CaUC01G013190 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G013190
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr01: 26068850 .. 26069029 (+)
RNA-Seq Expression	CaUC01G013190
Synteny	CaUC01G013190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTGCAGACCAGATGCTTGTTCGGGAACCCTTGGAAGAGCGGCGATTGGGCGGAGCAGCCGATGAGGAGAAAGGCGTTATCGGCGGTTGGATTCAGGTACGGCGACCGCCACTCCTCGATGTCGAAGCCATTGCCTCGACCGCCGAGGACGATGGTATCGCAGGTGGACATGTGA

mRNA sequence

ATGTTTCTGCAGACCAGATGCTTGTTCGGGAACCCTTGGAAGAGCGGCGATTGGGCGGAGCAGCCGATGAGGAGAAAGGCGTTATCGGCGGTTGGATTCAGGTACGGCGACCGCCACTCCTCGATGTCGAAGCCATTGCCTCGACCGCCGAGGACGATGGTATCGCAGGTGGACATGTGA

Coding sequence (CDS)

ATGTTTCTGCAGACCAGATGCTTGTTCGGGAACCCTTGGAAGAGCGGCGATTGGGCGGAGCAGCCGATGAGGAGAAAGGCGTTATCGGCGGTTGGATTCAGGTACGGCGACCGCCACTCCTCGATGTCGAAGCCATTGCCTCGACCGCCGAGGACGATGGTATCGCAGGTGGACATGTGA

Protein sequence

MFLQTRCLFGNPWKSGDWAEQPMRRKALSAVGFRYGDRHSSMSKPLPRPPRTMVSQVDM

Homology

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BLAST of CaUC01G013190 vs. ExPASy TrEMBL
Match: A0A2N9HF37 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38152 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 35/57 (61.40%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 2  FLQTRCLFGNPWKSGDWAEQPMRRKALSAVGFRYGDRHSSMSKPLPRPPRTMVSQVD 59
          F   +C  G PW +GD AEQP+    LSAVGF YG RH S SKPLP PP TMVS VD
Sbjct: 5  FRHGKCFPGKPWNNGDRAEQPINMNTLSAVGFMYGSRHDSTSKPLPLPPSTMVSHVD 61

The following BLAST results are available for this feature:

BLAST of CaUC01G013190 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC01G013190 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC01G013190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HF37	1.7e-11	61.40	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38152 PE=4 SV=1	[more]

BLAST of CaUC01G013190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G013190.1	CaUC01G013190.1	mRNA