CaUC01G013680 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G013680
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 26632366 .. 26633418 (-)
RNA-Seq ExpressionCaUC01G013680
SyntenyCaUC01G013680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCCACCTAGGACTGTTATTAGCAGAATCTGTTAGTGGAATGCCAAAAAATTTGTTTCCTTTACCAAAGACAGGGGTCCTTGAACTTTCATGCACATCCTCAGGTTCAGGTAACAATGGCACTTTAACAGCTTTCACATCTTCCTTAACTGCACTCCCATCAAATCCAGACACCAAAATTATTCACAAACAAACCAAATGAAAGGATGTTGTAGAGAAAGAAAGAAAAATTGGACTTACATTGATGAGCATCAAGATTTCTTCCATGTAAACCTTCGTCATCTTCGACGAACTCCGATTCACTATCTGACAACAATTTGAGTTCGGTATAACGAATGTGCGGCAATTCCAAGCTAGTTTTGTCGTCGTGTCTGAAAGCGGGCGTAAACGAAGCTCGTGGTGAAGGAGCAGGAGCTTGTGAAAAGGTACTCCCATTTTTCCCTTTTGAATTGGAGGATTTAACTTTCAATGGCTCCCCACAACAAGAACAACAACAATAATTACCACCAACCCCTTTCTCCATTTGCAGGCCTTCGTCTTTCTTCCCCACAGGCGGCAAGCTCACAACTTGACGATTATCATCCTCAACAAAACATTCAAGATCCTTGTGCAAAATTCCGACGAGCGATTTGTAGGTATTGCAATCGGATTCCTTTTCAGTCGCGAAAGAGAGAAGACAAACCTCACACATCTTCCGAATGTCGGAGAGTTTCTTGTGGTTGTGACAATATGCAAGAGATGAAATATCCTTCTTGTGTCCTTCACAAATGGAATTGTTGTAATAAAAATCTGAATTTTTGTTAACTAAAACATGGTCGATTCTTGTGCAGAACAAACAAGGAACTCGCAATTCGAAGAACTTGGCGAATTCGTTGGCCAAAAATGCAACAAACCCATCAATGAAAAGCAAAATTATGAGAACCCATTCAAGAACTGCACAAACTACAAAATGTGGAAACTTTCCCAGCTCTTGTTCTACAAAACGGGTGAAAGAACGTTTCGTCGCCATCTTTACCCCCTTCTAGTTTCTTTTCCCCAAAAATAAAAAGTCCA

mRNA sequence

AGCCCACCTAGGACTGTTATTAGCAGAATCTGTTAGTGGAATGCCAAAAAATTTGTTTCCTTTACCAAAGACAGGGGTCCTTGAACTTTCATGCACATCCTCAGGTTCAGGTAACAATGGCACTTTAACAGCTTTCACATCTTCCTTAACTGCACTCCCATCAAATCCAGACACCAAAATTATTCACAAACAAACCAAATGAAAGGATGTTGTAGAGAAAGAAAGAAAAATTGGACTTACATTGATGAGCATCAAGATTTCTTCCATGTAAACCTTCGTCATCTTCGACGAACTCCGATTCACTATCTGACAACAATTTGAGTTCGGTATAACGAATGTGCGGCAATTCCAAGCTAGTTTTGTCGTCGTGTCTGAAAGCGGGCGTAAACGAAGCTCGTGGTGAAGGAGCAGGAGCTTGTGAAAAGGCCTTCGTCTTTCTTCCCCACAGGCGGCAAGCTCACAACTTGACGATTATCATCCTCAACAAAACATTCAAGATCCTTGTGCAAAATTCCGACGAGCGATTTGTAGGTATTGCAATCGGATTCCTTTTCAGTCGCGAAAGAGAGAAGACAAACCTCACACATCTTCCGAATGTCGGAGAGTTTCTTGTGGTTGTGACAATATGCAAGAGATGAAATATCCTTCTTGTGTCCTTCACAAATGGAATTGTTGTAATAAAAATCTGAATTTTTGTTAACTAAAACATGGTCGATTCTTGTGCAGAACAAACAAGGAACTCGCAATTCGAAGAACTTGGCGAATTCGTTGGCCAAAAATGCAACAAACCCATCAATGAAAAGCAAAATTATGAGAACCCATTCAAGAACTGCACAAACTACAAAATGTGGAAACTTTCCCAGCTCTTGTTCTACAAAACGGGTGAAAGAACGTTTCGTCGCCATCTTTACCCCCTTCTAGTTTCTTTTCCCCAAAAATAAAAAGTCCA

Coding sequence (CDS)

ATGTGCGGCAATTCCAAGCTAGTTTTGTCGTCGTGTCTGAAAGCGGGCGTAAACGAAGCTCGTGGTGAAGGAGCAGGAGCTTGTGAAAAGGCCTTCGTCTTTCTTCCCCACAGGCGGCAAGCTCACAACTTGACGATTATCATCCTCAACAAAACATTCAAGATCCTTGTGCAAAATTCCGACGAGCGATTTGTAGGTATTGCAATCGGATTCCTTTTCAGTCGCGAAAGAGAGAAGACAAACCTCACACATCTTCCGAATGTCGGAGAGTTTCTTGTGGTTGTGACAATATGCAAGAGATGA

Protein sequence

MCGNSKLVLSSCLKAGVNEARGEGAGACEKAFVFLPHRRQAHNLTIIILNKTFKILVQNSDERFVGIAIGFLFSREREKTNLTHLPNVGEFLVVVTICKR
Homology
[Close]
BLAST of CaUC01G013680 vs. NCBI nr
Match: PON34167.1 (hypothetical protein PanWU01x14_346610 [Parasponia andersonii])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 38  RRQAH-NLTIIILNKTFKILVQNSDERFVGIAIGFLFSREREKTNLTHLPNVGEFLVVVT 97
           RRQA  N+ ++IL +  ++LV+NS+E  VG AIGFL   E ++ + TH PNVGE LVVV 
Sbjct: 59  RRQAEMNMVVVILYEAVQVLVKNSNEGLVGTAIGFLLGGEGKEASFTHSPNVGELLVVVA 118

[Close]
BLAST of CaUC01G013680 vs. ExPASy TrEMBL
Match: A0A2P5ACB1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_346610 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.3e-07
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 38  RRQAH-NLTIIILNKTFKILVQNSDERFVGIAIGFLFSREREKTNLTHLPNVGEFLVVVT 97
           RRQA  N+ ++IL +  ++LV+NS+E  VG AIGFL   E ++ + TH PNVGE LVVV 
Sbjct: 59  RRQAEMNMVVVILYEAVQVLVKNSNEGLVGTAIGFLLGGEGKEASFTHSPNVGELLVVVA 118

The following BLAST results are available for this feature:
BLAST of CaUC01G013680 vs. NCBI nr
Match NameE-valueIdentityDescription
PON34167.11.5e-0650.82hypothetical protein PanWU01x14_346610 [Parasponia andersonii][more]
BLAST of CaUC01G013680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G013680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5ACB17.3e-0750.82Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_346610 PE... [more]
BLAST of CaUC01G013680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G013680.1CaUC01G013680.1mRNA