CaUC01G013880 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G013880
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein PXR1
Location	Ciama_Chr01: 26821436 .. 26821726 (-)
RNA-Seq Expression	CaUC01G013880
Synteny	CaUC01G013880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAAGATAAAGAGAAACATGGAGAAGAAGAAGAAGATGAAGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAGATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

mRNA sequence

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAAGATAAAGAGAAACATGGAGAAGAAGAAGAAGATGAAGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAGATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

Coding sequence (CDS)

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAAGATAAAGAGAAACATGGAGAAGAAGAAGAAGATGAAGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAGATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

Protein sequence

MGETSEEKQESKVEKEKKEKKDKEKHGEEEEDEDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS

Homology

[Close]

BLAST of CaUC01G013880 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-19
Identity = 76/95 (80.00%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MGETSEEKQESKVEKEKKEKKDKEKHGEEEEDEDEKKKEKKEKKKKEKEPADKKDPSKLR 60
          MGETSEEK E KV  EKKEKKDKEKHGE E++E       K+KKKKEK PADKKDP+KLR
Sbjct: 1  MGETSEEKHEGKV--EKKEKKDKEKHGEGEDEE-------KKKKKKEKNPADKKDPTKLR 60

Query: 61 QKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS 96
          QKLEKLEAKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 61 QKLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of CaUC01G013880 vs. NCBI nr
Match: KAG6584261.1 (hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-14
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MGETSEEKQESKVEKEKKEKKDKEKHGEEEEDEDEKKKEKKE--------KKKKEKEPAD 60
           MG TSEEK E KVEK K++KKDKEKH EEEED+D  KK+ K+        K+KK+K+PAD
Sbjct: 1   MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEEDDDHSKKKGKDKDKEEGEKKEKKKKDPAD 60

Query: 61  KKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 94
            KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAE NA P
Sbjct: 61  MKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 100

[Close]

BLAST of CaUC01G013880 vs. NCBI nr
Match: KAG7019857.1 (hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 74/103 (71.84%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   MGETSEEKQESKVEKEKKEKKDKEKHGEEEEDED---------EKKKEKKEKK-KKEKEP 60
           MG TSEEK E KVEK K++KKDKEKH EEEE+ED         +K KE+ EKK KK+K+P
Sbjct: 1   MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEEEEDDDHGKKKGKDKDKEEAEKKEKKKKDP 60

Query: 61  ADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 94
           AD KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAE NA P
Sbjct: 61  ADMKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 102

[Close]

BLAST of CaUC01G013880 vs. NCBI nr
Match: XP_022137487.1 (nucleolar protein 58 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-13
Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MGETSEEKQESK--VEKEKKEKKDKEKHGEEEEDEDEKKKEKKEKKKKEKEPADKKDPSK 60
           MGE SEEK E +   +KEKKEKKDKEKH E E  E EKKKEKKEKKK  K P DKKDP+K
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKK--KNPEDKKDPTK 69

Query: 61  LRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPPSS 97
           LRQKLEKLE KM+ LA+KKEE+LKLL EAE NA    PPPSS
Sbjct: 70  LRQKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPSS 109

[Close]

BLAST of CaUC01G013880 vs. NCBI nr
Match: XP_022923831.1 (protein PXR1 [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MGETSEEKQESKVEKEKKEKKDKEKHGEEEEDEDEKKKEKKE--------KKKKEKEPAD 60
           MG TSEEK E KVEK K++KKDKEKH EEE+D  +KK + K+        K+KK+K+PAD
Sbjct: 27  MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPAD 86

Query: 61  KKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 94
            KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAE NA P
Sbjct: 87  MKDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

[Close]

BLAST of CaUC01G013880 vs. ExPASy TrEMBL
Match: A0A0A0LQQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.5e-20
Identity = 81/97 (83.51%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1  MGETSEEKQESKVE-KEKKEKKDKEKHGEEEEDEDEKKKEKKEKKKKEKEPADKKDPSKL 60
          MGETSEEK E +VE KEKKEKKDKEKHGEE EDE     EKK+KKKKEK+PADKKDP+KL
Sbjct: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDE-----EKKKKKKKEKDPADKKDPTKL 60

Query: 61 RQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS 97
          RQKLEKLE KMQALAVKKEEILKLLHEAE N PPPSS
Sbjct: 61 RQKLEKLEVKMQALAVKKEEILKLLHEAEQN-PPPSS 91

[Close]

BLAST of CaUC01G013880 vs. ExPASy TrEMBL
Match: A0A1S3AV24 (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.6e-19
Identity = 76/95 (80.00%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MGETSEEKQESKVEKEKKEKKDKEKHGEEEEDEDEKKKEKKEKKKKEKEPADKKDPSKLR 60
          MGETSEEK E KV  EKKEKKDKEKHGE E++E       K+KKKKEK PADKKDP+KLR
Sbjct: 1  MGETSEEKHEGKV--EKKEKKDKEKHGEGEDEE-------KKKKKKEKNPADKKDPTKLR 60

Query: 61 QKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS 96
          QKLEKLEAKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 61 QKLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of CaUC01G013880 vs. ExPASy TrEMBL
Match: A0A6J1C8D9 (nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.8e-13
Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MGETSEEKQESK--VEKEKKEKKDKEKHGEEEEDEDEKKKEKKEKKKKEKEPADKKDPSK 60
           MGE SEEK E +   +KEKKEKKDKEKH E E  E EKKKEKKEKKK  K P DKKDP+K
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKK--KNPEDKKDPTK 69

Query: 61  LRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPPSS 97
           LRQKLEKLE KM+ LA+KKEE+LKLL EAE NA    PPPSS
Sbjct: 70  LRQKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPSS 109

[Close]

BLAST of CaUC01G013880 vs. ExPASy TrEMBL
Match: A0A6J1E7S6 (protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MGETSEEKQESKVEKEKKEKKDKEKHGEEEEDEDEKKKEKKE--------KKKKEKEPAD 60
           MG TSEEK E KVEK K++KKDKEKH EEE+D  +KK + K+        K+KK+K+PAD
Sbjct: 27  MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPAD 86

Query: 61  KKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 94
            KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAE NA P
Sbjct: 87  MKDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

[Close]

BLAST of CaUC01G013880 vs. ExPASy TrEMBL
Match: A0A6J1K499 (protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.0e-11
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MGETSEEKQESKVEKEKK---EKKDKEKHGEEEEDEDEKKKEKKEKKKKEKEPADKKDPS 60
           MG  SEEK E KVEK++K   E+ D+++  ++ +D+D++ KE ++K+KK K+PADKKDP+
Sbjct: 1   MGGNSEEKHEDKVEKKEKKHEEEGDEKRKEKKGKDKDKEGKEGEKKEKKPKDPADKKDPT 60

Query: 61  KLRQKLEKLEAKMQALAVKKEEILKLLHEAEHN---APPPSS 97
           KLRQKLEKLE KMQALAVKKEE+LKLLHEAE N   APPPSS
Sbjct: 61  KLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPPSS 102

[Close]

BLAST of CaUC01G013880 vs. TAIR 10
Match: AT5G62750.1 (unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae - 48; Bacteria - 2086; Metazoa - 8361; Fungi - 2243; Plants - 1040; Viruses - 210; Other Eukaryotes - 10954 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 50/100 (50.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 7   EKQESKVEKEKKEKKDKEKH--GEEEEDEDEKKKEKKEKKKKEKEPADKKDPSKLRQKLE 66
           EK+E K +K+KK+K + +K+  GEE ED+++K K+K +K KKEK P DKKDP KL+ KL+
Sbjct: 25  EKKEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNPEDKKDPEKLKMKLQ 84

Query: 67  KLEAKMQALAVKKEEILKLLHEAEH--------NAPPPSS 97
           K+E K+QA+ +KK+EI+KL+H+AE         +APPP++
Sbjct: 85  KIEEKIQAMVLKKDEIVKLIHDAEQAKPSTAAVDAPPPTN 124

The following BLAST results are available for this feature:

BLAST of CaUC01G013880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437610.1	7.4e-19	80.00	PREDICTED: protein PXR1 [Cucumis melo]	[more]
KAG6584261.1	4.2e-14	71.29	hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019857.1	1.6e-13	71.84	hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022137487.1	7.9e-13	71.57	nucleolar protein 58 [Momordica charantia]	[more]
XP_022923831.1	5.1e-12	68.32	protein PXR1 [Cucurbita moschata]	[more]

BLAST of CaUC01G013880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC01G013880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQQ8	5.5e-20	83.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1	[more]
A0A1S3AV24	3.6e-19	80.00	protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1	[more]
A0A6J1C8D9	3.8e-13	71.57	nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1	[more]
A0A6J1E7S6	2.5e-12	68.32	protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1	[more]
A0A6J1K499	8.0e-11	63.73	protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1	[more]

BLAST of CaUC01G013880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62750.1	3.3e-09	50.00	unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..49
None	No IPR available	COILS	Coil	Coil	coord: 63..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR36812	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 3..94
None	No IPR available	PANTHER	PTHR36812:SF2	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 3..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G013880.1	CaUC01G013880.1	mRNA