CaUC01G012650 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G012650
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	D-3-phosphoglycerate dehydrogenase
Location	Ciama_Chr01: 24700063 .. 24701439 (+)
RNA-Seq Expression	CaUC01G012650
Synteny	CaUC01G012650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACAATTCTCTAACGTGTTGTACAATGGACTCTCAGGATTTCACCGATGGACACCTTTCCCCACCCGTCAACCAACTCAGGCTGAGTTCAAGATTAATGCCTTATGGGTTTGACACCAAACTCCCCAAACGGAAGATGCCAAACTCAGCGTGCACTAGTTTGTTTGAGTGTTTCCAGGAGGCACCATAGAATGAACAAAATGTGAGATGGCAGATGCTTGTGCAAGTGATTAAACAAATTGTCTTACAAATTGTGAAGGACCCCAATGAAACAAATACTAACATCATATTTCAACTAAAAACACGACTATACAGTTTGTTCAATCACTTGCCGGTTGCACAGGCATCTCAGAACATCCATGAGCAAACGATTCAAGCTAAAATACGGACAAAGAGGACCTAAGACAAACTAAACTTATTGTGGATTGGACCAAACTTCCAAATTGAGATACCCCTTAACCATAGGGACAACTATTAGGCATGTTCATCAGCATTGAATCAGTGTCCTTGTCAAAATAGATTACTCAACTTCACCATAGAAACGCAGCGAACCCTAAATACAGGTAGCAGTCGGATTCCATTTCAGGTACAAATACAAATTCGTCAAGGAGAAATTCAGGAAACAATGCCAACAATGTGGCCATAATGAAGCAAATGACAAAAGAATTCACGTTATATAAACCGATTTTCATTCATTCAGTTCCAAAATGTGCAACAAAAGGCAAAGAAATCAACAATTCAGAACAGTCATGCTGCTTTTTACACGAGAACCCCCTAACATCTATGAATCTAAGAGCTAGTAAACTTGGTAACAGCCTTTGTACCCTCAGAGACGGCGTGCTTGGCCAACTCACCAGGAAGAACAAGGCGTACCGCCGTTTGGATCTCCCGAGAGGTGATGGTCGGCTTCTTGTTGTAGCGAGCAAGCTTGGAAGATTCCTGAGCTAGCTTCTCGAAAATGTCGTTGATGAAACTGTTCATAATCCCCATGGCTTTGCTGGAGATTCCAATGTCGGGATGGACTTGCTTGAGCACCTTGAAGATGTAGATCTTGTAAGTCTCAACGCTCTTCTTGGCCTTCTTCTTCTTCTTATCGGAGGCGTCTTTGGGAAGCTTCTTCTCGGCTCTCGGCTTCTTCTCCGCCGGAGCCTTCTCGGCCTTCTTCTCCTCCGCCGCTGGCTTCTTCTCGGCGGGCTTCTTCTCAGCCTTTGGCGCCATTGTTAAGTTTACAGAGGGATTTGGAGATTTCTCTGAGATGGAATTGGCAAGGGAGCAAAGATTGAGTTCTGAGAAGAGAGTTGAGGGGATTGATATTTATGGATGGAGACGGCGCTATGTGATTGGCTGGTTCTGCTTTCACGCGGATAGCTGA

mRNA sequence

ATGGGAAACAATTCTCTAACGTGTTGTACAATGGACTCTCAGGATTTCACCGATGGACACCTTTCCCCACCCGTCAACCAACTCAGGCTGAGTTCAAGATTAATGCCTTATGGGTTTGACACCAAACTCCCCAAACGGAAGATGCCAAACTCAGCGTGCACTATTCCAAAATGTGCAACAAAAGGCAAAGAAATCAACAATTCAGAACAGTCATGCTGCTTTTTACACGAGAACCCCCTAACATCTATGAATCTAAGAGCTAGTAAACTTGGTAACAGCCTTTGTACCCTCAGAGACGGCGTGCTTGGCCAACTCACCAGGAAGAACAAGGCGTACCGCCGTTTGGATCTCCCGAGAGGTGATGGTCGGCTTCTTCTTCTCGAAAATGTCGTTGATGAAACTGTTCATAATCCCCATGGCTTTGCTGGAGATTCCAATGTCGGGATGGACTTGCTTGAGCACCTTGAAGATGTAGATCTTGCGTCTTTGGGAAGCTTCTTCTCGGCTCTCGGCTTCTTCTCCGCCGGAGCCTTCTCGGCCTTCTTCTCCTCCGCCGCTGGCTTCTTCTCGGCGGGCTTCTTCTCAGCCTTTGGCGCCATTGTTAAGTTTACAGAGGGATTTGGAGATTTCTCTGAGATGGAATTGGCAAGGGAGCAAAGATTGAGTTCTGAGAAGAGAGTTGAGGGGATTGATATTTATGGATGGAGACGGCGCTATGTGATTGGCTGGTTCTGCTTTCACGCGGATAGCTGA

Coding sequence (CDS)

ATGGGAAACAATTCTCTAACGTGTTGTACAATGGACTCTCAGGATTTCACCGATGGACACCTTTCCCCACCCGTCAACCAACTCAGGCTGAGTTCAAGATTAATGCCTTATGGGTTTGACACCAAACTCCCCAAACGGAAGATGCCAAACTCAGCGTGCACTATTCCAAAATGTGCAACAAAAGGCAAAGAAATCAACAATTCAGAACAGTCATGCTGCTTTTTACACGAGAACCCCCTAACATCTATGAATCTAAGAGCTAGTAAACTTGGTAACAGCCTTTGTACCCTCAGAGACGGCGTGCTTGGCCAACTCACCAGGAAGAACAAGGCGTACCGCCGTTTGGATCTCCCGAGAGGTGATGGTCGGCTTCTTCTTCTCGAAAATGTCGTTGATGAAACTGTTCATAATCCCCATGGCTTTGCTGGAGATTCCAATGTCGGGATGGACTTGCTTGAGCACCTTGAAGATGTAGATCTTGCGTCTTTGGGAAGCTTCTTCTCGGCTCTCGGCTTCTTCTCCGCCGGAGCCTTCTCGGCCTTCTTCTCCTCCGCCGCTGGCTTCTTCTCGGCGGGCTTCTTCTCAGCCTTTGGCGCCATTGTTAAGTTTACAGAGGGATTTGGAGATTTCTCTGAGATGGAATTGGCAAGGGAGCAAAGATTGAGTTCTGAGAAGAGAGTTGAGGGGATTGATATTTATGGATGGAGACGGCGCTATGTGATTGGCTGGTTCTGCTTTCACGCGGATAGCTGA

Protein sequence

MGNNSLTCCTMDSQDFTDGHLSPPVNQLRLSSRLMPYGFDTKLPKRKMPNSACTIPKCATKGKEINNSEQSCCFLHENPLTSMNLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLLLLENVVDETVHNPHGFAGDSNVGMDLLEHLEDVDLASLGSFFSALGFFSAGAFSAFFSSAAGFFSAGFFSAFGAIVKFTEGFGDFSEMELAREQRLSSEKRVEGIDIYGWRRRYVIGWFCFHADS

Homology

[Close]

BLAST of CaUC01G012650 vs. NCBI nr
Match: KAE8688710.1 (hypothetical protein F3Y22_tig00110956pilonHSYRG00055 [Hibiscus syriacus])

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-21
Identity = 73/144 (50.69%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 84  NLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL------------LLENVV 143
           NLR SKLGNSL   R  VL QL R+N+   RL+LPR D RLL            LLENVV
Sbjct: 194 NLRTSKLGNSLSAFRHSVLSQLPRQNQPDGRLNLPRRDCRLLVVTSEPGSFISKLLENVV 253

Query: 144 DETVHNPHGFAGDSNVGMDLLEHLEDVDLA---------------SLGSFFSALGFFSAG 201
           DET+HNPHG   + ++ ++LL++LED+DL                SLGSFFSAL FFS  
Sbjct: 254 DETIHNPHGLTRNPHIRVNLLQNLEDIDLVGFHALLGSLLLLSPPSLGSFFSALSFFS-- 313

[Close]

BLAST of CaUC01G012650 vs. NCBI nr
Match: ACU13433.1 (unknown, partial [Glycine max])

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-18
Identity = 57/108 (52.78%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 75  LHENPLTSMNLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL--------- 134
           L  N LT+ N RA KLGN L   R+GV GQ TR+++ +  LDLPRGDG LL         
Sbjct: 32  LQHNRLTNPNSRAGKLGNRLGPFRNGVFGQFTREHETHGGLDLPRGDGGLLVVASQTRRF 91

Query: 135 ---LLENVVDETVHNPHGFAGDSNVGMDLLEHLEDVDLASLGSFFSAL 171
              LLE+VVDE VH+ HG AG++NVG++LLE LEDVDL  L +   AL
Sbjct: 92  LGELLEDVVDEAVHDAHGLAGNTNVGVNLLEDLEDVDLVGLHALLRAL 139

[Close]

BLAST of CaUC01G012650 vs. NCBI nr
Match: KAG6629253.1 (hypothetical protein CIPAW_14G071700 [Carya illinoinensis])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-17
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 86  RASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL------------LLENVVDE 145
           RASKLG+ L  LR+GVLG+ TR+++ +R LDLPRGDG LL            LL++V+DE
Sbjct: 38  RASKLGDRLGPLRNGVLGEFTRQHETHRGLDLPRGDGGLLVIPREPGSLLGELLKDVIDE 97

Query: 146 TVHNPHGFAGDSNVGMDLLEHLEDVDLASLGSFFSALGFFSAGAFSAF 182
            VH+PHG AGD ++G++L +HLEDVDL  L +    L     GA SAF
Sbjct: 98  AVHDPHGLAGDPDIGVNLFKHLEDVDLVGLNTLLGPLLLLVRGAGSAF 145

[Close]

BLAST of CaUC01G012650 vs. NCBI nr
Match: EMS46482.1 (hypothetical protein TRIUR3_19478 [Triticum urartu])

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-16
Identity = 72/154 (46.75%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 84  NLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL------------LLENVV 143
           +L   +LGN L  L DGVLG+L R+++A   LDLP GDG LL            LLE+VV
Sbjct: 31  SLGGGELGNGLGALGDGVLGELAREDEADGGLDLPGGDGGLLVVPRQLGRLPGELLEDVV 90

Query: 144 DETVHNPHGFAGDSNVGMDLLEHLEDVDLASL----------------GSFFSALGFFSA 203
           DE VH+ HG  GD++VG+ LLEHLEDVDL  L                G  FSAL FF+ 
Sbjct: 91  DEGVHDGHGLGGDADVGVHLLEHLEDVDLVRLHALLGLLLPLLLASAAGGRFSALVFFAV 150

Query: 204 GAFSAFFSSAAGFFSAGFFSAFGAIVKFTEGFGD 210
             FSAF  SA GFFSA    A GA    +  +GD
Sbjct: 151 VVFSAF--SATGFFSA--LGAMGAEADDSRVWGD 180

[Close]

BLAST of CaUC01G012650 vs. NCBI nr
Match: KAA8520023.1 (hypothetical protein F0562_014303 [Nyssa sinensis])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 67/146 (45.89%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 80  LTSMNLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL------------LL 139
           L  ++ RA KL +SL  LR  V GQ TRKNK +  LDL R DGRLL            L 
Sbjct: 122 LNYVHSRACKLRHSLRPLRHSVHGQFTRKNKPHGCLDLQRSDGRLLVVPCELGGLLSELF 181

Query: 140 ENVVDETVHNPHGFAGDSNVGMDLLEHLEDVDLASLGSFFSALGFFS------------- 195
           E+VVDE VH+PH   GD +V +DL +HLED+DL SL + F  L   +             
Sbjct: 182 EDVVDEAVHDPHSLVGDPDVRVDLFQHLEDIDLISLDALFDPLLLVTNDGSSLLRQLLPG 241

[Close]

BLAST of CaUC01G012650 vs. ExPASy TrEMBL
Match: A0A6A2ZB53 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110956pilonHSYRG00055 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 73/144 (50.69%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 84  NLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL------------LLENVV 143
           NLR SKLGNSL   R  VL QL R+N+   RL+LPR D RLL            LLENVV
Sbjct: 194 NLRTSKLGNSLSAFRHSVLSQLPRQNQPDGRLNLPRRDCRLLVVTSEPGSFISKLLENVV 253

Query: 144 DETVHNPHGFAGDSNVGMDLLEHLEDVDLA---------------SLGSFFSALGFFSAG 201
           DET+HNPHG   + ++ ++LL++LED+DL                SLGSFFSAL FFS  
Sbjct: 254 DETIHNPHGLTRNPHIRVNLLQNLEDIDLVGFHALLGSLLLLSPPSLGSFFSALSFFS-- 313

[Close]

BLAST of CaUC01G012650 vs. ExPASy TrEMBL
Match: A0A452YPV8 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 76/154 (49.35%), Postives = 90/154 (58.44%), Query Frame = 0


Query: 84  NLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLLL------------LENVV 143
           NLR  +LG+ L  L DGVLG+L  +++A   LDL  GDG LL+            LE+VV
Sbjct: 1   NLRGGELGDGLGALGDGVLGELPGEDEADGGLDLTGGDGGLLVVAGELGDLPGEFLEDVV 60

Query: 144 DETVHNPHGFAGDSNVGMDLLEHLEDVDLASL------------------------GSFF 199
           DE VH+ HG  GD++VG+ LLEHLEDVDL  L                        GS F
Sbjct: 61  DEGVHDGHGLGGDADVGVHLLEHLEDVDLVGLDALLALLPGPLFSLPPSLEAVLPAGSRF 120

[Close]

BLAST of CaUC01G012650 vs. ExPASy TrEMBL
Match: A0A0E0BX84 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 73/150 (48.67%), Postives = 90/150 (60.00%), Query Frame = 0


Query: 76   HENPLTSMNLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLLLLENVVDETV 135
            H N   + +L  S+LG+ L  L DGVLG+L  +++A    +L    G   LLE+VVDE V
Sbjct: 1064 HTNKHKAYSLGGSELGDGLGALGDGVLGELAWEDEADGAGELGGLPGE--LLEDVVDEGV 1123

Query: 136  HNPHGFAGDSNVGMDLLEHLEDVDLAS----------------------LGSFFSALGFF 195
            H+ HG  GD++VG+DLLEHLEDVDL S                       G  FSALGFF
Sbjct: 1124 HDGHGLGGDADVGVDLLEHLEDVDLVSTLFFPFFRPAFFPSPLPFSALPAGRRFSALGFF 1183

Query: 196  SAGAFSAFF---SSAAGFFSAGFFSAFGAI 201
             AGAFSAF    SS+AGFF+AGFFSA GA+
Sbjct: 1184 PAGAFSAFSAAGSSSAGFFAAGFFSALGAM 1211

[Close]

BLAST of CaUC01G012650 vs. ExPASy TrEMBL
Match: C6SW10 (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 57/108 (52.78%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 75  LHENPLTSMNLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL--------- 134
           L  N LT+ N RA KLGN L   R+GV GQ TR+++ +  LDLPRGDG LL         
Sbjct: 32  LQHNRLTNPNSRAGKLGNRLGPFRNGVFGQFTREHETHGGLDLPRGDGGLLVVASQTRRF 91

Query: 135 ---LLENVVDETVHNPHGFAGDSNVGMDLLEHLEDVDLASLGSFFSAL 171
              LLE+VVDE VH+ HG AG++NVG++LLE LEDVDL  L +   AL
Sbjct: 92  LGELLEDVVDEAVHDAHGLAGNTNVGVNLLEDLEDVDLVGLHALLRAL 139

[Close]

BLAST of CaUC01G012650 vs. ExPASy TrEMBL
Match: M7YH21 (Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_19478 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 72/154 (46.75%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 84  NLRASKLGNSLCTLRDGVLGQLTRKNKAYRRLDLPRGDGRLL------------LLENVV 143
           +L   +LGN L  L DGVLG+L R+++A   LDLP GDG LL            LLE+VV
Sbjct: 31  SLGGGELGNGLGALGDGVLGELAREDEADGGLDLPGGDGGLLVVPRQLGRLPGELLEDVV 90

Query: 144 DETVHNPHGFAGDSNVGMDLLEHLEDVDLASL----------------GSFFSALGFFSA 203
           DE VH+ HG  GD++VG+ LLEHLEDVDL  L                G  FSAL FF+ 
Sbjct: 91  DEGVHDGHGLGGDADVGVHLLEHLEDVDLVRLHALLGLLLPLLLASAAGGRFSALVFFAV 150

Query: 204 GAFSAFFSSAAGFFSAGFFSAFGAIVKFTEGFGD 210
             FSAF  SA GFFSA    A GA    +  +GD
Sbjct: 151 VVFSAF--SATGFFSA--LGAMGAEADDSRVWGD 180

The following BLAST results are available for this feature:

BLAST of CaUC01G012650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8688710.1	3.2e-21	50.69	hypothetical protein F3Y22_tig00110956pilonHSYRG00055 [Hibiscus syriacus]	[more]
ACU13433.1	4.3e-18	52.78	unknown, partial [Glycine max]	[more]
KAG6629253.1	1.6e-17	50.93	hypothetical protein CIPAW_14G071700 [Carya illinoinensis]	[more]
EMS46482.1	3.1e-16	46.75	hypothetical protein TRIUR3_19478 [Triticum urartu]	[more]
KAA8520023.1	1.2e-15	45.89	hypothetical protein F0562_014303 [Nyssa sinensis]	[more]

BLAST of CaUC01G012650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC01G012650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2ZB53	1.5e-21	50.69	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110956pilon...	[more]
A0A452YPV8	2.9e-20	49.35	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A0E0BX84	1.2e-18	48.67	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=3 SV=1	[more]
C6SW10	2.1e-18	52.78	Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
M7YH21	1.5e-16	46.75	Uncharacterized protein OS=Triticum urartu OX=4572 GN=TRIUR3_19478 PE=4 SV=1	[more]

BLAST of CaUC01G012650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47625	FAMILY NOT NAMED	coord: 80..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G012650.1	CaUC01G012650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity