CaUC01G023380 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G023380
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Ciama_Chr01: 35523939 .. 35524538 (+)
RNA-Seq Expression	CaUC01G023380
Synteny	CaUC01G023380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGCGACAGAGCAATTTGTGAAGGGTCATCATCTGGGTTGGCCATCACCGCCGATCAACAACAACAACAGCCGGCGCAGGCTGGGGCGGGGACGAGCGTTCCGTTGAGCCGTTACGAATCGCAAAAGCGGCGAGATTGGAATACTTTCGGGCAATATCTAAAAAACCAAACACCGCCAGTATCGCTATCCCACTGTAACTGTAACCATGTACTTGAATTTCTTCGATACCTTGATCAGTTCGGGAAAACAAGGGTTCATTCACATGGGTGTGTTTTTTTCGGGCAACCTGACCCCCCTGCCCCTTGCCCCTGCCCTTTGAAACAGGCTTGGGGCAGCCTCGACGCGCTCATCGGCCGTCTACGTGCCGCCTACGAGGAGCACGGTGGGTCGCCGGAAGGAAACCCTTTTGGAAATGGAGCCATTAGAACGTATCTAAGAGAGGTGAAGGAGAGCCAGGCAAAGGCCAGAGGAATTCCGTACAAGAAGAAGAAGAAGAAGAGAAATAATCAGATGATTATGAATAAGCAGCTGCCGCTCCCCAACGACAATACTAATAGTAATGATGCCAACGCTCCTTTGACTCACATCGCTTGA

mRNA sequence

ATGTTAGGCGACAGAGCAATTTGTGAAGGGTCATCATCTGGGTTGGCCATCACCGCCGATCAACAACAACAACAGCCGGCGCAGGCTGGGGCGGGGACGAGCGTTCCGTTGAGCCGTTACGAATCGCAAAAGCGGCGAGATTGGAATACTTTCGGGCAATATCTAAAAAACCAAACACCGCCAGTATCGCTATCCCACTGTAACTGTAACCATGTACTTGAATTTCTTCGATACCTTGATCAGTTCGGGAAAACAAGGGTTCATTCACATGGGTGTGTTTTTTTCGGGCAACCTGACCCCCCTGCCCCTTGCCCCTGCCCTTTGAAACAGGCTTGGGGCAGCCTCGACGCGCTCATCGGCCGTCTACGTGCCGCCTACGAGGAGCACGGTGGGTCGCCGGAAGGAAACCCTTTTGGAAATGGAGCCATTAGAACGTATCTAAGAGAGGTGAAGGAGAGCCAGGCAAAGGCCAGAGGAATTCCGTACAAGAAGAAGAAGAAGAAGAGAAATAATCAGATGATTATGAATAAGCAGCTGCCGCTCCCCAACGACAATACTAATAGTAATGATGCCAACGCTCCTTTGACTCACATCGCTTGA

Coding sequence (CDS)

ATGTTAGGCGACAGAGCAATTTGTGAAGGGTCATCATCTGGGTTGGCCATCACCGCCGATCAACAACAACAACAGCCGGCGCAGGCTGGGGCGGGGACGAGCGTTCCGTTGAGCCGTTACGAATCGCAAAAGCGGCGAGATTGGAATACTTTCGGGCAATATCTAAAAAACCAAACACCGCCAGTATCGCTATCCCACTGTAACTGTAACCATGTACTTGAATTTCTTCGATACCTTGATCAGTTCGGGAAAACAAGGGTTCATTCACATGGGTGTGTTTTTTTCGGGCAACCTGACCCCCCTGCCCCTTGCCCCTGCCCTTTGAAACAGGCTTGGGGCAGCCTCGACGCGCTCATCGGCCGTCTACGTGCCGCCTACGAGGAGCACGGTGGGTCGCCGGAAGGAAACCCTTTTGGAAATGGAGCCATTAGAACGTATCTAAGAGAGGTGAAGGAGAGCCAGGCAAAGGCCAGAGGAATTCCGTACAAGAAGAAGAAGAAGAAGAGAAATAATCAGATGATTATGAATAAGCAGCTGCCGCTCCCCAACGACAATACTAATAGTAATGATGCCAACGCTCCTTTGACTCACATCGCTTGA

Protein sequence

MLGDRAICEGSSSGLAITADQQQQQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIMNKQLPLPNDNTNSNDANAPLTHIA

Homology

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BLAST of CaUC01G023380 vs. NCBI nr
Match: KGN49306.1 (hypothetical protein Csa_004072 [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 1.7e-97
Identity = 186/210 (88.57%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQQQ----PAQAGAGTSVPLSRYESQKRRDWNTFGQYLK 60
           MLG+RAICEGSSSGLAITADQQQQQ     AQAG G  VPLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGERAICEGSSSGLAITADQQQQQQQAGQAQAGTGAGVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIM- 180
           ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQM+M 
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMMMM 180

Query: 181 ---NKQ----LPLPNDNTNSNDANAPLTHI 199
              NKQ      LPNDN   ND NAPLTHI
Sbjct: 181 NNTNKQQQLLQQLPNDN---NDTNAPLTHI 207

[Close]

BLAST of CaUC01G023380 vs. NCBI nr
Match: XP_038881253.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 360.5 bits (924), Expect = 9.1e-96
Identity = 177/200 (88.50%), Postives = 184/200 (92.00%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQ----QQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLK 60
           MLG+R ICEGSSSGLAITADQQQ    Q   Q   G  VPLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGERPICEGSSSGLAITADQQQAAQPQTQTQTQVGAGVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPVSLS+CNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQP+PPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSNCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPEPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIMN 180
           ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQM+MN
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMMMN 180

Query: 181 KQLPLPNDNTNSNDANAPLT 197
           KQ  LPN+N+N+ND NAPLT
Sbjct: 181 KQ-QLPNNNSNNNDTNAPLT 199

[Close]

BLAST of CaUC01G023380 vs. NCBI nr
Match: KAA0052619.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK13209.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 360.1 bits (923), Expect = 1.2e-95
Identity = 180/205 (87.80%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQQQPAQAG---AGTSVPLSRYESQKRRDWNTFGQYLKN 60
           MLG+RAICEGSSSGLAITADQQQQQ   AG    G  VPLSRYESQKRRDWNTFGQYLKN
Sbjct: 1   MLGERAICEGSSSGLAITADQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFGQYLKN 60

Query: 61  QTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDA 120
           QTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDA
Sbjct: 61  QTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDA 120

Query: 121 LIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMI--- 180
           LIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ +   
Sbjct: 121 LIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQTMMMN 180

Query: 181 -MNKQLPLPNDNTNSNDANAPLTHI 199
            MNKQ  L     N+ND NAPLTHI
Sbjct: 181 NMNKQQQLQQLPNNNNDTNAPLTHI 205

[Close]

BLAST of CaUC01G023380 vs. NCBI nr
Match: XP_008465528.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 181/212 (85.38%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQQQ--------PAQAGAGTSVPLSRYESQKRRDWNTFG 60
           MLG+RAICEGSSSGLAITADQQ QQ          QA  G  VPLSRYESQKRRDWNTFG
Sbjct: 1   MLGERAICEGSSSGLAITADQQHQQQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFG 60

Query: 61  QYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW 120
           QYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW
Sbjct: 61  QYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW 120

Query: 121 GSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ 180
           GSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ
Sbjct: 121 GSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ 180

Query: 181 MI----MNKQ--LPLPNDNTNSNDANAPLTHI 199
            +    MNKQ    LPN   N+ND NAPLTHI
Sbjct: 181 TMMMNNMNKQQLQQLPN---NNNDTNAPLTHI 209

[Close]

BLAST of CaUC01G023380 vs. NCBI nr
Match: XP_023003302.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003303.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003304.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 303.9 bits (777), Expect = 1.0e-78
Identity = 159/201 (79.10%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQ--QQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD   CE SSS  A TADQQQ  Q P Q    + VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTPSCEASSSRSA-TADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIMNKQ 180
           IGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ+I    
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKG-- 180

Query: 181 LPLPNDNTNSNDANAPLTHIA 200
               NDN   ND NA LT +A
Sbjct: 181 ----NDN---NDTNAALTQMA 191

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BLAST of CaUC01G023380 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-64
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 29  AGAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVH 88
           +G+   V  SRYESQKRRDWNTFGQYLKNQ PPV +SHC+CNHVL+FLRYLDQFGKT+VH
Sbjct: 15  SGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVH 74

Query: 89  SHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLR 148
             GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR YLR
Sbjct: 75  VPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLR 134

Query: 149 EVKESQAKARGIPYKKKKKKR 170
           EV+E QAKARGIPYKKKKKK+
Sbjct: 135 EVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of CaUC01G023380 vs. ExPASy Swiss-Prot
Match: B8AIK3 (Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.4e-59
Identity = 104/146 (71.23%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 26  PAQA--GAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFG 85
           PA++  G GT+ P SRYESQKRRDW TFGQYL+N  PP+ LS C+  HVLEFLRYLDQFG
Sbjct: 9   PAESPGGGGTARP-SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFG 68

Query: 86  KTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAI 145
           KT+VH+HGC FFG P PPAPCPCPL+QAWGSLDAL+GRLRAA+EEHGG PE NPFG  A+
Sbjct: 69  KTKVHAHGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAV 128

Query: 146 RTYLREVKESQAKARGIPYKKKKKKR 170
           R YLR+++++Q+KARGI Y+KK++KR
Sbjct: 129 RLYLRDIRDTQSKARGIAYEKKRRKR 153

[Close]

BLAST of CaUC01G023380 vs. ExPASy Swiss-Prot
Match: Q0E3M2 (Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.4e-59
Identity = 104/146 (71.23%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 26  PAQA--GAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFG 85
           PA++  G GT+ P SRYESQKRRDW TFGQYL+N  PP+ LS C+  HVLEFLRYLDQFG
Sbjct: 9   PAESPGGGGTARP-SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFG 68

Query: 86  KTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAI 145
           KT+VH+HGC FFG P PPAPCPCPL+QAWGSLDAL+GRLRAA+EEHGG PE NPFG  A+
Sbjct: 69  KTKVHAHGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAV 128

Query: 146 RTYLREVKESQAKARGIPYKKKKKKR 170
           R YLR+++++Q+KARGI Y+KK++KR
Sbjct: 129 RLYLRDIRDTQSKARGIAYEKKRRKR 153

[Close]

BLAST of CaUC01G023380 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.4e-59
Identity = 108/152 (71.05%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 18  TADQQQQQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLR 77
           T        +  G+GT+  LSRYE+QKRRDWNTFGQYL+N  PP+SLS C+  HVLEFLR
Sbjct: 28  TTTSSSSSSSSGGSGTN-QLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLR 87

Query: 78  YLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNP 137
           YLDQFGKT+VH+H C FFG P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NP
Sbjct: 88  YLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNP 147

Query: 138 FGNGAIRTYLREVKESQAKARGIPYKKKKKKR 170
           FG  A+R YLREV++SQAKARGI Y+KKK+KR
Sbjct: 148 FGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of CaUC01G023380 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.2e-59
Identity = 103/140 (73.57%), Postives = 119/140 (85.00%), Query Frame = 0


Query: 30  GAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHS 89
           G G +   SRYESQKRRDW+TFGQYL+N  PP+ LS C+  HVLEFLRYLDQFGKT+VH+
Sbjct: 13  GGGEAPRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHA 72

Query: 90  HGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLRE 149
            GC FFG P PPAPCPCPL+QAWGSLDAL+GRLRAA+EEHGG PE NPFG  A+R YLRE
Sbjct: 73  AGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLRE 132

Query: 150 VKESQAKARGIPYKKKKKKR 170
           V++SQAKARGI Y+KK++KR
Sbjct: 133 VRDSQAKARGIAYEKKRRKR 152

[Close]

BLAST of CaUC01G023380 vs. ExPASy TrEMBL
Match: A0A0A0KNK5 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.0e-98
Identity = 186/210 (88.57%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQQQ----PAQAGAGTSVPLSRYESQKRRDWNTFGQYLK 60
           MLG+RAICEGSSSGLAITADQQQQQ     AQAG G  VPLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGERAICEGSSSGLAITADQQQQQQQAGQAQAGTGAGVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIM- 180
           ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQM+M 
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMMMM 180

Query: 181 ---NKQ----LPLPNDNTNSNDANAPLTHI 199
              NKQ      LPNDN   ND NAPLTHI
Sbjct: 181 NNTNKQQQLLQQLPNDN---NDTNAPLTHI 207

[Close]

BLAST of CaUC01G023380 vs. ExPASy TrEMBL
Match: A0A5A7UGI5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008220 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.8e-96
Identity = 180/205 (87.80%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQQQPAQAG---AGTSVPLSRYESQKRRDWNTFGQYLKN 60
           MLG+RAICEGSSSGLAITADQQQQQ   AG    G  VPLSRYESQKRRDWNTFGQYLKN
Sbjct: 1   MLGERAICEGSSSGLAITADQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFGQYLKN 60

Query: 61  QTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDA 120
           QTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDA
Sbjct: 61  QTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDA 120

Query: 121 LIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMI--- 180
           LIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ +   
Sbjct: 121 LIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQTMMMN 180

Query: 181 -MNKQLPLPNDNTNSNDANAPLTHI 199
            MNKQ  L     N+ND NAPLTHI
Sbjct: 181 NMNKQQQLQQLPNNNNDTNAPLTHI 205

[Close]

BLAST of CaUC01G023380 vs. ExPASy TrEMBL
Match: A0A1S3CP28 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503153 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.4e-94
Identity = 181/212 (85.38%), Postives = 184/212 (86.79%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQQQ--------PAQAGAGTSVPLSRYESQKRRDWNTFG 60
           MLG+RAICEGSSSGLAITADQQ QQ          QA  G  VPLSRYESQKRRDWNTFG
Sbjct: 1   MLGERAICEGSSSGLAITADQQHQQQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFG 60

Query: 61  QYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW 120
           QYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW
Sbjct: 61  QYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAW 120

Query: 121 GSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ 180
           GSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ
Sbjct: 121 GSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQ 180

Query: 181 MI----MNKQ--LPLPNDNTNSNDANAPLTHI 199
            +    MNKQ    LPN   N+ND NAPLTHI
Sbjct: 181 TMMMNNMNKQQLQQLPN---NNNDTNAPLTHI 209

[Close]

BLAST of CaUC01G023380 vs. ExPASy TrEMBL
Match: A0A6J1KW42 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111496952 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.9e-79
Identity = 159/201 (79.10%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MLGDRAICEGSSSGLAITADQQQ--QQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD   CE SSS  A TADQQQ  Q P Q    + VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTPSCEASSSRSA-TADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIMNKQ 180
           IGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ+I    
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKG-- 180

Query: 181 LPLPNDNTNSNDANAPLTHIA 200
               NDN   ND NA LT +A
Sbjct: 181 ----NDN---NDTNAALTQMA 191

[Close]

BLAST of CaUC01G023380 vs. ExPASy TrEMBL
Match: A0A6J1EEZ4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433720 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.4e-78
Identity = 158/201 (78.61%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MLGDR-AICEGSSSGLAITADQQQ-QQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDR   CEGSSS  A    QQQ Q P Q    ++VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIMNKQ 180
           IGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ+I    
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKG-- 180

Query: 181 LPLPNDNTNSNDANAPLTHIA 200
               NDN   ND NA LT +A
Sbjct: 181 ----NDN---NDTNAALTQMA 192

[Close]

BLAST of CaUC01G023380 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 29  AGAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVH 88
           +G+   V  SRYESQKRRDWNTFGQYLKNQ PPV +SHC+CNHVL+FLRYLDQFGKT+VH
Sbjct: 15  SGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVH 74

Query: 89  SHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLR 148
             GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR YLR
Sbjct: 75  VPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLR 134

Query: 149 EVKESQAKARGIPYKKKKKKR 170
           EV+E QAKARGIPYKKKKKK+
Sbjct: 135 EVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of CaUC01G023380 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 29  AGAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVH 88
           +G+   V  SRYESQKRRDWNTFGQYLKNQ PPV +SHC+CNHVL+FLRYLDQFGKT+VH
Sbjct: 15  SGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVH 74

Query: 89  SHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLR 148
             GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR YLR
Sbjct: 75  VPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLR 134

Query: 149 EVKESQAKARGIPYKKKKKKR 170
           EV+E QAKARGIPYKKKKKK+
Sbjct: 135 EVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of CaUC01G023380 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.8 bits (582), Expect = 3.9e-60
Identity = 108/152 (71.05%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 18  TADQQQQQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLR 77
           T        +  G+GT+  LSRYE+QKRRDWNTFGQYL+N  PP+SLS C+  HVLEFLR
Sbjct: 28  TTTSSSSSSSSGGSGTN-QLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLR 87

Query: 78  YLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNP 137
           YLDQFGKT+VH+H C FFG P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NP
Sbjct: 88  YLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNP 147

Query: 138 FGNGAIRTYLREVKESQAKARGIPYKKKKKKR 170
           FG  A+R YLREV++SQAKARGI Y+KKK+KR
Sbjct: 148 FGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of CaUC01G023380 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-59
Identity = 111/187 (59.36%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 7   ICEGSSSGLAITADQQQQQPAQAGAGTSVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSH 66
           I   +SS +      +  QP  + +  S   SRYE+QKRRDWNTFGQYL+N  PP+SLS 
Sbjct: 22  IISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

Query: 67  CNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAY 126
           C+  HVLEFLRYLDQFGKT+VH++ C F+G P+PPAPCPCPL+QAWGSLDALIGRLRAA+
Sbjct: 82  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 141

Query: 127 EEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMIMNKQLPLPNDNT 186
           EE+GG PE NPFG  A+R YLREV++ Q+KARG+ Y+KKK+KR          PLP+ +T
Sbjct: 142 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKR----------PLPSSST 198

Query: 187 NSNDANA 194
           +S+ A A
Sbjct: 202 SSSSAVA 198

[Close]

BLAST of CaUC01G023380 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-59
Identity = 111/162 (68.52%), Postives = 128/162 (79.01%), Query Frame = 0


Query: 36  PLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFF 95
           PLSRYESQKRRDWNTF QYLK+Q PP+ +S  +  HVL FLRYLDQFGKT+VH   CVFF
Sbjct: 34  PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFF 93

Query: 96  GQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEH-GGSPEGNPFGNGAIRTYLREVKESQ 155
           GQPDPP PC CPLKQAWGSLDALIGRLRAAYEEH GGSP+ NPF NG+IR +LREV+ESQ
Sbjct: 94  GQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQ 153

Query: 156 AKARGIPYKKKKKKRNNQMIMNKQLPLPNDNTNSNDANAPLT 197
           AKARGIPY+KKK+++      N+ + +  D  NS+  N   T
Sbjct: 154 AKARGIPYRKKKRRKTK----NEVVVVKKDVANSSTPNQSFT 191

The following BLAST results are available for this feature:

BLAST of CaUC01G023380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49306.1	1.7e-97	88.57	hypothetical protein Csa_004072 [Cucumis sativus]	[more]
XP_038881253.1	9.1e-96	88.50	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]
KAA0052619.1	1.2e-95	87.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_008465528.1	1.1e-93	85.38	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]	[more]
XP_023003302.1	1.0e-78	79.10	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_02300330...	[more]

BLAST of CaUC01G023380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.5e-64	79.43	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
B8AIK3	5.4e-59	71.23	Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1	[more]
Q0E3M2	5.4e-59	71.23	Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1	[more]
Q9LW68	5.4e-59	71.05	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2YG32	9.2e-59	73.57	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]

BLAST of CaUC01G023380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNK5	8.0e-98	88.57	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 S...	[more]
A0A5A7UGI5	5.8e-96	87.80	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CP28	5.4e-94	85.38	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KW42	4.9e-79	79.10	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EEZ4	1.4e-78	78.61	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of CaUC01G023380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.8e-65	79.43	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.8e-65	79.43	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.9e-60	71.05	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.1e-59	59.36	Protein of unknown function (DUF640)	[more]
AT4G18610.1	1.1e-59	68.52	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 36..152 e-value: 2.3E-62 score: 208.7
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 39..166 score: 78.155563
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..199
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 5..176
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 5..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G023380.1	CaUC01G023380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus