CaUC01G024660 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G024660
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionF-box protein SKIP19-like
LocationCiama_Chr01: 36610098 .. 36611780 (+)
RNA-Seq ExpressionCaUC01G024660
SyntenyCaUC01G024660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCGACCTCCATCAATAAGCAGGCGGAAGCGCAACCGAGCAACTGGCTCGAACTGCCTGCAGATGTAATGTCTATGATTCTGCTGAAGCTAGGCGCCATTGAAATCCTTACCAGCGCTCAAAACGTCTGCTCGTCCTGGCGTAAGATCTGCAAGGATCCTCTCATGTGGCGTGTCATCGATATATATGCAGGGTTTGAGCTGTTTTCATTGGATGAAGTACAACTTGGAGGTTATGTGCAAGCACGCTGTTAATCGTAGTTGTGGCCAATTGGTTGAAATCAACATTGAGTACTTTGGCACCGATAAGTTGCTCCAATACATCAGTCAGAGGTATCGATTCTATCTGCTCCACTGCAGCTCTTTAGTCTTTCTCGGTATTTTGAGTTGTTTCGTTATCTTAATCTACTTTTATGGTTCTTTCTATAATCTTGTGTAGTTTGTTTGATAATTTAAATCATTCTATGTTTTGATGTTCTGGCTACTGCATGCATCTTGAATTGTGGTTTAAATTTTATCTTGTTTCCGGCTTTTATGATTTCAATTGTTCTGTTTTTTGTCTGAAGTTCGAGTTAGAATCTGCTTTTGTTCTTCGTTATTATATTTCTGTTGTGTGTGATATATCAGAGGCGCTCCATTTCCATACTCAATATCAAATACGGTGAGGGTATATTTGGAGAATCATGTCATTTTCAACTTTTGAACATGCTTTTAATCAATCAATAGGAAATTTTATTTAAAACTGCAAAATTAAATATAAAATTAATTTTTAATAATTAAAGATGTGTTTTAGATTGATTTTGAGCCTGACAAAAATGATATTGTGGCCTGGAACTTAACATTTCTGTTTAATGTAATTCGACTTTATGCAAGAAGATACTATTCATCCTTTTCCCAAAAGAATTGTCCAATATTTCATTACAATTTCTAACCTTGCACCGAGCATTTGTAATTCCATTTGATAGAAAATAATTTTCCACTATCCCAAATGGAGAGCATCCTCTAGTTAGAAAATTGTTTGAAACTGTTTTCTTATTGTGACATCATTCGTCAAGCAAGTTTTATATTTCATATTTCATTGGTTTTGATGTTTTTTTCTATATATTCACTTGTTGCAGTTCAAATCAACTTAGAAGTCTCCGGCTTTTATATTGCTCTCGCATTTCTTTCAAGACCATCTCTCAAGCAGTTTCAAAACTTCCATTGTTGGAGCATCTTGAACTAACAAACTGTTTTTATTTTGTGTAACACTTGAGAATTGTTGGACGGTGTTGCCCTCTTCTGAAATCGCTGAATCTGAACAAACGGTTTCCCAGACGAGGGATGGGTTGTGACGTCGAGGCCATTGCCATTGCTAAATCTATGCCTAATTTACGTCACCTTCAAATGTTGGGCAATGACCTAACTGAGATTGGCTTGCAGGCCATTCTTGATAGTTGTCTTGATTTAGAATCTCTCGACTTACGCCGATGTTTCAAGTTAGTTTTGCTGGCGGAACAGTTGAGACAAAAATGTGCTGGAAGGATCAAAATTTTGCATCTGCCTCATGAACCCGTCGATGGCTATGACAGCAAAACTAGCGATGCAAGTGTTTATGAAGATTATTGGGATCATAATGTCGAGACTACTGTTTCCCTGATGATGACGAATATCCAGAATATTAATAACATTGGACGTTAG

mRNA sequence

ATGAAGTCGACCTCCATCAATAAGCAGGCGGAAGCGCAACCGAGCAACTGGCTCGAACTGCCTGCAGATGTAATGTCTATGATTCTGCTGAAGCTAGGCGCCATTGAAATCCTTACCAGCGCTCAAAACGTCTGCTCGTCCTGGCGTAAGATCTGCAAGGATCCTCTCATGTGGCGTGTCATCGATATATATGCAGGGTTTGAGCTGTTTTCATTGGATGAAGTACAACTTGGAGAATCTGCTTTTGTTCTTCGTTATTATATTTCTGTTGTGTGTGATATATCAGAGGCGCTCCATTTCCATACTCAATATCAAATACGACGAGGGATGGGTTGTGACGTCGAGGCCATTGCCATTGCTAAATCTATGCCTAATTTACGTCACCTTCAAATGTTGGGCAATGACCTAACTGAGATTGGCTTGCAGGCCATTCTTGATAGTTGTCTTGATTTAGAATCTCTCGACTTACGCCGATGTTTCAAGTTAGTTTTGCTGGCGGAACAGTTGAGACAAAAATGTGCTGGAAGGATCAAAATTTTGCATCTGCCTCATGAACCCGTCGATGGCTATGACAGCAAAACTAGCGATGCAAGTGTTTATGAAGATTATTGGGATCATAATGTCGAGACTACTGTTTCCCTGATGATGACGAATATCCAGAATATTAATAACATTGGACGTTAG

Coding sequence (CDS)

ATGAAGTCGACCTCCATCAATAAGCAGGCGGAAGCGCAACCGAGCAACTGGCTCGAACTGCCTGCAGATGTAATGTCTATGATTCTGCTGAAGCTAGGCGCCATTGAAATCCTTACCAGCGCTCAAAACGTCTGCTCGTCCTGGCGTAAGATCTGCAAGGATCCTCTCATGTGGCGTGTCATCGATATATATGCAGGGTTTGAGCTGTTTTCATTGGATGAAGTACAACTTGGAGAATCTGCTTTTGTTCTTCGTTATTATATTTCTGTTGTGTGTGATATATCAGAGGCGCTCCATTTCCATACTCAATATCAAATACGACGAGGGATGGGTTGTGACGTCGAGGCCATTGCCATTGCTAAATCTATGCCTAATTTACGTCACCTTCAAATGTTGGGCAATGACCTAACTGAGATTGGCTTGCAGGCCATTCTTGATAGTTGTCTTGATTTAGAATCTCTCGACTTACGCCGATGTTTCAAGTTAGTTTTGCTGGCGGAACAGTTGAGACAAAAATGTGCTGGAAGGATCAAAATTTTGCATCTGCCTCATGAACCCGTCGATGGCTATGACAGCAAAACTAGCGATGCAAGTGTTTATGAAGATTATTGGGATCATAATGTCGAGACTACTGTTTCCCTGATGATGACGAATATCCAGAATATTAATAACATTGGACGTTAG

Protein sequence

MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDIYAGFELFSLDEVQLGESAFVLRYYISVVCDISEALHFHTQYQIRRGMGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRIKILHLPHEPVDGYDSKTSDASVYEDYWDHNVETTVSLMMTNIQNINNIGR
Homology
BLAST of CaUC01G024660 vs. NCBI nr
Match: KAG6581459.1 (F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-38
Identity = 109/274 (39.78%), Postives = 140/274 (51.09%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S       +  NWLELPADV SMILLKLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 61  ID-----------------------------IYAGFELFSLDEV--QLGESAFVLRYYIS 120
           +D                             IY   E F  D++   + +S+  LR    
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYINIEHFGTDDLLQYITQSSNELRKLRL 122

Query: 121 VVCD----------------------------------------ISEALHFHTQYQIRRG 180
           V C+                                        + ++L  + Q+   R 
Sbjct: 123 VYCNRISDEGLIKAVSKLPLLEDLEISFGSFDVETLETLGQCRPLLKSLKLNRQFY--RR 182

Query: 181 MGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQL 204
           + CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CF L  LA QL
Sbjct: 183 VECDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNL-NLAGQL 242

BLAST of CaUC01G024660 vs. NCBI nr
Match: XP_022978592.1 (F-box protein SKIP19-like [Cucurbita maxima])

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-38
Identity = 109/274 (39.78%), Postives = 140/274 (51.09%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S       +  NWLELPADV SMILLKLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 61  ID-----------------------------IYAGFELFSLDEV--QLGESAFVLRYYIS 120
           +D                             IY   E F  D++   + +S+  LR    
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYINIEHFGTDDLLQYITQSSNQLRKLRL 122

Query: 121 VVCD----------------------------------------ISEALHFHTQYQIRRG 180
           V C+                                        + ++L  + Q+   R 
Sbjct: 123 VYCNRISDEGFIKAVSKLPLLEDLEISFGSFDVETLETLGHCRPLLKSLKLNRQFY--RR 182

Query: 181 MGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQL 204
           + CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CF L  LA QL
Sbjct: 183 VECDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNL-NLAGQL 242

BLAST of CaUC01G024660 vs. NCBI nr
Match: KAG7034751.1 (Protein BREAST CANCER SUSCEPTIBILITY 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-38
Identity = 109/274 (39.78%), Postives = 140/274 (51.09%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S       +  NWLELPADV SMILLKLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 61  ID-----------------------------IYAGFELFSLDEV--QLGESAFVLRYYIS 120
           +D                             IY   E F  D++   + +S+  LR    
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYINIEHFGTDDLLQYITQSSNQLRKLRL 122

Query: 121 VVCD----------------------------------------ISEALHFHTQYQIRRG 180
           V C+                                        + ++L  + Q+   R 
Sbjct: 123 VYCNRISDEGLIKAVSKLPLLEDLEISFGSFDVETLETLGQCRPLLKSLKLNRQFY--RR 182

Query: 181 MGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQL 204
           + CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CF L  LA QL
Sbjct: 183 VECDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNL-NLAGQL 242

BLAST of CaUC01G024660 vs. NCBI nr
Match: XP_023543623.1 (F-box protein SKIP19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 3.4e-38
Identity = 109/274 (39.78%), Postives = 140/274 (51.09%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S       +  NWLELPADV SMILLKLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 61  ID-----------------------------IYAGFELFSLDEV--QLGESAFVLRYYIS 120
           +D                             IY   E F  D++   + +S+  LR    
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYINIEHFGTDDLLHYITQSSNQLRKLRL 122

Query: 121 VVCD----------------------------------------ISEALHFHTQYQIRRG 180
           V C+                                        + ++L  + Q+   R 
Sbjct: 123 VYCNRISDEGLIKAVSKLPLLEDLEISFGSFDVETLETLGQCRPLLKSLKLNRQFY--RR 182

Query: 181 MGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQL 204
           + CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CF L  LA QL
Sbjct: 183 VECDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNL-NLAGQL 242

BLAST of CaUC01G024660 vs. NCBI nr
Match: XP_038883784.1 (F-box protein SKIP19-like [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 4.4e-38
Identity = 114/288 (39.58%), Postives = 145/288 (50.35%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S     E +  NWLELPADVMSMIL KLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 1   MESNSNPNSVEEESRNWLELPADVMSMILHKLGPVDILTNAQDVCSSWRKICEDPLMWRV 60

Query: 61  IDI-YAG------FELFSLDEVQLGESAFVLRYYISVVCDISEALHFHTQ---------- 120
           ID+ Y+G      ++L  L    +G S   L           + LH+ TQ          
Sbjct: 61  IDMRYSGDWWDMDYDLEELCRQAVGRSCGQLVDINIEHFGTDDLLHYITQSSNQLSRLRL 120

Query: 121 ----------------------------------------------------YQIRRGMG 180
                                                                Q  R + 
Sbjct: 121 VYCNRISDEGLIEAVSRLPLLEDLELSFCSFDVETLGTLGQSCPGLKSLKLNRQFYRRVE 180

Query: 181 CDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQ 220
           CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C  LESLDLR+CF L  LA QL  
Sbjct: 181 CDKGALAIAENMPNLRHLQIFGNSLTNSGLEAILDGCPALESLDLRQCFNL-NLAGQLGT 240

BLAST of CaUC01G024660 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.0e-26
Identity = 79/259 (30.50%), Postives = 123/259 (47.49%), Query Frame = 0

Query: 13  QPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDIYAGFELFSL 72
           + +NW ELP ++ S IL +LGAIEIL +AQ VC SWR++CKDP MWR ID++   +L  +
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 73  D-----------EVQLGESAFVLRYYISVVCDISEALHFHTQYQIRRGMGC--------- 132
           D           +   G    +  +Y   V  ++   H  +  +  R + C         
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 133 ----------------------------------------------DVEAIAIAKSMPNL 192
                                                         D +A+AIA++MP L
Sbjct: 135 EAVVKLPLEELELSYCSFSVESLRVVGQCCLNMKTLKLNKHPQKENDDDALAIAETMPKL 194

Query: 193 RHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRIKILHLPHEP 206
           RHLQ+ GN L++ GL AILD+C +LE LDLRRCF + L+ + L+++C   +K++  P++ 
Sbjct: 195 RHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGD-LQKRCFESVKVVRHPNDS 254

BLAST of CaUC01G024660 vs. ExPASy Swiss-Prot
Match: Q9M0U6 (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.9e-26
Identity = 85/254 (33.46%), Postives = 119/254 (46.85%), Query Frame = 0

Query: 9   QAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVID------ 68
           + E +PSNW ELP D++S ILL+L  +EIL +A+ VC SWR++ KDPL+WR ID      
Sbjct: 19  KGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRR 78

Query: 69  ---IYA--------------GFELFSLDEVQLGESAFVLRYYIS---------------- 128
              IYA              G   F++D+ +  ++  +L Y                   
Sbjct: 79  LYCIYAMEACCRHVVDLSQGGLLEFNIDQWRF-QTTSLLNYMAERSSNLRRLRVKGGQIT 138

Query: 129 -------------------VVCDISEALHFHTQYQIRRGM-------------GCDVEAI 188
                              + C I E  HF T  Q    +               D +A+
Sbjct: 139 SVGIFEAIVKLPLLEELELLYCSIEEE-HFKTIGQACPNLKTLKLVGFWSHLNESDNDAL 198

Query: 189 AIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRI 192
           AIA +MP L HLQ++ N LT IGL AILD C  LE LDLR+CF + L  + L ++C  RI
Sbjct: 199 AIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGD-LERQCLERI 258

BLAST of CaUC01G024660 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.0e-26
Identity = 88/256 (34.38%), Postives = 115/256 (44.92%), Query Frame = 0

Query: 16  NWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDI-----YAGFEL- 75
           NW ELP+ + S ILL+LGAIEIL +AQ VC  W ++CKDP MWR IDI      A F+  
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYD 239

Query: 76  ------FSLDEVQLGESAFVLRYY-----ISVVCDISEAL-------------------- 135
                  ++D    G     + YY     I  + D S  L                    
Sbjct: 240 LESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAV 299

Query: 136 -------HFHTQYQIRRG----------------------------MGCDVEAIAIAKSM 195
                  +    Y +  G                             G D  A AIA+SM
Sbjct: 300 SKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESM 359

Query: 196 PNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRIKILHLP 200
           P LRHLQ+LGN LT  GL AILD C  LE LDLR+CF + L+ + L+++C  RIK L  P
Sbjct: 360 PELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGD-LKKRCFERIKDLRCP 419

BLAST of CaUC01G024660 vs. ExPASy Swiss-Prot
Match: Q9M0U7 (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-23
Identity = 83/277 (29.96%), Postives = 125/277 (45.13%), Query Frame = 0

Query: 3   STSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWR--- 62
           ST   K+ + +  NW++LP ++ + ILL+L   +IL +A+ +C +WR+ICKDP MWR   
Sbjct: 26  STMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKIN 85

Query: 63  -----------------VIDIYAG------FELFSLDEV------------QLGESAF-- 122
                            ++D+  G       E F  D +             LG S +  
Sbjct: 86  LRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEP 145

Query: 123 ------------------VLRYYISVVCDI-------------------SEALHFHTQYQ 182
                             ++ ++ S+  D+                   SE  H  +Q  
Sbjct: 146 MTNKGVMNGIEKLPLLETLVIFHSSIKLDLKAIGHACPQLKTLKLNSLGSELAHDISQVG 205

Query: 183 IRRGMGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLES-LDLRRCFKLVL 202
               + CD +A+AIA+SMP LRHLQ++GN LT  GL AILD C  LE  LD+R+CF + L
Sbjct: 206 YIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINL 265

BLAST of CaUC01G024660 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.2e-19
Identity = 70/224 (31.25%), Postives = 99/224 (44.20%), Query Frame = 0

Query: 16  NWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDI------YAGFEL 75
           NW ELP ++ S ILL+LGAIEIL +AQ VC SWR++C+DP MWR IDI          EL
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 76  FSLDE--------------VQLGESAFVLRYYISVVCDIS-------------------- 135
           F + E              +++     V   +++ + D S                    
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query: 136 ---------EALHFHTQYQIRR------GMG-----------------CDVEAIAIAKSM 168
                    E L    +  IR       G                   CD  A+AIA++M
Sbjct: 140 EAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKCCDKVALAIAETM 199

BLAST of CaUC01G024660 vs. ExPASy TrEMBL
Match: A0A6J1ILH5 (F-box protein SKIP19-like OS=Cucurbita maxima OX=3661 GN=LOC111478528 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-38
Identity = 109/274 (39.78%), Postives = 140/274 (51.09%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S       +  NWLELPADV SMILLKLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 61  ID-----------------------------IYAGFELFSLDEV--QLGESAFVLRYYIS 120
           +D                             IY   E F  D++   + +S+  LR    
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYINIEHFGTDDLLQYITQSSNQLRKLRL 122

Query: 121 VVCD----------------------------------------ISEALHFHTQYQIRRG 180
           V C+                                        + ++L  + Q+   R 
Sbjct: 123 VYCNRISDEGFIKAVSKLPLLEDLEISFGSFDVETLETLGHCRPLLKSLKLNRQFY--RR 182

Query: 181 MGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQL 204
           + CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CF L  LA QL
Sbjct: 183 VECDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNL-NLAGQL 242

BLAST of CaUC01G024660 vs. ExPASy TrEMBL
Match: A0A6J1EGI8 (F-box protein SKIP19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433172 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 109/274 (39.78%), Postives = 140/274 (51.09%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S       +  NWLELPADV SMILLKLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 61  ID-----------------------------IYAGFELFSLDEV--QLGESAFVLRYYIS 120
           +D                             IY   E F  D++   + +S+  LR    
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYIKIEHFGTDDLLQYITQSSNQLRELRL 122

Query: 121 VVCD----------------------------------------ISEALHFHTQYQIRRG 180
           V C+                                        + ++L  + Q+   R 
Sbjct: 123 VYCNRISDEGLIKAVSKLPLLEDLEISFGSFDVETLETLGQCRPLLKSLKLNRQFY--RR 182

Query: 181 MGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQL 204
           + CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CF L  LA QL
Sbjct: 183 VECDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNL-NLAGQL 242

BLAST of CaUC01G024660 vs. ExPASy TrEMBL
Match: A0A6J1ECV6 (F-box protein SKIP19-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433172 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 109/274 (39.78%), Postives = 140/274 (51.09%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S       +  NWLELPADV SMILLKLG ++ILT+AQ+VCSSWRKIC+DPLMWRV
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 61  ID-----------------------------IYAGFELFSLDEV--QLGESAFVLRYYIS 120
           +D                             IY   E F  D++   + +S+  LR    
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYIKIEHFGTDDLLQYITQSSNQLRELRL 122

Query: 121 VVCD----------------------------------------ISEALHFHTQYQIRRG 180
           V C+                                        + ++L  + Q+   R 
Sbjct: 123 VYCNRISDEGLIKAVSKLPLLEDLEISFGSFDVETLETLGQCRPLLKSLKLNRQFY--RR 182

Query: 181 MGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQL 204
           + CD  A+AIA++MPNLRHLQ+ GN LT  GL+AILD C DLESLDLR+CF L  LA QL
Sbjct: 183 VECDKGALAIAENMPNLRHLQIFGNSLTNRGLEAILDGCPDLESLDLRQCFNL-NLAGQL 242

BLAST of CaUC01G024660 vs. ExPASy TrEMBL
Match: A0A6J1CXS5 (F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 114/264 (43.18%), Postives = 141/264 (53.41%), Query Frame = 0

Query: 16  NWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDIY----------- 75
           NWLELPAD+ SMILLKLGAIEIL+SAQ+VCS WRKICKDPLMWRV+D++           
Sbjct: 13  NWLELPADITSMILLKLGAIEILSSAQSVCSLWRKICKDPLMWRVVDMHNMGEWDMDYDL 72

Query: 76  -----------------AGFELFSLDEV--QLGESAFVLRYYISVVC------DISEA-- 135
                               + F  +E+   + +S+  LR    V C       +SEA  
Sbjct: 73  EQMCIQAVDRSCGELIDINIQYFGTNELLQYITQSSNQLRRLRIVRCHSITDTGLSEAVS 132

Query: 136 ---LHFHTQYQI----------------------------RRGM-GCDVEAIAIAKSMPN 195
              L  H +  +                            RRGM  CD +AIAIA++MPN
Sbjct: 133 KLPLLEHLEISLCSFTEKTLETVGRCCRLLKSLKLDCQDCRRGMIDCDRDAIAIAENMPN 192

Query: 196 LRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRIKILHLPHE 204
           LR+LQ+ G+ LT+ GLQAILD C DLESLDLR+CF L L+  QL  +CA RIK L LPH+
Sbjct: 193 LRYLQIFGSSLTDRGLQAILDGCPDLESLDLRQCFNLDLVG-QLGVECAERIKHLRLPHD 252

BLAST of CaUC01G024660 vs. ExPASy TrEMBL
Match: A0A5D3CNY7 (F-box protein SKIP19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009390 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 88/190 (46.32%), Postives = 124/190 (65.26%), Query Frame = 0

Query: 1   MKSTSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60
           M+S S+ ++ EA   NWLELPADV+ MIL KLG IEILT+AQNVC  W KICKDPL+W V
Sbjct: 1   MESASMIRKPEAPARNWLELPADVIFMILQKLGTIEILTTAQNVCFLWYKICKDPLLWCV 60

Query: 61  IDIYAGFELFSLDEVQLGESAFVLRYYISVVCDISEALHFHTQYQIRRGMGCDVEAIAIA 120
           ID++   +L S D +++     + ++ +   C +               +  D +A+AIA
Sbjct: 61  IDMHNSGDLNSFDHLEI-----MCKHAVERTCGLF--------------ISSDEDALAIA 120

Query: 121 KSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRIKIL 180
           ++MP L HL+++GN +T  GL A+LDSC DL+SLDLR+C + +   E L++KC+ RIK L
Sbjct: 121 QTMPKLHHLEIVGNRITNFGLHALLDSCSDLQSLDLRKC-RYLDFEELLKKKCSERIKTL 170

Query: 181 HLP-HEPVDG 190
            LP  EPV+G
Sbjct: 181 RLPADEPVNG 170

BLAST of CaUC01G024660 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-27
Identity = 79/259 (30.50%), Postives = 123/259 (47.49%), Query Frame = 0

Query: 13  QPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDIYAGFELFSL 72
           + +NW ELP ++ S IL +LGAIEIL +AQ VC SWR++CKDP MWR ID++   +L  +
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 73  D-----------EVQLGESAFVLRYYISVVCDISEALHFHTQYQIRRGMGC--------- 132
           D           +   G    +  +Y   V  ++   H  +  +  R + C         
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 133 ----------------------------------------------DVEAIAIAKSMPNL 192
                                                         D +A+AIA++MP L
Sbjct: 135 EAVVKLPLEELELSYCSFSVESLRVVGQCCLNMKTLKLNKHPQKENDDDALAIAETMPKL 194

Query: 193 RHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRIKILHLPHEP 206
           RHLQ+ GN L++ GL AILD+C +LE LDLRRCF + L+ + L+++C   +K++  P++ 
Sbjct: 195 RHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGD-LQKRCFESVKVVRHPNDS 254

BLAST of CaUC01G024660 vs. TAIR 10
Match: AT4G05490.1 (RNI-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-27
Identity = 85/254 (33.46%), Postives = 119/254 (46.85%), Query Frame = 0

Query: 9   QAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVID------ 68
           + E +PSNW ELP D++S ILL+L  +EIL +A+ VC SWR++ KDPL+WR ID      
Sbjct: 19  KGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRR 78

Query: 69  ---IYA--------------GFELFSLDEVQLGESAFVLRYYIS---------------- 128
              IYA              G   F++D+ +  ++  +L Y                   
Sbjct: 79  LYCIYAMEACCRHVVDLSQGGLLEFNIDQWRF-QTTSLLNYMAERSSNLRRLRVKGGQIT 138

Query: 129 -------------------VVCDISEALHFHTQYQIRRGM-------------GCDVEAI 188
                              + C I E  HF T  Q    +               D +A+
Sbjct: 139 SVGIFEAIVKLPLLEELELLYCSIEEE-HFKTIGQACPNLKTLKLVGFWSHLNESDNDAL 198

Query: 189 AIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRCFKLVLLAEQLRQKCAGRI 192
           AIA +MP L HLQ++ N LT IGL AILD C  LE LDLR+CF + L  + L ++C  RI
Sbjct: 199 AIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGD-LERQCLERI 258

BLAST of CaUC01G024660 vs. TAIR 10
Match: AT4G05475.1 (RNI-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-24
Identity = 83/277 (29.96%), Postives = 125/277 (45.13%), Query Frame = 0

Query: 3   STSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWR--- 62
           ST   K+ + +  NW++LP ++ + ILL+L   +IL +A+ +C +WR+ICKDP MWR   
Sbjct: 26  STMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKIN 85

Query: 63  -----------------VIDIYAG------FELFSLDEV------------QLGESAF-- 122
                            ++D+  G       E F  D +             LG S +  
Sbjct: 86  LRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEP 145

Query: 123 ------------------VLRYYISVVCDI-------------------SEALHFHTQYQ 182
                             ++ ++ S+  D+                   SE  H  +Q  
Sbjct: 146 MTNKGVMNGIEKLPLLETLVIFHSSIKLDLKAIGHACPQLKTLKLNSLGSELAHDISQVG 205

Query: 183 IRRGMGCDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLES-LDLRRCFKLVL 202
               + CD +A+AIA+SMP LRHLQ++GN LT  GL AILD C  LE  LD+R+CF + L
Sbjct: 206 YIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINL 265

BLAST of CaUC01G024660 vs. TAIR 10
Match: AT4G05470.1 (RNI-like superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-21
Identity = 78/271 (28.78%), Postives = 115/271 (42.44%), Query Frame = 0

Query: 3   STSINKQAEAQPSNWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWR--- 62
           ST++      +  NW++LP ++ + ILL+L   +IL +AQ VC  WR+ICKDP MWR   
Sbjct: 32  STTLESLLMKERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKIN 91

Query: 63  -----------------VIDIYAGFEL-FSLDEVQLGESAFVLRY--------------- 122
                            ++D+  G  L  ++DE  L +S  +L Y               
Sbjct: 92  TRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDS--LLSYITDRNLRSLGLGMCF 151

Query: 123 ------------------------YISVVCDISEALHFHTQYQ----------------- 182
                                   +  +  D+    H   Q +                 
Sbjct: 152 PRVTKLGVVNAIAKIPLLETLEVTHSCIKLDLKAIGHACPQLKTLKLNSLGRLWPASDKY 211

Query: 183 ---IRRGMG---CDVEAIAIAKSMPNLRHLQMLGNDLTEIGLQAILDSCLDLESLDLRRC 191
              +   MG   CD +A+AIA+SMP L HLQ++ N LT  GL AILD C  LE LD+R+C
Sbjct: 212 DSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKC 271

BLAST of CaUC01G024660 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 5.8e-20
Identity = 70/224 (31.25%), Postives = 99/224 (44.20%), Query Frame = 0

Query: 16  NWLELPADVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDI------YAGFEL 75
           NW ELP ++ S ILL+LGAIEIL +AQ VC SWR++C+DP MWR IDI          EL
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 76  FSLDE--------------VQLGESAFVLRYYISVVCDIS-------------------- 135
           F + E              +++     V   +++ + D S                    
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query: 136 ---------EALHFHTQYQIRR------GMG-----------------CDVEAIAIAKSM 168
                    E L    +  IR       G                   CD  A+AIA++M
Sbjct: 140 EAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKCCDKVALAIAETM 199

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6581459.13.4e-3839.78F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022978592.13.4e-3839.78F-box protein SKIP19-like [Cucurbita maxima][more]
KAG7034751.13.4e-3839.78Protein BREAST CANCER SUSCEPTIBILITY 1-like protein [Cucurbita argyrosperma subs... [more]
XP_023543623.13.4e-3839.78F-box protein SKIP19-like [Cucurbita pepo subsp. pepo][more]
XP_038883784.14.4e-3839.58F-box protein SKIP19-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9M0U94.0e-2630.50F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1[more]
Q9M0U66.9e-2633.46Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE... [more]
Q9S9V99.0e-2634.38Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE... [more]
Q9M0U71.9e-2329.96Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE... [more]
Q9S9V88.2e-1931.25Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4... [more]
Match NameE-valueIdentityDescription
A0A6J1ILH51.6e-3839.78F-box protein SKIP19-like OS=Cucurbita maxima OX=3661 GN=LOC111478528 PE=4 SV=1[more]
A0A6J1EGI82.8e-3839.78F-box protein SKIP19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114331... [more]
A0A6J1ECV62.8e-3839.78F-box protein SKIP19-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114331... [more]
A0A6J1CXS54.1e-3743.18F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV... [more]
A0A5D3CNY71.0e-3546.32F-box protein SKIP19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
Match NameE-valueIdentityDescription
AT4G05460.12.9e-2730.50RNI-like superfamily protein [more]
AT4G05490.14.9e-2733.46RNI-like superfamily protein [more]
AT4G05475.11.3e-2429.96RNI-like superfamily protein [more]
AT4G05470.12.4e-2128.78RNI-like superfamily protein [more]
AT4G05497.15.8e-2031.25RNI-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 17..62
e-value: 1.1E-6
score: 28.4
IPR001810F-box domainPROSITEPS50181FBOXcoord: 14..61
score: 10.398279
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 105..206
e-value: 1.8E-8
score: 35.1
NoneNo IPR availableGENE3D1.20.1280.50coord: 11..62
e-value: 4.0E-10
score: 41.4
NoneNo IPR availablePANTHERPTHR38926:SF20F-BOX PROTEIN SKIP19-RELATEDcoord: 97..211
coord: 11..67
NoneNo IPR availablePANTHERPTHR38926F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSEDcoord: 97..211
coord: 11..67
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 117..162
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 11..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G024660.1CaUC01G024660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding