 vs. NCBI nr
Match: KAE8645721.1 (hypothetical protein Csa_020383 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-07
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
          M+SKAFI LGLLF  V+L    EVTA+TA +     EA  +TDE++DVK H  GG  A S
Sbjct: 1  MNSKAFILLGLLFAAVIL----EVTAVTATNDIKSNEAFKQTDEINDVKHHDLGGEDA-S 60

Query: 61 VANHVCLNRCAHGCCSCVRGRCI 84
          +A   C + C  GCC C  G C+
Sbjct: 61 LAQ--CHHHCHKGCCKCSHGHCV 76

BLAST of CaUC02G028350 vs. ExPASy TrEMBL
Match: A0A0A0K5A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
          MSSK+FI LGLLF  VVL SSE +T +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1  MSSKSFILLGLLF-AVVLFSSEAIT-VTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61 VANHVCLNRCAHGCCSCVRGRCI---SVVGECG 91
          +A   CL+ C  GCC C RGRCI   S  GE G
Sbjct: 61 LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAG 88

BLAST of CaUC02G028350 vs. ExPASy TrEMBL
Match: A0A6J1JMI7 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMET--DEVDDVKRHGFGGGQA 60
          M+SKAFI LGLLF VV+LLSSEE TA TAR +K ++EA+MET  D ++D KR  FGGG  
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEATA-TARGLKSVEEAVMETNGDGIEDDKRR-FGGGHH 60

Query: 61 ISVANHVCLNR-CAHGC 75
              +H   +R C HGC
Sbjct: 61 GHKHHHRHHHRHCRHGC 75

BLAST of CaUC02G028350 vs. ExPASy TrEMBL
Match: A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 62/168 (36.90%), Postives = 76/168 (45.24%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           M+SKAFI LGLLF VVVLLSS+    +TARD+K   E +METD V+D K   +  G    
Sbjct: 1   MNSKAFILLGLLFAVVVLLSSD----VTARDLK--GETVMETDGVEDAKDRSYDRG---- 60

Query: 61  VANHVCLNRCAHGCCSCVRGRCISVVGECGCRVGGACSRKTSKLAKKNLIGGEVEEKMRE 120
                      HG                    GG   R  S+       G         
Sbjct: 61  -----------HG------------------HYGGGYDRGHSRYGG----GYPGHGGHYG 120

Query: 121 EKWSEKGKFSEDT-LDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN 168
             +  +G++        GCC +H G C RC S AGEAVD EPQAKP+N
Sbjct: 121 GGYPGRGRYGGGRHCHHGCCGYH-GSCGRCCSYAGEAVDVEPQAKPHN 124

BLAST of CaUC02G028350 vs. ExPASy TrEMBL
Match: A0A6J1ESD5 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMET--DEVDDVKRHGFGGGQA 60
          M+SKAFI LGLLF +V+LLSSEE +A TAR +K ++EA+MET  D ++D KR  FGGG  
Sbjct: 1  MNSKAFIILGLLFTIVILLSSEEASA-TARGLKSVEEAVMETNGDGIEDDKRR-FGGGHH 60

Query: 61 ISVANHVCLNR----CAHGC 75
              +H   +R    C HGC
Sbjct: 61 GHRHHHRHHHRHRHHCRHGC 78

BLAST of CaUC02G028350 vs. ExPASy TrEMBL
Match: A0A6J1C3E0 (glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVVVVLLSSEEVTAITARDVKFMKEAMMETDE-VDDVKRHGFGGGQAI 60
          MSSK  IFLGLLF VVVLLSSEEVTA TARD+K ++E M ET+  ++D KR   G     
Sbjct: 1  MSSKTLIFLGLLFAVVVLLSSEEVTA-TARDLKSVEEVMTETNNGIEDDKRGHHGHHH-- 60

Query: 61 SVANHVCLNRCAHGCCS 77
             +H     C H  CS
Sbjct: 61 ---HHRRRRHCHHHHCS 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888333.11.1e-2046.11glycine-rich protein-like isoform X1 [Benincasa hispida][more]
XP_038888334.11.8e-2046.11glycine-rich protein-like isoform X2 [Benincasa hispida][more]
XP_004144531.13.6e-1358.06glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203... [more]
XP_038888674.17.1e-0939.26glycine-rich protein-like [Benincasa hispida][more]
KAE8645721.12.3e-0749.40hypothetical protein Csa_020383 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K5A11.8e-1358.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1[more]
A0A6J1JMI71.2e-0657.14glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4... [more]
A0A6J1C3T31.6e-0636.90glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1ESD51.3e-0552.50glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE... [more]
A0A6J1C3E02.5e-0453.25glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G028350.1CaUC02G028350.1mRNA