CaUC02G028270 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G028270
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Eukaryotic translation initiation factor 4C
Location	Ciama_Chr02: 2586784 .. 2587221 (+)
RNA-Seq Expression	CaUC02G028270
Synteny	CaUC02G028270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAACAATGGAAAGGGAGGAAAGAATAGGAAGAGAGGTACAGATGACGAGAAGCGTGAGGTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTCTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

mRNA sequence

ATGCCAAAGAACAATGGAAAGGGAGGAAAGAATAGGAAGAGAGGTACAGATGACGAGAAGCGTGAGGTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTCTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Coding sequence (CDS)

ATGCCAAAGAACAATGGAAAGGGAGGAAAGAATAGGAAGAGAGGTACAGATGACGAGAAGCGTGAGGTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTCTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG

Protein sequence

MPKNNGKGGKNRKRGTDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDDDEGGGDAYIEFEDEDIDKI

Homology

[Close]

BLAST of CaUC02G028270 vs. NCBI nr
Match: XP_022135622.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-66
Identity = 135/148 (91.22%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL +YQDDKADVILKYM DEARLLKAYSELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. NCBI nr
Match: XP_004144524.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis melo] >XP_038888593.1 eukaryotic translation initiation factor 1A-like [Benincasa hispida] >KAA0059115.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa] >KGN43463.1 hypothetical protein Csa_020194 [Cucumis sativus] >TYK21620.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-66
Identity = 135/148 (91.22%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. NCBI nr
Match: XP_022930658.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988995.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023529812.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >KAG6589133.1 hypothetical protein SDJN03_17698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.8 bits (665), Expect = 7.2e-66
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of CaUC02G028270 vs. NCBI nr
Match: XP_022895864.1 (eukaryotic translation initiation factor 1A-like [Olea europaea var. sylvestris] >CAA2986154.1 eukaryotic translation initiation factor 1A [Olea europaea subsp. europaea])

HSP 1 Score: 253.8 bits (647), Expect = 8.7e-64
Identity = 130/148 (87.84%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GG+D++DD   GGGD YIEFEDEDIDKI
Sbjct: 121 GGLDEEDD---GGGDDYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. NCBI nr
Match: XP_031490608.1 (eukaryotic translation initiation factor 1A [Nymphaea colorata])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 130/148 (87.84%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GG+   DD+DEGG D YIEFEDEDIDKI
Sbjct: 121 GGL---DDEDEGGADDYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 1.0e-59
Identity = 122/149 (81.88%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DD+KRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILK M DEARLLKAY ELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 VGGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
            GG+D++ D      + YIEFEDEDIDKI
Sbjct: 121 AGGLDEEMDT----ANDYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 225.3 bits (573), Expect = 4.4e-58
Identity = 117/149 (78.52%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DD+KRE+VFKEDGQEYAQV RMLGNGRCEA+C+DG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGL DYQDDKADVILKYM+DEARLLKAY ELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGMDDDDDDDEGGGDA-YIEFEDEDIDKI 146
               D D  +EG GD+ YI+FEDEDIDKI
Sbjct: 121 ----DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of CaUC02G028270 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 5.0e-46
Identity = 101/151 (66.89%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNR+RG    + EKRE+VFKEDGQEYAQV++MLGNGR EAMC DG+KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDD---DDEGGGDAYIEFEDEDIDKI 146
            G  DDD+   DD G        +DEDID I
Sbjct: 121 FGPGDDDEIQFDDIGD-------DDEDIDDI 144

[Close]

BLAST of CaUC02G028270 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 185.3 bits (469), Expect = 5.0e-46
Identity = 101/151 (66.89%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNR+RG    + EKRE+VFKEDGQEYAQV++MLGNGR EAMC DG+KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDD---DDEGGGDAYIEFEDEDIDKI 146
            G  DDD+   DD G        +DEDID I
Sbjct: 121 FGPGDDDEIQFDDIGD-------DDEDIDDI 144

[Close]

BLAST of CaUC02G028270 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 185.3 bits (469), Expect = 5.0e-46
Identity = 101/151 (66.89%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNR+RG    + EKRE+VFKEDGQEYAQV++MLGNGR EAMC DG+KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGL DYQD+KADVILKY +DEAR LKAY ELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDD---DDEGGGDAYIEFEDEDIDKI 146
            G  DDD+   DD G        +DEDID I
Sbjct: 121 FGPGDDDEIQFDDIGD-------DDEDIDDI 144

[Close]

BLAST of CaUC02G028270 vs. ExPASy TrEMBL
Match: A0A5A7UZV0 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00180 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 135/148 (91.22%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. ExPASy TrEMBL
Match: A0A0A0K1Y5 (Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 135/148 (91.22%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. ExPASy TrEMBL
Match: A0A6J1C384 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111007531 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 135/148 (91.22%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL +YQDDKADVILKYM DEARLLKAYSELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. ExPASy TrEMBL
Match: A0A1S3C1S5 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495650 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 135/148 (91.22%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of CaUC02G028270 vs. ExPASy TrEMBL
Match: A0A6J1JL52 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111486190 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.5e-66
Identity = 134/148 (90.54%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE+VFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           GGM   DDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGM---DDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of CaUC02G028270 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 247.3 bits (630), Expect = 7.6e-66
Identity = 125/148 (84.46%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE++FKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           G ++DDDD+++   D Y+EFEDEDID+I
Sbjct: 121 GDLEDDDDNND---DDYVEFEDEDIDRI 145

[Close]

BLAST of CaUC02G028270 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-65
Identity = 126/148 (85.14%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE++FKEDGQEYAQVLRMLGNGRC+ MCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           G +DDDDD     G+ YIEFEDEDID+I
Sbjct: 121 GDLDDDDD---VVGEDYIEFEDEDIDRI 145

[Close]

BLAST of CaUC02G028270 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-65
Identity = 126/148 (85.14%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE++FKEDGQEYAQVLRMLGNGRC+ MCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDDDDEGGGDAYIEFEDEDIDKI 146
           G +DDDDD     G+ YIEFEDEDID+I
Sbjct: 121 GDLDDDDD---VVGEDYIEFEDEDIDRI 145

[Close]

BLAST of CaUC02G028270 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.5e-61
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MPKNNGKGGKNRKRG---TDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCH 60
           MPKN GKGGKNRKRG    DDEKRE++FKEDGQEYAQVLRMLGNGRC+ MCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGL DYQDDKADVILKYMSDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDD 126
           G +DDDDD
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of CaUC02G028270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135622.1	3.2e-66	91.22	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]
XP_004144524.1	3.2e-66	91.22	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PR...	[more]
XP_022930658.1	7.2e-66	90.54	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988...	[more]
XP_022895864.1	8.7e-64	87.84	eukaryotic translation initiation factor 1A-like [Olea europaea var. sylvestris]...	[more]
XP_031490608.1	1.5e-63	87.84	eukaryotic translation initiation factor 1A [Nymphaea colorata]	[more]

BLAST of CaUC02G028270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	1.0e-59	81.88	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	4.4e-58	78.52	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	5.0e-46	66.89	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	5.0e-46	66.89	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	5.0e-46	66.89	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of CaUC02G028270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZV0	1.6e-66	91.22	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K1Y5	1.6e-66	91.22	Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G...	[more]
A0A6J1C384	1.6e-66	91.22	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3C1S5	1.6e-66	91.22	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A6J1JL52	3.5e-66	90.54	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CaUC02G028270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	7.6e-66	84.46	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	1.3e-65	85.14	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	1.3e-65	85.14	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	1.5e-61	89.06	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 25..107 e-value: 9.9E-46 score: 167.9
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 14..107 e-value: 3.8E-32 score: 108.2
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..145
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 14..107 score: 18.054033
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 30..106 e-value: 2.83301E-39 score: 125.329
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 29..90 e-value: 1.2E-21 score: 76.2
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 19..93 score: 30.854507
None	No IPR available	GENE3D	2.40.50.140		coord: 2..145 e-value: 5.2E-51 score: 173.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 1..145
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 38..60
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G028270.1	CaUC02G028270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding