CaUC01G023510 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G023510
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 35663011 .. 35663535 (+)
RNA-Seq ExpressionCaUC01G023510
SyntenyCaUC01G023510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCACTTCCAATACAACTCCAAAGGTTCAGAGAGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGACGCCACAGAATTTGGTTTTGATTACGAGACAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCGGGTCAACTTTTCAATCAAACGGATTTGCATACGAAACTTCAGACAGTGTTGAATTCTCGTAGTAGAAGACATAATAAAAGTTGTTTCAAATTCAGAGTAAGCTGCTGCCTACCTCTCTTCTCTTTTGTTTCAAATTCAGATTTGATGCTTTGTTTTCAAATTGGGAACCTAAATTACCAAATAATGTCTTCATACATTCCTTTGGGTTTAGATTTAGAAGTGTGCAGTTTATATGTTGTAGGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTATGCTTCCATCTTTCCTTAATGGGGATGGATGA

mRNA sequence

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCACTTCCAATACAACTCCAAAGGTTCAGAGAGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGACGCCACAGAATTTGGTTTTGATTACGAGACAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCGGGTCAACTTTTCAATCAAACGGATTTGCATACGAAACTTCAGACAGTGTTGAATTCTCGTAGTAGAAGACATAATAAAAGTTGTTTCAAATTCAGAGTAAGCTGCTGCCTACCTCTCTTCTCTTTTGTTTCAAATTCAGATTTGATGCTTTGTTTTCAAATTGGGAACCTAAATTACCAAATAATGTCTTCATACATTCCTTTGGGTTTAGATTTAGAAGTGTGCAGTTTATATGTTGTAGGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTATGCTTCCATCTTTCCTTAATGGGGATGGATGA

Coding sequence (CDS)

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCACTTCCAATACAACTCCAAAGGTTCAGAGAGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGACGCCACAGAATTTGGTTTTGATTACGAGACAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCGGGTCAACTTTTCAATCAAACGGATTTGCATACGAAACTTCAGACAGTGTTGAATTCTCGTAGTAGAAGACATAATAAAAGTTGTTTCAAATTCAGAGTAAGCTGCTGCCTACCTCTCTTCTCTTTTGTTTCAAATTCAGATTTGATGCTTTGTTTTCAAATTGGGAACCTAAATTACCAAATAATGTCTTCATACATTCCTTTGGGTTTAGATTTAGAAGTGTGCAGTTTATATGTTGTAGGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTATGCTTCCATCTTTCCTTAATGGGGATGGATGA

Protein sequence

MSIPELPFSPSNFIATSNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRVSCCLPLFSFVSNSDLMLCFQIGNLNYQIMSSYIPLGLDLEVCSLYVVGVLVLCEENLKAVIFSAMLPSFLNGDG
Homology
BLAST of CaUC01G023510 vs. NCBI nr
Match: KAG7034657.1 (hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.0 bits (484), Expect = 8.4e-45
Identity = 108/172 (62.79%), Postives = 121/172 (70.35%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIATSNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQR 60
           MSIPELPFSPSNFIATS+ TP VQ+VSK+TSDRLLQKFFDATEFGFDYE SGLWSPPLQR
Sbjct: 1   MSIPELPFSPSNFIATSH-TPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQR 60

Query: 61  SVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRVSCCLPLFSFVSNSDLMLCFQ 120
           SVYLS+SG++FNQ DLH KL++VL+SR +R  K  FKFR S                   
Sbjct: 61  SVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRGS------------------- 120

Query: 121 IGNLNYQIMSSYIPLGLDLEVCSLYVVGVLVLCEENLKAVIFSAMLPSFLNG 173
                           L+L+VCSLYVVGVLVLCE NLKA IF+AMLP F  G
Sbjct: 121 ----------------LELDVCSLYVVGVLVLCEANLKAAIFTAMLPFFHYG 136

BLAST of CaUC01G023510 vs. NCBI nr
Match: XP_038892892.1 (uncharacterized protein LOC120081796 [Benincasa hispida])

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-43
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIATS-NTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQ 60
           MSIP+LPFSPSNFIATS N TPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQ
Sbjct: 1   MSIPQLPFSPSNFIATSNNNTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQ 60

Query: 61  RSVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRVSCC 104
           RSVYLSSSGQ+FNQTDLHTKLQTVLNSR RRH KSCFKFRV  C
Sbjct: 61  RSVYLSSSGQVFNQTDLHTKLQTVLNSRRRRH-KSCFKFRVFWC 103

BLAST of CaUC01G023510 vs. NCBI nr
Match: KAE8647723.1 (hypothetical protein Csa_003961 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-37
Identity = 86/103 (83.50%), Postives = 89/103 (86.41%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIATSNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQR 60
           MSIPELPFSPSN        PKVQRVSKSTSDRLLQKFFDATEFGFDYE SGLWSPPLQR
Sbjct: 1   MSIPELPFSPSN--------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQR 60

Query: 61  SVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRVSCC 104
           +VYL+SSGQ+ NQTDLHTKLQTVLNSRSR H KSCFKFR  CC
Sbjct: 61  TVYLTSSGQVLNQTDLHTKLQTVLNSRSRTH-KSCFKFRFKCC 94

BLAST of CaUC01G023510 vs. NCBI nr
Match: KAG6581370.1 (hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIATSNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQR 60
           MSIPELPFSPSNFIATS+ TP VQ+VSK+TSDRLLQKFFDATEFGFDYE SGLWSPPLQR
Sbjct: 1   MSIPELPFSPSNFIATSH-TPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPLQR 60

Query: 61  SVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRVSCC 104
           SVYLS+SG++FNQ DLH KL++VL+SR +R  K  FKFRV  C
Sbjct: 61  SVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWC 102

BLAST of CaUC01G023510 vs. NCBI nr
Match: KAG6594533.1 (hypothetical protein SDJN03_11086, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-24
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 0

Query: 14  IATSNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSSGQLFNQ 73
           I+T+ T   VQRV KSTSDRLLQKF DATEF FDY+TSGLWSPPLQR+VYLSSSG++FN 
Sbjct: 3   ISTTATPKLVQRVPKSTSDRLLQKFCDATEFEFDYDTSGLWSPPLQRTVYLSSSGRVFNP 62

Query: 74  TDLHTKLQTVLNSRSRRHNKSCFKFRVSCCLPLFSFVSNSDLMLCFQIGNLNY 127
           TDL  KL+ VL+S   R   SCFKFRV   + + S ++   L +  Q+  L Y
Sbjct: 63  TDLQRKLENVLSSDRSRRETSCFKFRVILSMGVASLMALVVLPMVKQLCRLTY 115

BLAST of CaUC01G023510 vs. ExPASy TrEMBL
Match: A0A0A0KLQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.9e-37
Identity = 86/103 (83.50%), Postives = 89/103 (86.41%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIATSNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQR 60
           MSIPELPFSPSN        PKVQRVSKSTSDRLLQKFFDATEFGFDYE SGLWSPPLQR
Sbjct: 1   MSIPELPFSPSN--------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQR 60

Query: 61  SVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRVSCC 104
           +VYL+SSGQ+ NQTDLHTKLQTVLNSRSR H KSCFKFRV  C
Sbjct: 61  TVYLTSSGQVLNQTDLHTKLQTVLNSRSRTH-KSCFKFRVFWC 94

BLAST of CaUC01G023510 vs. ExPASy TrEMBL
Match: A0A2I4H1I2 (uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIAT--SNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPL 60
           MSIPE PFS S+   +    ++ +V+ VSK  SDRL+QKF+D +EFGFDYE SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSSSGQLFNQTDLHTKLQTVL--NSRSRRHNKSCFKFRVSC 103
           QR+V++SSSG++F + D+ +KL++ L  + R R+H   CF   V C
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCC 106

BLAST of CaUC01G023510 vs. ExPASy TrEMBL
Match: A0A2I4H1F6 (uncharacterized protein LOC109012687 isoform X3 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIAT--SNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPL 60
           MSIPE PFS S+   +    ++ +V+ VSK  SDRL+QKF+D +EFGFDYE SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSSSGQLFNQTDLHTKLQTVL--NSRSRRHNKSCFKFRVSC 103
           QR+V++SSSG++F + D+ +KL++ L  + R R+H   CF   V C
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCC 106

BLAST of CaUC01G023510 vs. ExPASy TrEMBL
Match: A0A2I4H1H1 (uncharacterized protein LOC109012687 isoform X2 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIAT--SNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPL 60
           MSIPE PFS S+   +    ++ +V+ VSK  SDRL+QKF+D +EFGFDYE SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSSSGQLFNQTDLHTKLQTVL--NSRSRRHNKSCFKFRVSC 103
           QR+V++SSSG++F + D+ +KL++ L  + R R+H   CF   V C
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCC 106

BLAST of CaUC01G023510 vs. ExPASy TrEMBL
Match: A0A6P6FRY9 (uncharacterized protein LOC107412288 OS=Ziziphus jujuba OX=326968 GN=LOC107412288 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MSIPELPFSPSNFIATSNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQR 60
           MS+ ++  S S+    SN+  KVQ VSKSTSD+LL+KFFDA EF FDYE SGLWSPP++R
Sbjct: 1   MSLSQVSSSASSSSQNSNSPLKVQLVSKSTSDQLLEKFFDAAEFDFDYEQSGLWSPPVRR 60

Query: 61  SVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRVSCC 104
           SV++SS G++F + ++  +L+T++++R        F FR SCC
Sbjct: 61  SVFMSSPGKIFTEQEMLERLKTMMDARDSGRRYRMF-FRASCC 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7034657.18.4e-4562.79hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038892892.14.6e-4392.31uncharacterized protein LOC120081796 [Benincasa hispida][more]
KAE8647723.11.7e-3783.50hypothetical protein Csa_003961 [Cucumis sativus][more]
KAG6581370.11.6e-3578.64hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594533.11.6e-2459.29hypothetical protein SDJN03_11086, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLQ86.9e-3783.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1[more]
A0A2I4H1I21.7e-1950.94uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC... [more]
A0A2I4H1F61.7e-1950.94uncharacterized protein LOC109012687 isoform X3 OS=Juglans regia OX=51240 GN=LOC... [more]
A0A2I4H1H11.7e-1950.94uncharacterized protein LOC109012687 isoform X2 OS=Juglans regia OX=51240 GN=LOC... [more]
A0A6P6FRY91.4e-1850.49uncharacterized protein LOC107412288 OS=Ziziphus jujuba OX=326968 GN=LOC10741228... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34287OS06G0551500 PROTEIN-RELATEDcoord: 17..98
NoneNo IPR availablePANTHERPTHR34287:SF2OS06G0551500 PROTEINcoord: 17..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G023510.1CaUC01G023510.1mRNA