CaUC01G021650 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G021650
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Location	Ciama_Chr01: 34148636 .. 34148995 (+)
RNA-Seq Expression	CaUC01G021650
Synteny	CaUC01G021650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCGGCGATGGAATACGGCAACCGGAGGACTCCGCCGTGGAAGAACCACCGTCAGAGAAAGCCTGGAGGTAGTTCTTATTATTGTTCTAGTACGCACAAGGATCCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTTAACATTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAACAACGTTCATGGAGGCCTTCTCTGCAAAGCATTCCTGAGATAATTTGA

mRNA sequence

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCGGCGATGGAATACGGCAACCGGAGGACTCCGCCGTGGAAGAACCACCGTCAGAGAAAGCCTGGAGGTAGTTCTTATTATTGTTCTAGTACGCACAAGGATCCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTTAACATTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAACAACGTTCATGGAGGCCTTCTCTGCAAAGCATTCCTGAGATAATTTGA

Coding sequence (CDS)

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCGGCGATGGAATACGGCAACCGGAGGACTCCGCCGTGGAAGAACCACCGTCAGAGAAAGCCTGGAGGTAGTTCTTATTATTGTTCTAGTACGCACAAGGATCCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTTAACATTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAACAACGTTCATGGAGGCCTTCTCTGCAAAGCATTCCTGAGATAATTTGA

Protein sequence

MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKLRQQRSWRPSLQSIPEII

Homology

[Close]

BLAST of CaUC01G021650 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.2e-40
Identity = 92/120 (76.67%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCC+GQ STP     +RRTPP KNHRQR+    S  CS      KE NLREVKIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KELEELVGWLNMADSSFEHVMARLVN+I+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CaUC01G021650 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 93/126 (73.81%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCCRGQSSTP +  G+RR  P KN RQR+ G  S  CS+T K  KEGNLRE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGS--CSTTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNG-------ENNDQMVKLRQQRSWRPSLQ 120
           KEL+EL+GWLNMADSSFE VMARLVN+ISDQNG       EN  QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of CaUC01G021650 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 91/126 (72.22%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCCRGQSSTP +   NRR  P KN RQR+ G SS  CS+T K  KEGN+RE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASS--CSTTIKGSKEGNMRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVN+IS+QNG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of CaUC01G021650 vs. NCBI nr
Match: KAG7033944.1 (hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 91/126 (72.22%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCCRGQSSTP +   NRR  P KN RQR+ G SS  CS+T K  KEGN+RE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASS--CSTTIKGSKEGNMRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVN+IS+QNG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of CaUC01G021650 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 89/126 (70.63%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCCRGQSSTP +  G+RR  P KN  QR+ G +S  CS+T K  KEGNLRE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANS--CSTTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGENND-------QMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVN+IS+ NG++++       QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of CaUC01G021650 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 92/120 (76.67%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCC+GQ STP     +RRTPP KNHRQR+    S  CS      KE NLREVKIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KELEELVGWLNMADSSFEHVMARLVN+I+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CaUC01G021650 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 92/120 (76.67%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCC+GQ STP     +RRTPP KNHRQR+    S  CS      KE NLREVKIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 120
           KELEELVGWLNMADSSFEHVMARLVN+I+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CaUC01G021650 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-39
Identity = 93/126 (73.81%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNLREVKIRMTK 60
           MGNCCRGQSSTP +  G+RR  P KN RQR+ G  S  CS+T K  KEGNLRE+KIRMTK
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGS--CSTTIKGSKEGNLRELKIRMTK 60

Query: 61  KELEELVGWLNMADSSFEHVMARLVNIISDQNG-------ENNDQMVKLRQQRSWRPSLQ 120
           KEL+EL+GWLNMADSSFE VMARLVN+ISDQNG       EN  QMVKLRQQRSWRPSLQ
Sbjct: 61  KELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQ 120

[Close]

BLAST of CaUC01G021650 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35
Identity = 87/121 (71.90%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRK-PGGSSYYCSSTHKDPKEGNLREVKIRMT 60
           MGNCC+ QSSTP ME  +  TPP+KNH QR+   GSS          KE NLREVKIRMT
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSS----------KETNLREVKIRMT 60

Query: 61  KKELEELVGWLNMADSSFEHVMARLVNIISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEI 120
           KKEL+ELVGWLNMADSSFE VMARLVN+I+ QNG+ NNDQ+VKLRQQRSWRPSLQSIPE+
Sbjct: 61  KKELQELVGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEM 111

[Close]

BLAST of CaUC01G021650 vs. ExPASy TrEMBL
Match: A0A438EDR4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_068559 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-09
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 46  PKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKLRQQ 105
           P+  + REVKI++TKKELEEL+  ++M   + EHV+A+L+      NG +ND+    ++Q
Sbjct: 57  PRSPSGREVKIKITKKELEELLARVDMQGVTLEHVLAQLM-----INGTDNDRSADKQRQ 116

Query: 106 RSWRPSLQSIPEI 119
           RSWRP+LQSIPE+
Sbjct: 117 RSWRPALQSIPEV 124

[Close]

BLAST of CaUC01G021650 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05
Identity = 39/130 (30.00%), Postives = 59/130 (45.38%), Query Frame = 0


Query: 1   MGNCCRGQSST--PAMEYGNRRTPPWKNHRQRKPGGSSYYCSSTHKDPKEGNL------- 60
           MGNC R +S       ++    T   ++H         +Y S T +D K   +       
Sbjct: 1   MGNCLRHESEMHWAGEDWDEFITEDEEDH---------HYSSKTTRDGKPVIVTRDSKSS 60

Query: 61  ---REVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKLRQQRSW 119
               E+KIR+TKK+L +L+  +N+ D +F+        +       NN    +  QQR W
Sbjct: 61  VPSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPIL-------NNRGYEEANQQRLW 114

[Close]

BLAST of CaUC01G021650 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 39/132 (29.55%), Postives = 61/132 (46.21%), Query Frame = 0


Query: 1   MGNCCRGQSSTPAMEYGNRRTPPWKNHRQRKP--------------GGSSYYCSSTHKDP 60
           MGNC      T     G+      K  R+R+               G +S   S++    
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  KEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNIISDQNGENNDQMVKLRQQR 119
            E   RE+KIR+TKKELE+L+  + +   + E ++++L+    DQ G +   +    Q  
Sbjct: 61  SE--RREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ-- 120

The following BLAST results are available for this feature:

BLAST of CaUC01G021650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441100.1	4.2e-40	76.67	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]
XP_022977330.1	2.1e-39	73.81	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
KAG6603773.1	1.4e-38	72.22	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033944.1	1.4e-38	72.22	hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023544016.1	1.5e-37	70.63	uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC01G021650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC01G021650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNX5	2.1e-40	76.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	2.1e-40	76.67	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A6J1IM02	1.0e-39	73.81	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A0A0KHU7	1.2e-35	71.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A438EDR4	9.3e-09	49.32	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_068559 PE=4 SV=1	[more]

BLAST of CaUC01G021650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20340.1	2.8e-05	30.00	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]
AT4G21920.1	6.2e-05	29.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G021650.1	CaUC01G021650.1	mRNA