CaUC02G025830 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G025830
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Trafficking protein particle complex subunit 2-like
Location	Ciama_Chr02: 105756 .. 106516 (+)
RNA-Seq Expression	CaUC02G025830
Synteny	CaUC02G025830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAATTTTGTCTTACGAAAACTAACAAATTCTAGATTTAAGTATTTTACAATGAATATTTATTTTAAGGATTTTTGAAATGCAACCATTTAAAGGTAGCTATTTTTGTGATCAACCCTAAAGCTGAGGGATACACAAACCCAGCCCATCTCGCGCCCCTCTCGCATCCGAGCCCAGCCCGCCCCCTCCCCTTAACTCTCTGTCATCTCACTCCACCGGAAACCTCCCGAACTGCTGCTCAGAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATCTATGAAGCTGAAGTCGGATCTGCTGTTAAAGTATTTTCTTCTTCTTCATTTTCCATTTCTTTTCATGTTTAGGCTGAATATTTCCTTCACAAGATCGCCAATAATAGGTGATCTCGTTTTGATTCTTTAATTACTTTAGTTTTGACTGTCATTAGTCGCTCATCTTTTTGGCTTGACATGAAAGAGAGAGGATTCCGCTCAGCTGCATCAGTTTATATTGCATGCGTCCCTCGACATTGTTCAAGACCTGGCATGGACAACTAGTGCTATGTGAGTTCGTATTCCTTTTAGTTTTTTATTTAATCATCGAGACATCTCCTTTCTCTTCTTTTTCTTTTTTGTTTTTTCCTTTGAATTTCGCCTTAGATCCCTTTTCTTGTTGCGGTTTATGCAGGTTCTTGAAAGCAGTCGATAGGTTCAATGACTTGGTCGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAA

mRNA sequence

GGTAATTTTGTCTTACGAAAACTAACAAATTCTAGATTTAAGTATTTTACAATGAATATTTATTTTAAGGATTTTTGAAATGCAACCATTTAAAGGTAGCTATTTTTGTGATCAACCCTAAAGCTGAGGGATACACAAACCCAGCCCATCTCGCGCCCCTCTCGCATCCGAGCCCAGCCCGCCCCCTCCCCTTAACTCTCTGTCATCTCACTCCACCGGAAACCTCCCGAACTGCTGCTCAGAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATCTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATATTGCATGCGTCCCTCGACATTGTTCAAGACCTGGCATGGACAACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGACTTGGTCGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAA

Coding sequence (CDS)

ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATCTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATATTGCATGCGTCCCTCGACATTGTTCAAGACCTGGCATGGACAACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGACTTGGTCGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAA

Protein sequence

MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL

Homology

[Close]

BLAST of CaUC02G025830 vs. NCBI nr
Match: KGN62236.1 (hypothetical protein Csa_016951 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGHIL 80
          VDRFNDLVVSVYVTAGHIL
Sbjct: 61 VDRFNDLVVSVYVTAGHIL 79

[Close]

BLAST of CaUC02G025830 vs. NCBI nr
Match: KAG7034830.1 (Trafficking protein particle complex subunit 2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 3.9e-34
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGHIL 80
          VDRFNDLVVSVYVTAGHIL
Sbjct: 61 VDRFNDLVVSVYVTAGHIL 79

[Close]

BLAST of CaUC02G025830 vs. NCBI nr
Match: XP_038900562.1 (transport protein particle 20 kDa subunit [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 8.8e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

[Close]

BLAST of CaUC02G025830 vs. NCBI nr
Match: XP_004147330.1 (transport protein particle 20 kDa subunit [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 8.8e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

[Close]

BLAST of CaUC02G025830 vs. NCBI nr
Match: XP_022970900.1 (trafficking protein particle complex subunit 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

[Close]

BLAST of CaUC02G025830 vs. ExPASy Swiss-Prot
Match: P0DI81 (Trafficking protein particle complex subunit 2 OS=Homo sapiens OX=9606 GN=TRAPPC2 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-12
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61 LKAVDRFNDLVVSVYVTAGHI 79
          LK VD+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

[Close]

BLAST of CaUC02G025830 vs. ExPASy Swiss-Prot
Match: P0DI82 (Trafficking protein particle complex subunit 2B OS=Homo sapiens OX=9606 GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-12
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61 LKAVDRFNDLVVSVYVTAGHI 79
          LK VD+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

[Close]

BLAST of CaUC02G025830 vs. ExPASy Swiss-Prot
Match: Q3T0F2 (Trafficking protein particle complex subunit 2 OS=Bos taurus OX=9913 GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-12
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61 LKAVDRFNDLVVSVYVTAGHI 79
          LK VD+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

[Close]

BLAST of CaUC02G025830 vs. ExPASy Swiss-Prot
Match: E2QV03 (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris OX=9615 GN=TRAPPC2 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-12
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61 LKAVDRFNDLVVSVYVTAGHI 79
          LK VD+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

[Close]

BLAST of CaUC02G025830 vs. ExPASy Swiss-Prot
Match: F1SRI0 (Trafficking protein particle complex subunit 2 OS=Sus scrofa OX=9823 GN=TRAPPC2 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-12
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61 LKAVDRFNDLVVSVYVTAGHI 79
          LK VD+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

[Close]

BLAST of CaUC02G025830 vs. ExPASy TrEMBL
Match: A0A0A0LQF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338800 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGHIL 80
          VDRFNDLVVSVYVTAGHIL
Sbjct: 61 VDRFNDLVVSVYVTAGHIL 79

[Close]

BLAST of CaUC02G025830 vs. ExPASy TrEMBL
Match: A0A6J1I468 (trafficking protein particle complex subunit 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469735 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

[Close]

BLAST of CaUC02G025830 vs. ExPASy TrEMBL
Match: A0A6J1I1U1 (transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469735 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

[Close]

BLAST of CaUC02G025830 vs. ExPASy TrEMBL
Match: A0A6J1G7X4 (transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451547 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

[Close]

BLAST of CaUC02G025830 vs. ExPASy TrEMBL
Match: A0A6J1G7K7 (trafficking protein particle complex subunit 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451547 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

[Close]

BLAST of CaUC02G025830 vs. TAIR 10
Match: AT1G80500.1 (SNARE-like superfamily protein )

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-34
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MA TACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 VDRFNDLVVSVYVTAGH 78
          VDRFNDLVVSVYVTAGH
Sbjct: 61 VDRFNDLVVSVYVTAGH 77

The following BLAST results are available for this feature:

BLAST of CaUC02G025830 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62236.1	1.4e-34	100.00	hypothetical protein Csa_016951 [Cucumis sativus]	[more]
KAG7034830.1	3.9e-34	98.73	Trafficking protein particle complex subunit 2B [Cucurbita argyrosperma subsp. a...	[more]
XP_038900562.1	8.8e-34	100.00	transport protein particle 20 kDa subunit [Benincasa hispida]	[more]
XP_004147330.1	8.8e-34	100.00	transport protein particle 20 kDa subunit [Cucumis sativus]	[more]
XP_022970900.1	2.6e-33	98.70	trafficking protein particle complex subunit 2 isoform X1 [Cucurbita maxima]	[more]

BLAST of CaUC02G025830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DI81	3.4e-12	41.98	Trafficking protein particle complex subunit 2 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]
P0DI82	3.4e-12	41.98	Trafficking protein particle complex subunit 2B OS=Homo sapiens OX=9606 GN=TRAPP...	[more]
Q3T0F2	3.4e-12	41.98	Trafficking protein particle complex subunit 2 OS=Bos taurus OX=9913 GN=TRAPPC2 ...	[more]
E2QV03	3.4e-12	41.98	Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris OX=9615...	[more]
F1SRI0	3.4e-12	41.98	Trafficking protein particle complex subunit 2 OS=Sus scrofa OX=9823 GN=TRAPPC2 ...	[more]

BLAST of CaUC02G025830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQF1	6.5e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338800 PE=4 SV=1	[more]
A0A6J1I468	1.2e-33	98.70	trafficking protein particle complex subunit 2 isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1I1U1	1.2e-33	98.70	transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1G7X4	1.2e-33	98.70	transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita moschata OX=36...	[more]
A0A6J1G7K7	1.2e-33	98.70	trafficking protein particle complex subunit 2 isoform X1 OS=Cucurbita moschata ...	[more]

BLAST of CaUC02G025830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80500.1	1.4e-34	89.61	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.70		coord: 1..79 e-value: 7.5E-28 score: 99.4
None	No IPR available	PANTHER	PTHR12403:SF28	BNAC06G40500D PROTEIN	coord: 1..79
None	No IPR available	CDD	cd14825	TRAPPC2_sedlin	coord: 4..78 e-value: 4.00168E-35 score: 113.779
IPR006722	Trafficking protein particle complex subunit 2	PFAM	PF04628	Sedlin_N	coord: 9..78 e-value: 1.9E-20 score: 73.3
IPR006722	Trafficking protein particle complex subunit 2	PANTHER	PTHR12403	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2	coord: 1..79
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G025830.1	CaUC02G025830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component	GO:0005737	cytoplasm