CaUC02G026760 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G026760
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr02: 1190572 .. 1190918 (-)
RNA-Seq Expression	CaUC02G026760
Synteny	CaUC02G026760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTCAGAAGGCATCAGCAGTTTCATGCAATAACATCCTTCAGCTATTGGCCTTCATCTTTCTGTTTTTTCTCCTCATCACAACCACAGGTAACTTTTAAGCTTTTGAAATCAAATTATTTATTTTGTTTATTATTATTTATTATTTGGAGAAATAATTGAGTATTAACTTCTTGTTATTGCATGTTGTTAATTAGGTTCTTCGGCGAGAAAGAGTTTGGTAGAAGGGAGGAGCCGAAATGAGGACGATCCATACGCCAAAAACCATGGCGGAGTGCTTGGAAACGACTTGGTGACGATGGATTATACTCCGGCGAGGAAGAACCATCCAATCCATAACTAA

mRNA sequence

ATGGTTCTTCAGAAGGCATCAGCAGTTTCATGCAATAACATCCTTCAGCTATTGGCCTTCATCTTTCTGTTTTTTCTCCTCATCACAACCACAGGTTCTTCGGCGAGAAAGAGTTTGGTAGAAGGGAGGAGCCGAAATGAGGACGATCCATACGCCAAAAACCATGGCGGAGTGCTTGGAAACGACTTGGTGACGATGGATTATACTCCGGCGAGGAAGAACCATCCAATCCATAACTAA

Coding sequence (CDS)

ATGGTTCTTCAGAAGGCATCAGCAGTTTCATGCAATAACATCCTTCAGCTATTGGCCTTCATCTTTCTGTTTTTTCTCCTCATCACAACCACAGGTTCTTCGGCGAGAAAGAGTTTGGTAGAAGGGAGGAGCCGAAATGAGGACGATCCATACGCCAAAAACCATGGCGGAGTGCTTGGAAACGACTTGGTGACGATGGATTATACTCCGGCGAGGAAGAACCATCCAATCCATAACTAA

Protein sequence

MVLQKASAVSCNNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAKNHGGVLGNDLVTMDYTPARKNHPIHN

Homology

[Close]

BLAST of CaUC02G026760 vs. NCBI nr
Match: KGN62099.1 (hypothetical protein Csa_006414 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-29
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MVLQKASAVSCNNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAKNHGGVLG 60
          MVL+K  A SCNN+LQLLAFIFLFFLLITTTGSSAR SLVEGRSRN+DDPY KNH GV+G
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSAR-SLVEGRSRNDDDPYVKNHSGVIG 60

Query: 61 NDLVTMDYTPARKNHPIHN 80
          NDLVTMDYTPARKNHPIHN
Sbjct: 61 NDLVTMDYTPARKNHPIHN 78

[Close]

BLAST of CaUC02G026760 vs. NCBI nr
Match: KAG6571378.1 (hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 7.2e-20
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 2  VLQKASAVSCNNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAKNHGGVLGN 61
          +++K SAVSCN  LQLL FIFLFFLL+T TGSS  + L+EG SR E++P  +NH GVLGN
Sbjct: 1  MVEKVSAVSCNGFLQLLLFIFLFFLLVTATGSSGGRRLIEGTSRTEENPLVENHDGVLGN 60

Query: 62 DLVTMDYTPARKNHPIHN 80
          DLVTM YT A+ N P+HN
Sbjct: 61 DLVTMHYTSAKSNRPVHN 78

[Close]

BLAST of CaUC02G026760 vs. NCBI nr
Match: KAG6605285.1 (hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 2  VLQKASAVSCNNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAKNHGGVL-- 61
          ++ KAS +S   +L+LL+ +FLF LLITTTGS   ++L+E    +E+DP     GG L  
Sbjct: 1  MVMKASKLSFYRLLRLLSLLFLFILLITTTGSLGGRTLLEKTGHSEEDPLDIVRGGGLEN 60

Query: 62 GNDLVTMDYTPARKNHPIHN 80
           NDLVTMDYTPA KN PIHN
Sbjct: 61 ANDLVTMDYTPATKNRPIHN 80

[Close]

BLAST of CaUC02G026760 vs. NCBI nr
Match: KAG6605284.1 (hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 2  VLQKASAVSCNNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAK-NHGGVLG 61
          ++ KAS +SC  +L+LL  +FLF LL+TT GS    SL+E    +E+D  A  +HGG L 
Sbjct: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSEEDQLATISHGGALE 60

Query: 62 N--DLVTMDYTPARKNHPIHN 80
          N  DL  MDYTPA  + P+HN
Sbjct: 61 NAYDLGAMDYTPAGPSPPVHN 81

[Close]

BLAST of CaUC02G026760 vs. NCBI nr
Match: KAG6605283.1 (hypothetical protein SDJN03_02600, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 12 NNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAKNHGGVLGN--DLVTMDYT 71
          + +L  LA +FLF LL+T   S   + L+E     E+D    +HGG L N    + MDYT
Sbjct: 6  STLLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFLAMDYT 65

Query: 72 PARKNHPIHN 80
          P++ N P+HN
Sbjct: 66 PSKANRPVHN 75

[Close]

BLAST of CaUC02G026760 vs. ExPASy TrEMBL
Match: A0A0A0LM46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MVLQKASAVSCNNILQLLAFIFLFFLLITTTGSSARKSLVEGRSRNEDDPYAKNHGGVLG 60
          MVL+K  A SCNN+LQLLAFIFLFFLLITTTGSSAR SLVEGRSRN+DDPY KNH GV+G
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSAR-SLVEGRSRNDDDPYVKNHSGVIG 60

Query: 61 NDLVTMDYTPARKNHPIHN 80
          NDLVTMDYTPARKNHPIHN
Sbjct: 61 NDLVTMDYTPARKNHPIHN 78

[Close]

BLAST of CaUC02G026760 vs. ExPASy TrEMBL
Match: A0A444ZXP2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g063575 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 12 NNILQLLAFIFLFFLLITTTGSSARK------SLVEGRSRNEDDPYAKNHGG---VLGND 71
          N +L ++AF+ L F+ +T  G S R+       + +G   ++ + + +NH G   ++  D
Sbjct: 9  NRLLLVVAFLLLCFMSMTARGRSLREIATNKNGVDDGEKGHQSNVFKRNHEGTQEIISGD 68

Query: 72 LVTMDYTPARKNHPIHN 80
          + TMDYTPA+KN PIHN
Sbjct: 69 IDTMDYTPAKKNPPIHN 85

The following BLAST results are available for this feature:

BLAST of CaUC02G026760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62099.1	2.9e-29	87.34	hypothetical protein Csa_006414 [Cucumis sativus]	[more]
KAG6571378.1	7.2e-20	64.10	hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605285.1	2.7e-11	53.75	hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605284.1	2.2e-08	48.15	hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605283.1	3.2e-04	40.00	hypothetical protein SDJN03_02600, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CaUC02G026760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G026760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM46	1.4e-29	87.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1	[more]
A0A444ZXP2	4.6e-04	36.36	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g063575 PE=4 SV=1	[more]

BLAST of CaUC02G026760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..58
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 10..79
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 10..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G026760.1	CaUC02G026760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity