CaUC02G026990 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G026990
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic
LocationCiama_Chr02: 1463404 .. 1463913 (-)
RNA-Seq ExpressionCaUC02G026990
SyntenyCaUC02G026990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Homology
[Close]
BLAST of CaUC02G026990 vs. NCBI nr
Match: XP_038887363.1 (photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 7.3e-78
Identity = 159/169 (94.08%), Postives = 163/169 (96.45%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQTPF PLKPKSTISAAA+ T VRRRDFLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQTPFIPLKPKSTISAAATATTVRRRDFLSLTASVLAPSWVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALA+SD+EYVKDTSEVIGKVR TITMDRNDPNVAAAVAELRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALASSDDEYVKDTSEVIGKVRMTITMDRNDPNVAAAVAELRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CaUC02G026990 vs. NCBI nr
Match: XP_008455335.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] >KAA0031585.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa] >TYK07037.1 photosystem II repair protein PSB27-H1 [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CaUC02G026990 vs. NCBI nr
Match: XP_004136817.1 (photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_020553 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 6.2e-77
Identity = 156/169 (92.31%), Postives = 163/169 (96.45%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CaUC02G026990 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 3.3e-70
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFP 60
           MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKAL 120
            +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of CaUC02G026990 vs. NCBI nr
Match: KAG6572353.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011964.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.6 bits (701), Expect = 5.6e-70
Identity = 149/173 (86.13%), Postives = 159/173 (91.91%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIV----RRRDFLSLTASVLAPSLVLF 60
           MASPTLITP TSKSQ    PLKPKS+I+AAA+TT      RRR+FLSLTASVLAPS VLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLF 60

Query: 61  PQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKA 120
           P +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]
BLAST of CaUC02G026990 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.6e-49
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 0 

Query: 38  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]
BLAST of CaUC02G026990 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 23/98 (23.47%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 69  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of CaUC02G026990 vs. ExPASy TrEMBL
Match: A0A5A7SR30 (Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003550 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CaUC02G026990 vs. ExPASy TrEMBL
Match: A0A1S3C1X2 (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CaUC02G026990 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 156/169 (92.31%), Postives = 163/169 (96.45%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CaUC02G026990 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFP 60
           MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKAL 120
            +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of CaUC02G026990 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0 

Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFP 60
           MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKAL 120
            +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of CaUC02G026990 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 194.5 bits (493), Expect = 6.8e-50
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 0 

Query: 38  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]
BLAST of CaUC02G026990 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 23/98 (23.47%), Postives = 56/98 (57.14%), Query Frame = 0 

Query: 69  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:
BLAST of CaUC02G026990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887363.17.3e-7894.08photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida][more]
XP_008455335.11.2e-7792.90PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo] ... [more]
XP_004136817.16.2e-7792.31photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN4360... [more]
XP_022952622.13.3e-7087.21photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ... [more]
KAG6572353.15.6e-7086.13Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro... [more]
BLAST of CaUC02G026990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LR649.6e-4975.37Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... [more]
Q9ZVZ91.9e-0423.47Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... [more]
BLAST of CaUC02G026990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SR306.0e-7892.90Photosystem II repair protein PSB27-H1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3C1X26.0e-7892.90photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN... [more]
A0A0A0K1S23.0e-7792.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1[more]
A0A6J1HZH11.6e-7087.21photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O... [more]
A0A6J1GKW71.6e-7087.21photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata... [more]
BLAST of CaUC02G026990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03600.16.8e-5075.37photosystem II family protein [more]
AT1G05385.11.4e-0523.47photosystem II 11 kDa protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 64..169
e-value: 3.1E-40
score: 138.9
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 64..165
e-value: 3.3E-32
score: 111.7
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..169
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 43..165
score: 24.029087
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G026990.1CaUC02G026990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071484 cellular response to light intensity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II