CaUC01G016440 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G016440
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 29917181 .. 29917492 (+)
RNA-Seq ExpressionCaUC01G016440
SyntenyCaUC01G016440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAACACAGAAACGCCGAATCTAAATTCTCCGGCGATGCCCAACCTCAGAACTTCCTCTTTATTTCTAATCATCCTGCTAATCGCCGCCCCACGGTTCTTTCTTCTCGTAGATTGCAGACCGCTCCGGCCCGGTTCAACGATAGAGCCGCACCGTGTTCATAATAATGTCTCTGCTCTTGCCAGCCAGAACCCGGAAACAGCAGTTTCGCCGCCGATATATTCCGGTAGCCGCCGTATCGGAGACGACAACGGCGGCGTAGCTTTTACTTTTGCTTCGGGACCCAGCAGAAAGGGTGCTGGCCATTAA

mRNA sequence

ATGCCGAACACAGAAACGCCGAATCTAAATTCTCCGGCGATGCCCAACCTCAGAACTTCCTCTTTATTTCTAATCATCCTGCTAATCGCCGCCCCACGGTTCTTTCTTCTCGTAGATTGCAGACCGCTCCGGCCCGGTTCAACGATAGAGCCGCACCGTGTTCATAATAATGTCTCTGCTCTTGCCAGCCAGAACCCGGAAACAGCAGTTTCGCCGCCGATATATTCCGGTAGCCGCCGTATCGGAGACGACAACGGCGGCGTAGCTTTTACTTTTGCTTCGGGACCCAGCAGAAAGGGTGCTGGCCATTAA

Coding sequence (CDS)

ATGCCGAACACAGAAACGCCGAATCTAAATTCTCCGGCGATGCCCAACCTCAGAACTTCCTCTTTATTTCTAATCATCCTGCTAATCGCCGCCCCACGGTTCTTTCTTCTCGTAGATTGCAGACCGCTCCGGCCCGGTTCAACGATAGAGCCGCACCGTGTTCATAATAATGTCTCTGCTCTTGCCAGCCAGAACCCGGAAACAGCAGTTTCGCCGCCGATATATTCCGGTAGCCGCCGTATCGGAGACGACAACGGCGGCGTAGCTTTTACTTTTGCTTCGGGACCCAGCAGAAAGGGTGCTGGCCATTAA

Protein sequence

MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPETAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH
Homology
BLAST of CaUC01G016440 vs. NCBI nr
Match: TYK12856.1 (hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 74/105 (70.48%), Postives = 79/105 (75.24%), Query Frame = 0

Query: 1   MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSA 60
           M  TE PNLNSPAMPN R SS  LIILL+AAPRFFL VDCRPLRPGS I+ H VH N SA
Sbjct: 1   MLKTEMPNLNSPAMPNYRISSFLLIILLMAAPRFFLSVDCRPLRPGSPIDRHHVH-NASA 60

Query: 61  LASQNPET--AVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH 104
           +    PET  A +  I SG RRIGD+ GGVAFT ASGPSRKGAGH
Sbjct: 61  IPHDGPETQKAATALIDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

BLAST of CaUC01G016440 vs. NCBI nr
Match: KAE8647506.1 (hypothetical protein Csa_003725 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 5.1e-26
Identity = 70/106 (66.04%), Postives = 77/106 (72.64%), Query Frame = 0

Query: 1   MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSA 60
           MP+TE PNL SP M N R SS  LII LIAAPRFFL VDCRPLRPGS I+ H VH+N SA
Sbjct: 1   MPHTEMPNLYSPPMLNPRISSFLLIIFLIAAPRFFLYVDCRPLRPGSPIDRHHVHDNASA 60

Query: 61  LASQNP---ETAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH 104
           L    P   + A + PI SG+  IGD+ GGVAFT ASGPSRKGAGH
Sbjct: 61  LPHNAPPETQKAATAPIDSGAPPIGDEGGGVAFTMASGPSRKGAGH 106

BLAST of CaUC01G016440 vs. NCBI nr
Match: KAG6604156.1 (hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 8   NLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPE 67
           NLNSPAMP ++ SSL LI++L+AA RF  LVDCRPLR GSTIE H+  NN SA++S   E
Sbjct: 5   NLNSPAMPKMKNSSLLLIMVLMAATRFLPLVDCRPLRSGSTIE-HQRTNNGSAISSS--E 64

Query: 68  TAVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH 104
            A S P  SGSR  GD  GGVAFT ASGPSRKGAGH
Sbjct: 65  IAASSPEDSGSRSSGD--GGVAFTLASGPSRKGAGH 95

BLAST of CaUC01G016440 vs. NCBI nr
Match: KAG6595007.1 (hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 50/90 (55.56%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 14  MPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSALASQNPETAVSPP 73
           M N+++SSL LI+ LIAA  F LLVD RPLR GST + H + NN SALA +    A SP 
Sbjct: 1   MANVKSSSLLLIVALIAATGFVLLVDGRPLRSGSTNQSHPI-NNGSALAEKPETAAASPT 60

Query: 74  IYSGSRRIGDDNGGVAFTFASGPSRKGAGH 104
             S   + G   GGV FT  SGPSRKGAGH
Sbjct: 61  SDSDIHQSGGGGGGVVFTLVSGPSRKGAGH 89

BLAST of CaUC01G016440 vs. ExPASy TrEMBL
Match: A0A5D3CR30 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004480 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.9e-28
Identity = 74/105 (70.48%), Postives = 79/105 (75.24%), Query Frame = 0

Query: 1   MPNTETPNLNSPAMPNLRTSSLFLIILLIAAPRFFLLVDCRPLRPGSTIEPHRVHNNVSA 60
           M  TE PNLNSPAMPN R SS  LIILL+AAPRFFL VDCRPLRPGS I+ H VH N SA
Sbjct: 1   MLKTEMPNLNSPAMPNYRISSFLLIILLMAAPRFFLSVDCRPLRPGSPIDRHHVH-NASA 60

Query: 61  LASQNPET--AVSPPIYSGSRRIGDDNGGVAFTFASGPSRKGAGH 104
           +    PET  A +  I SG RRIGD+ GGVAFT ASGPSRKGAGH
Sbjct: 61  IPHDGPETQKAATALIDSGGRRIGDEGGGVAFTMASGPSRKGAGH 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK12856.11.2e-2770.48hypothetical protein E5676_scaffold255G004480 [Cucumis melo var. makuwa][more]
KAE8647506.15.1e-2666.04hypothetical protein Csa_003725 [Cucumis sativus][more]
KAG6604156.11.6e-1966.67hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595007.11.5e-1255.56hypothetical protein SDJN03_11560, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CR305.9e-2870.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G016440.1CaUC01G016440.1mRNA