CaUC01G024590 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G024590
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 36569507 .. 36569839 (-)
RNA-Seq ExpressionCaUC01G024590
SyntenyCaUC01G024590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACTGCTGTGGAACCCCAAAATCATCGGGGTTCGTCGTCTCTTTTTGGGATCTTAGTTGAATCTAATCCCGAAGAAACCCTATTTAGGAAATGCTGATCGAGAAAACAAAAAAAATGAAACCAATCGACACGGCTGGGCCACACCAAGAAATCGCCGAAGATCAAGTTAATGCGGGAACAGTCTGGCTGAAGAAATGCGACCAGAATTTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAATCGGGAAGGACCGAGAACGAAGCTGTCATGTTAGATTGTGAAGTAACCCGTGAAATGAAAATAAGAACATTTTGA

mRNA sequence

ATGAAAAACTGCTGTGGAACCCCAAAATCATCGGGGTTCGTCGTCTCTTTTTGGGATCTTAAAATCGCCGAAGATCAAGTTAATGCGGGAACAGTCTGGCTGAAGAAATGCGACCAGAATTTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAATCGGGAAGGACCGAGAACGAAGCTGTCATGTTAGATTGTGAAGTAACCCGTGAAATGAAAATAAGAACATTTTGA

Coding sequence (CDS)

ATGAAAAACTGCTGTGGAACCCCAAAATCATCGGGGTTCGTCGTCTCTTTTTGGGATCTTAAAATCGCCGAAGATCAAGTTAATGCGGGAACAGTCTGGCTGAAGAAATGCGACCAGAATTTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAATCGGGAAGGACCGAGAACGAAGCTGTCATGTTAGATTGTGAAGTAACCCGTGAAATGAAAATAAGAACATTTTGA

Protein sequence

MKNCCGTPKSSGFVVSFWDLKIAEDQVNAGTVWLKKCDQNFRLNTQMEGPININESGRTENEAVMLDCEVTREMKIRTF
Homology
BLAST of CaUC01G024590 vs. NCBI nr
Match: KAA0052515.1 (hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK13310.1 hypothetical protein E5676_scaffold255G009330 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 21 KIAEDQVNAGTVWLKKCDQNFRLNTQMEGPININESGRTENEAVMLD 68
          +I EDQVNAGTVWL+KCD  FRLNTQMEGPININE  RTENEA+MLD
Sbjct: 12 EIDEDQVNAGTVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

BLAST of CaUC01G024590 vs. NCBI nr
Match: KGN49433.1 (hypothetical protein Csa_004453 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 9.4e-12
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 22 IAEDQVNAG-TVWLKKCDQNFRLNTQMEGPININESGRTENEAVMLD 68
          I EDQVNAG TVW++KCD  FRLNTQMEGPININE+ RTENEA+MLD
Sbjct: 13 ITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

BLAST of CaUC01G024590 vs. ExPASy TrEMBL
Match: A0A5D3CPG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009330 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 21 KIAEDQVNAGTVWLKKCDQNFRLNTQMEGPININESGRTENEAVMLD 68
          +I EDQVNAGTVWL+KCD  FRLNTQMEGPININE  RTENEA+MLD
Sbjct: 12 EIDEDQVNAGTVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

BLAST of CaUC01G024590 vs. ExPASy TrEMBL
Match: A0A0A0KIR4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.6e-12
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 22 IAEDQVNAG-TVWLKKCDQNFRLNTQMEGPININESGRTENEAVMLD 68
          I EDQVNAG TVW++KCD  FRLNTQMEGPININE+ RTENEA+MLD
Sbjct: 13 ITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052515.13.8e-1382.98hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK133... [more]
KGN49433.19.4e-1280.85hypothetical protein Csa_004453 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CPG01.9e-1382.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KIR44.6e-1280.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G024590.1CaUC01G024590.1mRNA