CaUC01G020710 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G020710
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA-directed RNA polymerases IV and V subunit 4-like
Location	Ciama_Chr01: 33514835 .. 33521447 (-)
RNA-Seq Expression	CaUC01G020710
Synteny	CaUC01G020710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGGAAATGTTCTGTTCTGCTCGCATTTCACCTGAATCCGAGCCCAGTTAAGCGAAATTCCAAGTATAAATTGTAGTTAGGTTTATGATTTTGATCTGTGTATTTTTGTATTTTTAACGTTTGGTTTTGGTTCTTATAATTTTTTATTTGTTTCTTCTTTAAACCCATCAGTTCAATTTCTAAATGTGATTGCTGGTACAACCTGAAAGTGATCTTTATGGCCTGTATTTGAGCTGCATTTCATTCAACCAATAATTAGCAGTATTATCGATTATAATTTGAATATATTGAAATTATATTTTGTGAATATTGTAGTTCTAAACAGTAGTATATCTTTAGCAATACTATGATATGCGTTTGTTTTAAAGAAAAAACCATGGAATGGAAACCCTTCCTAAAATAAAATTAGAAAAAATGGAATAAAAAAATTGCAGAAAGTAGGGTGATTTTGTCATGTTGTCCCAATTTGTTTATTATTATAAAGGTTTGGCTGCTGACAATTACTGGTTTCTTGACTTGAATAATAATAAAGTTGCAACAATGTTGTTAATAATAACTTGAAATGTATCAACATTCTTCATAATTTGTTGAATTCAATACCATAACATTTTGCCAATTTGACTACATCGATAATATTTTCTATAAGTTAAATCCTTTTCTATACTCACCATAAATCGAAGATAACTCAATTAGTTTAAGTATATACTCTCAACTAAAAGACCATGTGTTCGAATATTTTTTTTTGGCATAACAAGGATAAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAGATAAAACAGATAGGAAGCATGAAAATAAAAAATAAATAAAAAAAAGGGAAAAAAAGAAGCAAAAGTTGGTCTTCCATCCCAATCTAAGACAATCAAATCTTTTAGTATGAGAAGCAAACTAGTGAGATACTAAATGCACCTTCTCGATTGCAATCTCATAAAGTGTTCACATAAGTTTGGAATCACATTGACATTTGACATTTTGAACAAGGACTCCACTAAGACATTAAATTTATTCTTATCATTAAATTCTTACAAAAATTTTGTTTCAATATTTTAGAACAATATATGTAATTTTTTATTTCTGTTTGAGTTCAACAATATGCTACCGAGATGCAGTGGAAGATTCAAAGCTCTAAAAAAAGTGTATAATTTAGGTCGGTTTGGTAACCATTTAGTTTTTTATTTTGGGTTTTGAAGACTAAACATATTTTTTCTTATAATATTTGTATCTTCCTTGTAAGTTGAATTTTTAGCTAAATTTCAAAAATAAAAATAAATTAATTTTTTATTTATTTTAAATTTGACTTGATTTTTTAAGCAAAAATTTAGTGATGAAAAAAACAAAGACAAAATAGTTATCAAAAAAGTTTTATACTATAACTTTTGCCAATTTTTTTTATCAATTTTTAAATATAACAAAACAAGCCAATTTATTTAATTGGGCTCTTTGCTTGAAAGTTGAATCCTTCAGAATTGGAGGTTGAAACCAGGCTCGTCAGTCGTCCCATTGCGCAAGACGAAAGGAAAGATTCTCCCATTTTCCGATCAACCAACAGGTCCTTTTTCTCCTTCCACTCCGCCATTGCATTCTTCTCGATTATTTTTCCCGTACTTCCCTATTTGGTTCCAGGAAAGATAATGTTTCAGTTTCCAATTTGTAAGCTGAGAAAAGCATATCATGATTGCCTTAGTTTTGATTTTCTGAAGTAGGTTTTGCTTGGAGCTTAATCGAACTGAAACGGGGGAACAATTTTCAGCAATGTCGGAGAAAGGCGATAAGGGTTTTCCCGTGCAGAAAAAACCTGCAAAGTCTTCCCTCAAATCTTCCGCTCTCAAGGATGGTTCGTATCGTTAATGTCTTTTGACGCTATCGGGAATGGGGTGGTTGAGTATCGTTTGCAATTATCTACTCGTGCGTATTTCAACTTCATGCGTCTTTTGCCCCCATTGAACTGAATTCACTCTTGTCCAAATTATTTCTCAATCTTCAACAAAGTTTTTGTTTTGAGAATCTCTTCGATTTTAAAGCTCCCATGACTACTGTTTGTACATGACTGAAAAATTGTGAACCCTTGTTGCTTCCAGCTTCCATGGTTTATGCTTGTAGTTTGCTAAATGGATCATGGGTCACAGGAATACATCATTAACTATAATTAGTGATCTTTTCTCTGGAACTGGGCATTTAAACGAGGTGGATCAGGATTAGAATAATTAAGCATGATTGGAAATTCTTTTAGGCATCACGGTTTCTTCTCTTCTACACTTTTTTTTTTGTTTGCCCAATGTATATCAAATGCTTCCTGACTTGTTGCATAGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCCAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGTCAATAGTCTTTCTTATCATCCTAACAGCGATACTTTTTGTGTTATAAAAATCACTTGATGTGCCAATGTTAAATCAATTATCTGTCTAAATTGGTGTGCTTGTTATATAAAACTACTTACTTCGGAAGTAATTGTACATACAGGATCAGTTGATGCGCAGAATAATCTTTCAATGAAATACAGTGGCAAAAATGGTACTAGTTTTAAATGTTCATATTATTTCTATTCTACTCTTATCTTTCTGCTGTCTAACTTCAGCAGCCTGTTCTTTGTATTCTTCTGTTAATGCAAATATTCTCCTTTCCAATCGTGGCTTGTAGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAGCGTGAAGGCTTCTGTTGCAAAGGAACCCCAACCACTAGAATTGAAGATTGAGCAAGGTGGGTACTTCCTTGAATTCGAATATTGTTATATTCGGTATTGCATAGTCTTGAATGTATCAGTTTTTGCTATTACTCATGGCATGGAAGATCGGTGTTGCCTTACTTTTTATGGCAACTGACTGTTTTCTCTTTTCTGTTCTGAGGCTGTATTTTTTAGATATGTTTTCATATAATAGCAAAATGAGTCAACTTATTTACAGATATAGTCTATCAATGTCTATCAGTTTGAAAAAACTTTTTGTTTTTTGCTTTTTGCTTTTTTACTATATTTGAAAATATTTCCAACATTTTTGCCATTTAAAACAATCACCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACTGATGGGATAATAGGAATATGTCTCCTAGTATGAAGTTGTTCGTTTGATGAAATTTTTGGACAGTATTTATATACTATTCAAATTATGCTGTTTATTGTTGTTTTGGTTTTAAATTGGCGTGCAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTTCTATCTGCAGATCCAACCATAAAAATTCCTACGTAAGTAAATATTATTTACTATTTATTTGAAAGAATAATTTCACATGCTTACAAACTTGAATTGCTTGTACCTTAGGTCATTTGATAGGGGATTGCAATACGCTAAAAGAGCCAACCACTATGTAAATAGCGAGTCAGTTAGACCAGTTCTCGAGTATCCTTGATCTGATGAATAGGCCATTAGATTGTATTGTTAATTTCTTTGTATCTCTTTTTTTGTTCTTGGATGGAATCAATTTATATACTACTTTGGAAGTTTGCTTTGTACCAACCCTGCTCTGGTGTGCTGTATGGTGCTCTTTTTCATTCTAGTCCGTTCATTTGATTGCTTAACTGAAAGTTCTAGAACCCTCAAGAAACATGGCGTAACGGATAGTGAGGTAGTTATATCTATCTTCTTTTTTGCCTTTCTCATAATTAGTTCTTTGGAATAATGAACTGATCCAGTATTAATATTAATTCAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCAACCTTGAAGGTACGGTATAAGTTTTTGAAATTTCTATAATTTACATCACCATGCCATATGAATATAGTTAAAACACACACTTTGTTTCTGCCTATCGAAGTATAGCTAAACTGGCCAAGGCATTGTACCCTCAATCAGAATGTTAGAGGGTTAAATCTTCACCTCTACTTGTTGAACTCAAAAAAACACATTTAGTTTCTGTACTTGTTCTGCTAATTTGGTCCTTGTACTTTTCTCAGATCAAGTAGTAGGTCATACAAGTTTATAAATGTAACAACTAAGTCTTGACTAGAATAATTTAGGGATTTGCTAATGGGTAAAAAGTATGCCCGTGTGATCAATTACAAACGATGTGAAAATATATAATACAAGAACTGAAGACTTTAAAAGAGCGATAGTAAAATAATTAAAAATGTGTCCTTGCCTTTTCTGGTTAATTTGATTTTGCCTCCCTCTTGGTATGTTGTTATTCTAAAAGTATATGCAAAATATTTAAGACTTGGTAGCATTTCTCTGGTTTGTCCTCCATATAATTTTAGGATTGAACCATTATATCTATTATAATATAATAAAATAATAAAAAATGGGTCCGCCTTGTTTGGAGGTAATTTTTTTAAACTGAAACTATTCTTAAATGTTTCTCAAGTACATTTCAATATGTGTCAAACACGGTAAAAAATTGAAAAGCGTGATTAATTAGTCAAACATTTTAAAGATGCCTCACTACACACTGTTTGGGGTCCTTCATAGATGGGTTAGATTGCTTATGCATCATTGGATTTTTGTTGTTACAACTTACAATTGTTATTTATTCATTTATTTGGTTTGATCATGGTTACATAAAAAGCAGAGCAAAAGAAACAAGCTAAGTGAACCTCTCAACAATGTCTTGAGCGAGCTAGCCAAGGTAAAATCATCCTGAAGTCATAGGGTTGCTTGCTGTTGCTGTTGCTGTTGCTCAGGTCCGGTTGCGTTCTCCCCTTCCTGTGAAGATTGTTTTATGGCATTTGAAAATTAGGACCTTTTCTTTTCAA

mRNA sequence

ATGAAATTGGAAATGTTCTGTTCTGCTCGCATTTCACCTGAATCCGAGCCCAAATTGGAGGTTGAAACCAGGCTCGTCAGTCGTCCCATTGCGCAAGACGAAAGGAAAGATTCTCCCATTTTCCGATCAACCAACAGGTTTTGCTTGGAGCTTAATCGAACTGAAACGGGGGAACAATTTTCAGCAATGTCGGAGAAAGGCGATAAGGGTTTTCCCGTGCAGAAAAAACCTGCAAAGTCTTCCCTCAAATCTTCCGCTCTCAAGGATGGATCAGTTGATGCGCAGAATAATCTTTCAATGAAATACAGTGGCAAAAATGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAGCGTGAAGGCTTCTGTTGCAAAGGAACCCCAACCACTAGAATTGAAGATTGAGCAAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTTCTATCTGCAGATCCAACCATAAAAATTCCTACGTCATTTGATAGGGGATTGCAATACGCTAAAAGAGCCAACCACTATGTAAATAGCGAGTCAGTTAGACCAGTTCTCGATTTGCTTTGTACCAACCCTGCTCTGGTGTGCTGTATGGTGCTCTTTTTCATTCTAGTCCGTTCATTTGATTGCTTAACTGAAAGTTCTAGAACCCTCAAGAAACATGGCGTAACGGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCAACCTTGAAGGTCCGGTTGCGTTCTCCCCTTCCTGTGAAGATTGTTTTATGGCATTTGAAAATTAGGACCTTTTCTTTTCAA

Coding sequence (CDS)

ATGAAATTGGAAATGTTCTGTTCTGCTCGCATTTCACCTGAATCCGAGCCCAAATTGGAGGTTGAAACCAGGCTCGTCAGTCGTCCCATTGCGCAAGACGAAAGGAAAGATTCTCCCATTTTCCGATCAACCAACAGGTTTTGCTTGGAGCTTAATCGAACTGAAACGGGGGAACAATTTTCAGCAATGTCGGAGAAAGGCGATAAGGGTTTTCCCGTGCAGAAAAAACCTGCAAAGTCTTCCCTCAAATCTTCCGCTCTCAAGGATGGATCAGTTGATGCGCAGAATAATCTTTCAATGAAATACAGTGGCAAAAATGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAGCGTGAAGGCTTCTGTTGCAAAGGAACCCCAACCACTAGAATTGAAGATTGAGCAAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTCTTCTATCTGCAGATCCAACCATAAAAATTCCTACGTCATTTGATAGGGGATTGCAATACGCTAAAAGAGCCAACCACTATGTAAATAGCGAGTCAGTTAGACCAGTTCTCGATTTGCTTTGTACCAACCCTGCTCTGGTGTGCTGTATGGTGCTCTTTTTCATTCTAGTCCGTTCATTTGATTGCTTAACTGAAAGTTCTAGAACCCTCAAGAAACATGGCGTAACGGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCAACCTTGAAGGTCCGGTTGCGTTCTCCCCTTCCTGTGAAGATTGTTTTATGGCATTTGAAAATTAGGACCTTTTCTTTTCAA

Protein sequence

MKLEMFCSARISPESEPKLEVETRLVSRPIAQDERKDSPIFRSTNRFCLELNRTETGEQFSAMSEKGDKGFPVQKKPAKSSLKSSALKDGSVDAQNNLSMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPLPVKIVLWHLKIRTFSFQ

Homology

[Close]

BLAST of CaUC01G020710 vs. NCBI nr
Match: XP_038881040.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Benincasa hispida] >XP_038881041.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-75
Identity = 168/241 (69.71%), Postives = 179/241 (74.27%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD--------------------GSVDAQNNLSMKY 122
           MS+KG+KGFPVQKKPAKSSLKSSALKD                    GSVDAQ+  SMKY
Sbjct: 1   MSDKGEKGFPVQKKPAKSSLKSSALKDGKDDSLSKLKKGRKVQFDAQGSVDAQSTFSMKY 60

Query: 123 SGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 182
           SGKNGDLGKGGKGV+ KAS AKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM
Sbjct: 61  SGKNGDLGKGGKGVNTKASAAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 120

Query: 183 VLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVRS 242
           VLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVL+                     
Sbjct: 121 VLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLE--------------------- 180

Query: 243 FDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPL--PVKIVLWH 282
                    TLKKHG+T+SEICVIANVCPDTTDEVFALLP+LK + RS L  P+  VL+ 
Sbjct: 181 ---------TLKKHGLTESEICVIANVCPDTTDEVFALLPSLKGK-RSKLSEPLNNVLFE 210

[Close]

BLAST of CaUC01G020710 vs. NCBI nr
Match: XP_038881037.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881038.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881039.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 292.0 bits (746), Expect = 5.8e-75
Identity = 168/245 (68.57%), Postives = 179/245 (73.06%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD------------------------GSVDAQNNL 122
           MS+KG+KGFPVQKKPAKSSLKSSALKD                        GSVDAQ+  
Sbjct: 1   MSDKGEKGFPVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAQSTF 60

Query: 123 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 182
           SMKYSGKNGDLGKGGKGV+ KAS AKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGVNTKASAAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 183 QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFI 242
           QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVL+                 
Sbjct: 121 QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLE----------------- 180

Query: 243 LVRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPL--PVKI 282
                        TLKKHG+T+SEICVIANVCPDTTDEVFALLP+LK + RS L  P+  
Sbjct: 181 -------------TLKKHGLTESEICVIANVCPDTTDEVFALLPSLKGK-RSKLSEPLNN 214

[Close]

BLAST of CaUC01G020710 vs. NCBI nr
Match: XP_011658103.1 (DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus] >XP_011658104.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 7.1e-73
Identity = 165/241 (68.46%), Postives = 174/241 (72.20%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD--------------------GSVDAQNNLSMKY 122
           MSEKG+KGF VQK+PAKSSLKSSALKD                    GSVDA N  SMKY
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDGKDDSLSKLKKGRKVQFDAQGSVDATNTFSMKY 60

Query: 123 SGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 182
           SGKNGDLGKGGKG + KAS+AKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM
Sbjct: 61  SGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 120

Query: 183 VLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVRS 242
           V LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVL+                     
Sbjct: 121 VFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE--------------------- 180

Query: 243 FDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPL--PVKIVLWH 282
                    TLKK+GVTDSEICVIANVCPDTTDEVFALLP+LK R RS L  P+  VL  
Sbjct: 181 ---------TLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK-RKRSKLSEPINNVLSE 210

[Close]

BLAST of CaUC01G020710 vs. NCBI nr
Match: XP_008440960.1 (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-72
Identity = 157/223 (70.40%), Postives = 166/223 (74.44%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD--------------------GSVDAQNNLSMKY 122
           MSEKG+KGF VQKKPAKSSLKSSALKD                    GSVDA N+ SMKY
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDGKDDSLSKLKKGRKVQFDAQGSVDAPNSFSMKY 60

Query: 123 SGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 182
           SGKNGD+GKGGKG + KASVAKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM
Sbjct: 61  SGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 120

Query: 183 VLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVRS 242
           V LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVL+                     
Sbjct: 121 VFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE--------------------- 180

Query: 243 FDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLK 266
                    TLKK+G+TDSEICVIANVCPDTTDEVFALLP+LK
Sbjct: 181 ---------TLKKYGITDSEICVIANVCPDTTDEVFALLPSLK 193

[Close]

BLAST of CaUC01G020710 vs. NCBI nr
Match: XP_004134991.2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP_011658100.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP_011658101.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >KGN49020.1 hypothetical protein Csa_002874 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-72
Identity = 165/245 (67.35%), Postives = 174/245 (71.02%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD------------------------GSVDAQNNL 122
           MSEKG+KGF VQK+PAKSSLKSSALKD                        GSVDA N  
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 123 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 182
           SMKYSGKNGDLGKGGKG + KAS+AKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 183 QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFI 242
           QDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVL+                 
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE----------------- 180

Query: 243 LVRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPL--PVKI 282
                        TLKK+GVTDSEICVIANVCPDTTDEVFALLP+LK R RS L  P+  
Sbjct: 181 -------------TLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK-RKRSKLSEPINN 214

[Close]

BLAST of CaUC01G020710 vs. ExPASy Swiss-Prot
Match: Q6DBA5 (DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPD4 PE=1 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-20
Identity = 79/228 (34.65%), Postives = 102/228 (44.74%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKDGSVDAQN-----------------------NLS 122
           MSEKG KG        KSSLKS   KDG  D  +                       N+S
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDGGKDGSSTKLKKGRKIHFDQRTPPANYKILNVS 60

Query: 123 MKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQ 182
                      K GK      S        ELK   +LP+N   +C+MDCEA Q+L GI+
Sbjct: 61  SDQQPFQSSAAKCGKSDKPTKSSKNSLHSFELK---DLPEN--AECMMDCEAFQILDGIK 120

Query: 183 DQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFIL 242
            Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VL+                  
Sbjct: 121 GQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE------------------ 180

Query: 243 VRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVR 268
                        LK +G++D E+CVIAN   ++ DEV A +P+LK +
Sbjct: 181 ------------PLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK 183

[Close]

BLAST of CaUC01G020710 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-13
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 124 KEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQY 183
           +E    ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQY
Sbjct: 5   EEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQY 64

Query: 184 AKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVRSFDCLTESSRTLKKHGVTDSEI 243
            KR + Y N ++VR V ++                              L +H +T+ E+
Sbjct: 65  VKRFSRYKNPDAVRQVREI------------------------------LSRHQLTEFEL 118

Query: 244 CVIANVCPDTTDEVFALLPTLKVRLRS 271
           CV+ N+CP+T +E  A++P+LK + R+
Sbjct: 125 CVLGNLCPETVEEAVAMVPSLKTKGRA 118

[Close]

BLAST of CaUC01G020710 vs. ExPASy TrEMBL
Match: A0A1S3B2C7 (DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 5.8e-73
Identity = 157/223 (70.40%), Postives = 166/223 (74.44%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD--------------------GSVDAQNNLSMKY 122
           MSEKG+KGF VQKKPAKSSLKSSALKD                    GSVDA N+ SMKY
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDGKDDSLSKLKKGRKVQFDAQGSVDAPNSFSMKY 60

Query: 123 SGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 182
           SGKNGD+GKGGKG + KASVAKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM
Sbjct: 61  SGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQM 120

Query: 183 VLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVRS 242
           V LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVL+                     
Sbjct: 121 VFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE--------------------- 180

Query: 243 FDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLK 266
                    TLKK+G+TDSEICVIANVCPDTTDEVFALLP+LK
Sbjct: 181 ---------TLKKYGITDSEICVIANVCPDTTDEVFALLPSLK 193

[Close]

BLAST of CaUC01G020710 vs. ExPASy TrEMBL
Match: A0A0A0KH45 (RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 9.9e-73
Identity = 165/245 (67.35%), Postives = 174/245 (71.02%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD------------------------GSVDAQNNL 122
           MSEKG+KGF VQK+PAKSSLKSSALKD                        GSVDA N  
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 123 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 182
           SMKYSGKNGDLGKGGKG + KAS+AKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 183 QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFI 242
           QDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVL+                 
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE----------------- 180

Query: 243 LVRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPL--PVKI 282
                        TLKK+GVTDSEICVIANVCPDTTDEVFALLP+LK R RS L  P+  
Sbjct: 181 -------------TLKKYGVTDSEICVIANVCPDTTDEVFALLPSLK-RKRSKLSEPINN 214

[Close]

BLAST of CaUC01G020710 vs. ExPASy TrEMBL
Match: A0A1S3B2C2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.7e-72
Identity = 157/227 (69.16%), Postives = 166/227 (73.13%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD------------------------GSVDAQNNL 122
           MSEKG+KGF VQKKPAKSSLKSSALKD                        GSVDA N+ 
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 123 SMKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 182
           SMKYSGKNGD+GKGGKG + KASVAKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 183 QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFI 242
           QDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVL+                 
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLE----------------- 180

Query: 243 LVRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLK 266
                        TLKK+G+TDSEICVIANVCPDTTDEVFALLP+LK
Sbjct: 181 -------------TLKKYGITDSEICVIANVCPDTTDEVFALLPSLK 197

[Close]

BLAST of CaUC01G020710 vs. ExPASy TrEMBL
Match: A0A6J1EGC4 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433844 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.9e-69
Identity = 160/242 (66.12%), Postives = 174/242 (71.90%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD--------------------GSVDAQNNLSMKY 122
           MSEKG+KGFPVQKKP KSSLKSSA KD                    GSVDAQ NLS+K+
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDGKDDSLSKSKKGRKVQFDAQGSVDAQINLSLKF 60

Query: 123 SGKNGDLGKGGKGVS-VKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQ 182
           SGKNGDLGKGGKG++  KASV+KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQ
Sbjct: 61  SGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQ 120

Query: 183 MVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVR 242
           M LLSADPTIKIPTSFDRGLQYAKRANHYVN+E VRPVL+                    
Sbjct: 121 MALLSADPTIKIPTSFDRGLQYAKRANHYVNTELVRPVLE-------------------- 180

Query: 243 SFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPL--PVKIVLW 282
                     TLKK+GV DSEICVIANVCPDTTDEVF+L+P+LK + RS L  P+  VL 
Sbjct: 181 ----------TLKKYGVADSEICVIANVCPDTTDEVFSLVPSLKSK-RSKLTEPLNNVLI 211

[Close]

BLAST of CaUC01G020710 vs. ExPASy TrEMBL
Match: A0A6J1EJD9 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433844 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 160/246 (65.04%), Postives = 174/246 (70.73%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKD------------------------GSVDAQNNL 122
           MSEKG+KGFPVQKKP KSSLKSSA KD                        GSVDAQ NL
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 123 SMKYSGKNGDLGKGGKGVS-VKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 182
           S+K+SGKNGDLGKGGKG++  KASV+KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 183 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFF 242
           IQDQM LLSADPTIKIPTSFDRGLQYAKRANHYVN+E VRPVL+                
Sbjct: 121 IQDQMALLSADPTIKIPTSFDRGLQYAKRANHYVNTELVRPVLE---------------- 180

Query: 243 ILVRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVRLRSPL--PVK 282
                         TLKK+GV DSEICVIANVCPDTTDEVF+L+P+LK + RS L  P+ 
Sbjct: 181 --------------TLKKYGVADSEICVIANVCPDTTDEVFSLVPSLKSK-RSKLTEPLN 215

[Close]

BLAST of CaUC01G020710 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-21
Identity = 79/228 (34.65%), Postives = 102/228 (44.74%), Query Frame = 0


Query: 63  MSEKGDKGFPVQKKPAKSSLKSSALKDGSVDAQN-----------------------NLS 122
           MSEKG KG        KSSLKS   KDG  D  +                       N+S
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDGGKDGSSTKLKKGRKIHFDQRTPPANYKILNVS 60

Query: 123 MKYSGKNGDLGKGGKGVSVKASVAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQ 182
                      K GK      S        ELK   +LP+N   +C+MDCEA Q+L GI+
Sbjct: 61  SDQQPFQSSAAKCGKSDKPTKSSKNSLHSFELK---DLPEN--AECMMDCEAFQILDGIK 120

Query: 183 DQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFIL 242
            Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VL+                  
Sbjct: 121 GQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE------------------ 180

Query: 243 VRSFDCLTESSRTLKKHGVTDSEICVIANVCPDTTDEVFALLPTLKVR 268
                        LK +G++D E+CVIAN   ++ DEV A +P+LK +
Sbjct: 181 ------------PLKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK 183

[Close]

BLAST of CaUC01G020710 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-14
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 124 KEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPTSFDRGLQY 183
           +E    ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQY
Sbjct: 5   EEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQY 64

Query: 184 AKRANHYVNSESVRPVLDLLCTNPALVCCMVLFFILVRSFDCLTESSRTLKKHGVTDSEI 243
            KR + Y N ++VR V ++                              L +H +T+ E+
Sbjct: 65  VKRFSRYKNPDAVRQVREI------------------------------LSRHQLTEFEL 118

Query: 244 CVIANVCPDTTDEVFALLPTLKVRLRS 271
           CV+ N+CP+T +E  A++P+LK + R+
Sbjct: 125 CVLGNLCPETVEEAVAMVPSLKTKGRA 118

The following BLAST results are available for this feature:

BLAST of CaUC01G020710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881040.1	2.0e-75	69.71	DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Benincasa hispi...	[more]
XP_038881037.1	5.8e-75	68.57	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispi...	[more]
XP_011658103.1	7.1e-73	68.46	DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus] >XP...	[more]
XP_008440960.1	1.2e-72	70.40	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis m...	[more]
XP_004134991.2	2.1e-72	67.35	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP...	[more]

BLAST of CaUC01G020710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DBA5	4.2e-20	34.65	DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
O48890	2.2e-13	29.93	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]

BLAST of CaUC01G020710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B2C7	5.8e-73	70.40	DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A0A0KH45	9.9e-73	67.35	RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4...	[more]
A0A1S3B2C2	1.7e-72	69.16	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1EGC4	3.9e-69	66.12	DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 OS=Cucurbita mos...	[more]
A0A6J1EJD9	1.1e-68	65.04	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita mos...	[more]

BLAST of CaUC01G020710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15950.1	3.0e-21	34.65	RNA polymerase II, Rpb4, core protein	[more]
AT5G09920.1	1.6e-14	29.93	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 122..286 e-value: 5.7E-22 score: 79.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..89
None	No IPR available	PANTHER	PTHR21297:SF2	DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4	coord: 232..267 coord: 78..203
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 232..267 coord: 78..203
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 136..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G020710.1	CaUC01G020710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0000166	nucleotide binding