CaUC01G015010 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G015010
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	TFIIS N-terminal domain-containing protein
Location	Ciama_Chr01: 28229903 .. 28233177 (-)
RNA-Seq Expression	CaUC01G015010
Synteny	CaUC01G015010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCGAATGGGAAAAGAATTCATGGGGTCAGAGCTGTGAAGGGAAGGCAAAATCCTATCTGGATATAGGAACAAATTTCAACCCAACACGCTTCAATATTCTCCCTTTTTTTCTTTTCATTCTCTTAATTCTTTGCTCAGATCAAATTTCCGGCCGTCGTTTCGTTTCAGAAACTTCGGTTTTCGTTTCCATGGTGGAGCGTGGACAGTTTCAATATTGATTCTGTCATGATGATGATGATGATGGATTGATTAGACTATTAACTAAACCAGAAACTCCGAAAGGAAAAGAAATTCTCGACTTGGGTTTTGATTTTGGGACGTTTTTCTTCTTCTTCCTTTTCTTCTTCTTCTTCTTGTTTCAGCTAATGTAAATTGACCCACCTCCATAAGTTTTGCTGTAATTCTTTGAGGACGAAATTCCGGCTGTTCTTCGTTTTCTCAAGGAATATTCCGCAGTTTTTTGATTTGGGTTCTTTTTAATTTATTGTTTCAGTTGCTTTTTGTGTCTTTAATTTTGTTTCTGTGACTTGGGTTTCTGTAATTTTGACGAGTCGTATTTTTTTTCTTCTTCTTCTTCCTTTCGACGGCCACTGTGAGTTTGGATTCCTGAAAACGATCGGTTAAACTTTTCTTCAGGATCGAATCAGATCTATTCTGTGTCATTTGGGTTTCTTTTCCTTTTTGTTTCTTTCAAAAAATTTCATTATGGATTATGACGATTTTGGTTTTCCACCACTGGGTTTTCTCTGCAATTTCTAGCGTTTTTTCCCCCTTCTCTTTTGTTTATTGTCAGAGTCTGGAAGTGGAATAATAAACTTCCGTCGTAGATCCGTTTCTGTTTCCAGAGTCCACTGCTGAAAACGAGAACAGATTGTTTATCGGGAAGATAACCTTTCTCTCAATCGCCGATTCTTCTAATCGGACTCAGTTTTTCTTTAAAAAAAATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATTGATACAGCAATGGAGGTCGCTTCATTAGATTACGGTAATCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCTGAGGTGAAGGGAACTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGACGACGATGGAGTAGACCCATATGGAGGATTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGGTCTTCTTCTTTTGATTCTGATTGTATAGAATTGTTTGATTGTTTTAAAGGAATTTTCTCTTAAATTTACCAATTTGTGATTGTTTGGCTTGTTTCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGTGAGTGTTTATGGGTTTTTTTTTTTCTTGTTCTTTGTAAATGTAAATTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCTTAATTCTTCTTGTTCTTGTTATCTTTTGTATAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGTACATAAAATTGGTGCATATATGAATGAATGGATGATGCTTGGTAAATTTCAGAAGAGGATGGTTGGTGAATAATCTGTTCAATTAAACTGTTTGTTAATAATTTCAATTTGTGTTTTTCATCAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGGTAGAGACTAATTTTAACTTCATAATTCTATTCCTTCAGAAGGTTAAATCTTAGTCACCCTTGTTGAAAAATTTAGCTAAGAATGGTTTCTATTGTTATTGACAGCTGATGGTGACTCACCCCAGCAAAAAGCTCCTCAAAATGGTTATCATCAGGTGAACTGAAATCATTGATTTATGGGTTCTAATGTTTGTTTTCTTTATGCGAAAAGATTGAGAAGTTCATCCTTATTGTAGTTTCTTTACGCCCATGTTTCTTACGTTTTGTTGTTGTCACTGTGGTGTAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAGTGAGTATTTAATTAAAGCTTCTTGTTTCACTTGCCATCATTTGCCACGGATTTATTTGGTTTCTTATTTTCTCTCCCTGTTTCTTTGTCTTGTTAGATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCTGTTCCGAGAAGAGATGCTCCGCCTAAACCAGCACAACCAGCTCCAACGTCTTCTTTAACTCCTCAAAATGTATGGTAACCAAATTAGAGTCTTTTAACTCTATGTTTGGTTGCCAAAAATGGAGGAAGAAAATTGAAACTTTCGATTCTTATGCTTCCGAAAACATAACAAACTTAACTCAAACTGGCATCAATTGTGTTGAAATTTGACAAAATTTGAGTGGTAGGTCTAAATTTTCTCAGGTCCCAGATGATATGCATGGTCTTACTTACAGTCTGCCAAAATTTGTCATCAACAAATAGCTGTTTTAGGAAGGTTTTCTTATTATGTCAATTGAATTGATGGCCATTTGCAGAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTAGAAAAAGGCTTCAAGAGAATTATAAAGAAGCTGAAAATGGTTTGGCCTACAGCTTTCTTCCCTTTGATTTCATTTCTGACTTTTTTTGGAACAAACAAACCATACTAATTACTGTTTGTTTCTTTTATTGAAGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATTAGGTTCTCCGTTATCGTCGAATCAGTTTATCATCCTTTCTATTTGTTACATCTTTTGATCATTAAATTCTTAACTTCTCTATCAAGTTTAAAGAGAATCAAAAACTACTTTTCGCCTAAATTTTCTCTTAATAAGCAATGCTAATACTGATTATATTGTTCATCTAGATTCGAAGGCCATCTCTTTCTCTCTCTCTCTCTC

mRNA sequence

ATGAATGCGAATGGGAAAAGAATTCATGGGGTCAGAGCTGTGAAGGGAAGGCAAAATCCTATCTGGATATAGGAACAAATTTCAACCCAACACGCTTCAATATTCTCCCTTTTTTTCTTTTCATTCTCTTAATTCTTTGCTCAGATCAAATTTCCGGCCGTCGTTTCGTTTCAGAAACTTCGGTTTTCGTTTCCATGGTGGAGCGTGGACAGTTTCAATATTGATTCTGTCATGATGATGATGATGATGGATTGATTAGACTATTAACTAAACCAGAAACTCCGAAAGGAAAAGAAATTCTCGACTTGGGTTTTGATTTTGGGACGTTTTTCTTCTTCTTCCTTTTCTTCTTCTTCTTCTTGTTTCAGCTAATGTAAATTGACCCACCTCCATAAGTTTTGCTGTAATTCTTTGAGGACGAAATTCCGGCTGTTCTTCGTTTTCTCAAGGAATATTCCGCAGTTTTTTGATTTGGGTTCTTTTTAATTTATTGTTTCAGTTGCTTTTTGTGTCTTTAATTTTGTTTCTGTGACTTGGGTTTCTGTAATTTTGACGAGTCGTATTTTTTTTCTTCTTCTTCTTCCTTTCGACGGCCACTGTGAGTTTGGATTCCTGAAAACGATCGGTTAAACTTTTCTTCAGGATCGAATCAGATCTATTCTGTGTCATTTGGGTTTCTTTTCCTTTTTGTTTCTTTCAAAAAATTTCATTATGGATTATGACGATTTTGGTTTTCCACCACTGGGTTTTCTCTGCAATTTCTAGCGTTTTTTCCCCCTTCTCTTTTGTTTATTGTCAGAGTCTGGAAGTGGAATAATAAACTTCCGTCGTAGATCCGTTTCTGTTTCCAGAGTCCACTGCTGAAAACGAGAACAGATTGTTTATCGGGAAGATAACCTTTCTCTCAATCGCCGATTCTTCTAATCGGACTCAGTTTTTCTTTAAAAAAAATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATTGATACAGCAATGGAGGTCGCTTCATTAGATTACGGTAATCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCTGAGGTGAAGGGAACTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGACGACGATGGAGTAGACCCATATGGAGGATTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGACTCACCCCAGCAAAAAGCTCCTCAAAATGGTTATCATCAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCTGTTCCGAGAAGAGATGCTCCGCCTAAACCAGCACAACCAGCTCCAACGTCTTCTTTAACTCCTCAAAATAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTAGAAAAAGGCTTCAAGAGAATTATAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGATATTTGGCAATGCAGTAAAGCAACATCTTCTAAATTAGGTTCTCCGTTATCGTCGAATCAGTTTATCATCCTTTCTATTTGTTACATCTTTTGATCATTAAATTCTTAACTTCTCTATCAAGTTTAAAGAGAATCAAAAACTACTTTTCGCCTAAATTTTCTCTTAATAAGCAATGCTAATACTGATTATATTGTTCATCTAGATTCGAAGGCCATCTCTTTCTCTCTCTCTCTCTC

Coding sequence (CDS)

ATGGTTCGGTTGGATTTAGATGATTTCCGAACTATATTAGATACAGCCGGTGTCGATGTTTGGACTTTCATTGATACAGCAATGGAGGTCGCTTCATTAGATTACGGTAATCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGCCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCTGAGGTGAAGGGAACTTCCCCTTCAACGCCGCAGTTCGTTGTAGTGGAAGGGGACGACGATGGAGTAGACCCATATGGAGGATTGTTTGATGATGAACAGAAGAAGGTTTTGGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGAATTGCTTCAAAACTTAGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTGAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAAACAGCTACACTCTTAGCTGATGGTGACTCACCCCAGCAAAAAGCTCCTCAAAATGGTTATCATCAGGTTCCTGATTTTGCATACTCTCCGAATCCACACAATGGAGGTTCTGGGTCCGATAGAAATAACTCAGAACCGGAACCGAAGGGAAAATCTGTTCCGAGAAGAGATGCTCCGCCTAAACCAGCACAACCAGCTCCAACGTCTTCTTTAACTCCTCAAAATAGACAGAAAGAACAACAGAAAGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTAGAAAAAGGCTTCAAGAGAATTATAAAGAAGCTGAAAATGCTAAAAGGCAAAGAACAATCCAAGTCATGGACATCCATGAGATCCCAAAGCCAAAGAATGCCTTCTTCTCAAAGAACAAAGGCAGTGGTGGTGGTTCTCAAGGCAGACACTGGTGA

Protein sequence

MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW

Homology

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BLAST of CaUC01G015010 vs. NCBI nr
Match: XP_038882890.1 (probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hispida])

HSP 1 Score: 670.6 bits (1729), Expect = 7.1e-189
Identity = 338/345 (97.97%), Postives = 340/345 (98.55%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQS  EVKG SPSTPQFV V+GDDDGVDP+GGLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQSPGEVKGASPSTPQFVAVDGDDDGVDPHGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPED LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDGLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. NCBI nr
Match: XP_008440997.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis melo] >KAA0025564.1 putative mediator of RNA polymerase II transcription subunit 26c [Cucumis melo var. makuwa] >TYK12438.1 putative mediator of RNA polymerase II transcription subunit 26c [Cucumis melo var. makuwa])

HSP 1 Score: 668.7 bits (1724), Expect = 2.7e-188
Identity = 338/345 (97.97%), Postives = 338/345 (97.97%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQ S EVKG SPSTPQFVVVEGDDDG DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKP Q APTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. NCBI nr
Match: XP_004141981.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativus])

HSP 1 Score: 656.8 bits (1693), Expect = 1.1e-184
Identity = 334/345 (96.81%), Postives = 334/345 (96.81%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQ S EVK  SPSTPQFVVVEGDDDG DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDA PKP Q APTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. NCBI nr
Match: XP_023544969.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 648.7 bits (1672), Expect = 2.9e-182
Identity = 327/345 (94.78%), Postives = 333/345 (96.52%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQS  E K  SPSTPQFVVVEGDD+GVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+AD DSPQQK PQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADSDSPQQKVPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNN EPEPKGKSVPRRDAPPKPAQPAP SS TPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. NCBI nr
Match: XP_022950583.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata] >KAG7034423.1 putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 647.1 bits (1668), Expect = 8.4e-182
Identity = 326/345 (94.49%), Postives = 333/345 (96.52%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQS  E K  SPSTPQFVVVEGDD+GVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNN EPEPKGKSVPRRDAPPKPAQPAP SS TPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 5.8e-93
Identity = 204/363 (56.20%), Postives = 256/363 (70.52%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  DTDRNHD------GRSNGCEIKQSSAE--VKGTSPSTPQFV----VVEGDDDGVDPYGGL 123
           D     +      GR N   + + + E   +G + +  + V    V   DDD  DP+ GL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAPQNG-YHQVPDFAYS 243
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD DSP QKA  NG   QVPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHNGGSGSDRNN--SEPEPKGKSV---PRRD--APPKPAQPAPTSSLTPQNRQKEQQK 303
           P P NG S S +N+  +EPE K + V   PRR+  +P KP++P+P+    P+++   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQG 346
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]

BLAST of CaUC01G015010 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.4e-16
Identity = 119/432 (27.55%), Postives = 183/432 (42.36%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  -----------TDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGV------DP 125
                       +R   G   G        EV G S  + +     GD++ +      D 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKES-KANSSRGDNNQIVSNYTFDE 126

Query: 126 YGGLFDDEQ------KKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGR 185
              L D+ +      K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+
Sbjct: 127 AEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGK 186

Query: 186 HVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQ-------PGEQTATLLADGDSPQQ 245
            VN LRKHSS+ +R+L K L+ +WKE+VD+WV   +         E     + D +    
Sbjct: 187 AVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAFP 246

Query: 246 KAP---------QNGY---HQVPDFAYSPNP-----HNGGSGSDR---NNSEPEPKGKSV 305
             P          NG+   H      +  NP     HN     +R   N ++ +P+G  +
Sbjct: 247 SLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEGTQM 306

Query: 306 PRRDAPPKPAQPA----------PTSSLTPQNRQKE------------------------ 346
             +DAP +  +P+          P    T Q  + E                        
Sbjct: 307 RIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRK 366

[Close]

BLAST of CaUC01G015010 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-12
Identity = 101/388 (26.03%), Postives = 168/388 (43.30%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVLEIK 123
           D    H   S   +  +++ E+ G      +     GD       G        +V+ I+
Sbjct: 68  D----HLELSIAGD--EAAVEIVGVGGGGDR-----GDSGVATGEGEEASVSVDEVMRIR 127

Query: 124 EQLEIPHQPEDA-LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 183
           + L      +D+ L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L  
Sbjct: 128 DILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFA 187

Query: 184 KWKEIVDEWVRLNQPGEQTAT-----LLADGDSPQQKAPQNGYHQVPDFAYSPN------ 243
           +WK +VD+W  +N P E   T      L      +++A  +  H +  +A  PN      
Sbjct: 188 EWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDLDIYAPEPNGFELSQ 247

Query: 244 -----------PHNGGSGSDRNNSEP---EPKG-------------KSVPRRDAPPKPAQ 303
                       H+  S  +R +       PKG             +   R +A  +P +
Sbjct: 248 ILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRREEADVRPMK 307

Query: 304 PAPTSSLTPQNRQKEQQKE-----------ANFDSQKLAS-----------------ARK 325
            + T  + P+ + K+ +++                +KLA                  A++
Sbjct: 308 HSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPDSKFEFAKR 367

[Close]

BLAST of CaUC01G015010 vs. ExPASy Swiss-Prot
Match: Q96MN5 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Homo sapiens OX=9606 GN=TCEANC2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-05
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 123 KEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 182
           K  LE+P Q ++ LVE LQ L     + + LK T IG  VN++RKHS ++V  L + +  
Sbjct: 46  KTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYT 105

Query: 183 KWKEIVDE 191
           +WK   ++
Sbjct: 106 EWKTFTEK 113

[Close]

BLAST of CaUC01G015010 vs. ExPASy Swiss-Prot
Match: B0UYI1 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-04
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 123 KEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN-DVRRLVKHLV 182
           K  LE+P QP++ ++E L+ L     + + LK T IG  VN LRKHS + +++ L K + 
Sbjct: 45  KSILELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVY 104

Query: 183 RKWKEIVDE 191
           + W+  ++E
Sbjct: 105 KHWRTFIEE 113

[Close]

BLAST of CaUC01G015010 vs. ExPASy TrEMBL
Match: A0A5A7SIU9 (Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00130 PE=4 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.3e-188
Identity = 338/345 (97.97%), Postives = 338/345 (97.97%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQ S EVKG SPSTPQFVVVEGDDDG DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKP Q APTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. ExPASy TrEMBL
Match: A0A1S3B2G2 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo OX=3656 GN=LOC103485244 PE=4 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.3e-188
Identity = 338/345 (97.97%), Postives = 338/345 (97.97%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQ S EVKG SPSTPQFVVVEGDDDG DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDAPPKP Q APTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. ExPASy TrEMBL
Match: A0A0A0KHV9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 5.2e-185
Identity = 334/345 (96.81%), Postives = 334/345 (96.81%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDRNHDGRSNGCEIKQ S EVK  SPSTPQFVVVEGDDDG DPY GLFDDEQKKVL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIP QPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKH SNDVRRLVKHL
Sbjct: 121 EIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKSVPRRDA PKP Q APTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. ExPASy TrEMBL
Match: A0A6J1GFA3 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita moschata OX=3662 GN=LOC111453638 PE=4 SV=1)

HSP 1 Score: 647.1 bits (1668), Expect = 4.1e-182
Identity = 326/345 (94.49%), Postives = 333/345 (96.52%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQS  E K  SPSTPQFVVVEGDD+GVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300
           RNN EPEPKGKSVPRRDAPPKPAQPAP SS TPQNRQKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           NYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345

[Close]

BLAST of CaUC01G015010 vs. ExPASy TrEMBL
Match: A0A6J1ILB4 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita maxima OX=3661 GN=LOC111478070 PE=4 SV=1)

HSP 1 Score: 640.2 bits (1650), Expect = 5.0e-180
Identity = 326/346 (94.22%), Postives = 333/346 (96.24%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPP+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVL 120
           RNCDTDR +DGRSNGCEIKQS  E K  SPSTPQFVVVEGDD+GVDPYGGLFDDEQKKVL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240
           VRKWKEIVDEWVRLNQPGEQTATL+ADGDSPQQK  QNGYHQVPDFAYSPNPHNGGSGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVSQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKSVPRRDAPPKPAQPAP-TSSLTPQNRQKEQQKEANFDSQKLASARKRLQ 300
           RNN EPEPKGKSVPRRDA PKPAQPAP +SS TPQNRQKEQQKEANFDSQKLASARKRLQ
Sbjct: 241 RNNVEPEPKGKSVPRRDALPKPAQPAPMSSSYTPQNRQKEQQKEANFDSQKLASARKRLQ 300

Query: 301 ENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRHW 346
           ENYKEAENAK+QRTIQVMDIHEIPKPKN FFSKNKG+GGGSQGRHW
Sbjct: 301 ENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 346

[Close]

BLAST of CaUC01G015010 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 342.4 bits (877), Expect = 4.1e-94
Identity = 204/363 (56.20%), Postives = 256/363 (70.52%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VASLDYG +LK RRD IVERLYA TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  DTDRNHD------GRSNGCEIKQSSAE--VKGTSPSTPQFV----VVEGDDDGVDPYGGL 123
           D     +      GR N   + + + E   +G + +  + V    V   DDD  DP+ GL
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGL 120

Query: 124 FDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSN 183
           FDDEQK ++EIKE+LE P   E++LVELLQNL DMDITFQAL+ETDIGRHVNR+RKH SN
Sbjct: 121 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 180

Query: 184 DVRRLVKHLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAPQNG-YHQVPDFAYS 243
           +VRRL K LV+KWKE VDEWV+ NQPG+ +  +L+AD DSP QKA  NG   QVPDF YS
Sbjct: 181 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 240

Query: 244 PNPHNGGSGSDRNN--SEPEPKGKSV---PRRD--APPKPAQPAPTSSLTPQNRQKEQQK 303
           P P NG S S +N+  +EPE K + V   PRR+  +P KP++P+P+    P+++   + K
Sbjct: 241 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EHK 300

Query: 304 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQG 346
           E +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIH+IPKPK   F   KG G    G
Sbjct: 301 EVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKG-GSSQGG 353

[Close]

BLAST of CaUC01G015010 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-17
Identity = 119/432 (27.55%), Postives = 183/432 (42.36%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L++     +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCR--VNRCVGCD 66

Query: 66  -----------TDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGV------DP 125
                       +R   G   G        EV G S  + +     GD++ +      D 
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKES-KANSSRGDNNQIVSNYTFDE 126

Query: 126 YGGLFDDEQ------KKVLEIKE-QLEIPHQPEDALVELLQNLADMDITFQALKETDIGR 185
              L D+ +      K+V  IKE  L    +P   L++ L++L  M +    LK T+IG+
Sbjct: 127 AEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGK 186

Query: 186 HVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQ-------PGEQTATLLADGDSPQQ 245
            VN LRKHSS+ +R+L K L+ +WKE+VD+WV   +         E     + D +    
Sbjct: 187 AVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAFP 246

Query: 246 KAP---------QNGY---HQVPDFAYSPNP-----HNGGSGSDR---NNSEPEPKGKSV 305
             P          NG+   H      +  NP     HN     +R   N ++ +P+G  +
Sbjct: 247 SLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEGTQM 306

Query: 306 PRRDAPPKPAQPA----------PTSSLTPQNRQKE------------------------ 346
             +DAP +  +P+          P    T Q  + E                        
Sbjct: 307 RIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRK 366

[Close]

BLAST of CaUC01G015010 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-14
Identity = 61/201 (30.35%), Postives = 99/201 (49.25%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVLEIK 123
           D    H   S   +  +++ E+ G      +     GD       G        +V+ I+
Sbjct: 68  D----HLELSIAGD--EAAVEIVGVGGGGDR-----GDSGVATGEGEEASVSVDEVMRIR 127

Query: 124 EQLEIPHQPEDA-LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 183
           + L      +D+ L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L  
Sbjct: 128 DILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFA 187

Query: 184 KWKEIVDEWVRLNQPGEQTAT 204
           +WK +VD+W  +N P E   T
Sbjct: 188 EWKRLVDQW--MNTPEEMAGT 193

[Close]

BLAST of CaUC01G015010 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-13
Identity = 101/388 (26.03%), Postives = 168/388 (43.30%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRNHDGRSNGCEIKQSSAEVKGTSPSTPQFVVVEGDDDGVDPYGGLFDDEQKKVLEIK 123
           D    H   S   +  +++ E+ G      +     GD       G        +V+ I+
Sbjct: 68  D----HLELSIAGD--EAAVEIVGVGGGGDR-----GDSGVATGEGEEASVSVDEVMRIR 127

Query: 124 EQLEIPHQPEDA-LVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 183
           + L      +D+ L+E L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L K L  
Sbjct: 128 DILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFA 187

Query: 184 KWKEIVDEWVRLNQPGEQTAT-----LLADGDSPQQKAPQNGYHQVPDFAYSPN------ 243
           +WK +VD+W  +N P E   T      L      +++A  +  H +  +A  PN      
Sbjct: 188 EWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDLDIYAPEPNGFELSQ 247

Query: 244 -----------PHNGGSGSDRNNSEP---EPKG-------------KSVPRRDAPPKPAQ 303
                       H+  S  +R +       PKG             +   R +A  +P +
Sbjct: 248 ILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRREEADVRPMK 307

Query: 304 PAPTSSLTPQNRQKEQQKE-----------ANFDSQKLAS-----------------ARK 325
            + T  + P+ + K+ +++                +KLA                  A++
Sbjct: 308 HSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPDSKFEFAKR 367

The following BLAST results are available for this feature:

BLAST of CaUC01G015010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882890.1	7.1e-189	97.97	probable mediator of RNA polymerase II transcription subunit 26c [Benincasa hisp...	[more]
XP_008440997.1	2.7e-188	97.97	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc...	[more]
XP_004141981.1	1.1e-184	96.81	probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativu...	[more]
XP_023544969.1	2.9e-182	94.78	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo...	[more]
XP_022950583.1	8.4e-182	94.49	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita mosc...	[more]

BLAST of CaUC01G015010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFC7	5.8e-93	56.20	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q9FHK9	4.4e-16	27.55	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	3.9e-12	26.03	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
Q96MN5	2.7e-05	38.24	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]
B0UYI1	1.0e-04	36.23	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]

BLAST of CaUC01G015010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIU9	1.3e-188	97.97	Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A1S3B2G2	1.3e-188	97.97	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A0A0KHV9	5.2e-185	96.81	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4...	[more]
A0A6J1GFA3	4.1e-182	94.49	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita mo...	[more]
A0A6J1ILB4	5.0e-180	94.22	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita ma...	[more]

BLAST of CaUC01G015010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09850.1	4.1e-94	56.20	Transcription elongation factor (TFIIS) family protein	[more]
AT5G05140.1	3.1e-17	27.55	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	3.2e-14	30.35	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	2.7e-13	26.03	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 288..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	PANTHER	PTHR47210:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..345
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 116..189 e-value: 3.60234E-19 score: 78.8894
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 119..190 e-value: 1.7E-9 score: 47.6
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 113..202 e-value: 1.7E-23 score: 84.2
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 117..198
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 139..188 e-value: 7.1E-13 score: 48.4
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 114..191 score: 25.527599
IPR044790	Mediator of RNA polymerase II transcription subunit 26c-like	PANTHER	PTHR47210	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G015010.1	CaUC01G015010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus