CaUC01G012590 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G012590
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cyclin-dependent kinases regulatory subunit
Location	Ciama_Chr01: 24638985 .. 24639823 (+)
RNA-Seq Expression	CaUC01G012590
Synteny	CaUC01G012590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTGCTCCCTTTCCCGAATTCAAAGCACTATTTTAACTTCTTCTCACTTTTCTTTTTCTTCTTCACCGCTCCTCCAAGGTCTTCGATTCTTCTTCTCCCAACTCTTTCTCTAAAGATTTCGCTTTCATTTTCGAATCCATTTCTCTAATCTTGTTCTATTTTTCTTCAGATCGAACAAGCCCTAGCCATTTTTCTGTCTCTAATTCGTTGCGATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGTCAGTAATTTCTCTTCCTCCTCTGTTTTTCGATTCAGGATGATTCTATGCTCTGGATTTGTTCATCGGCATGGTTTGATTCTCATGTTTGTTGTAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAGTAAGTATTTCACGATTCTCCTCTATATCATAATTTCTTGTGTTGAATCCTGTTCCGGTGATCAGTAGTGAAATGAAATAGATATCTCTCATAATCATCGGTTGCTTTTCCTCTGATTGATAAGTGTGATAGAATCTGAATACTTGAGATCTGTGTAATTTGATTATGTGATGATGGACAGAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGATAGGTTTATTATTCTTTTTCTTCTCTAGATATACTATATTTTGTTTAGAACACTAATGAGAAATATCTCACTACAAATCC

mRNA sequence

TATTTGCTCCCTTTCCCGAATTCAAAGCACTATTTTAACTTCTTCTCACTTTTCTTTTTCTTCTTCACCGCTCCTCCAAGATCGAACAAGCCCTAGCCATTTTTCTGTCTCTAATTCGTTGCGATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGATAGGTTTATTATTCTTTTTCTTCTCTAGATATACTATATTTTGTTTAGAACACTAATGAGAAATATCTCACTACAAATCC

Coding sequence (CDS)

ATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQIMAK

Homology

[Close]

BLAST of CaUC01G012590 vs. NCBI nr
Match: XP_038894383.1 (cyclin-dependent kinases regulatory subunit 1 [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CaUC01G012590 vs. NCBI nr
Match: XP_010267303.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_010267305.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_010267306.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera])

HSP 1 Score: 179.9 bits (455), Expect = 9.7e-42
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]

BLAST of CaUC01G012590 vs. NCBI nr
Match: XP_011654109.1 (cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X2 [Cucumis melo] >KGN64861.1 hypothetical protein Csa_022815 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 9.7e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CaUC01G012590 vs. NCBI nr
Match: XP_042489972.1 (cyclin-dependent kinases regulatory subunit 1-like [Macadamia integrifolia])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLN+QQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNFQQQQENQAQQQILAK 88

[Close]

BLAST of CaUC01G012590 vs. NCBI nr
Match: KAF3455154.1 (hypothetical protein FNV43_RR05602 [Rhamnella rubrinervis])

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIM 87
          EPHIMLFRRPLNYQQQQENQAQQQ M
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQTM 86

[Close]

BLAST of CaUC01G012590 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.7e-42
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIM 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of CaUC01G012590 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.3e-40
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of CaUC01G012590 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.3e-40
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of CaUC01G012590 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-37
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of CaUC01G012590 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-28
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 4  IQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+LPP+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of CaUC01G012590 vs. ExPASy TrEMBL
Match: A0A1U8AJ97 (Cyclin-dependent kinases regulatory subunit OS=Nelumbo nucifera OX=4432 GN=LOC104604585 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.7e-42
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]

BLAST of CaUC01G012590 vs. ExPASy TrEMBL
Match: A0A0A0LY04 (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.7e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CaUC01G012590 vs. ExPASy TrEMBL
Match: A0A1S4E4W6 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.7e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CaUC01G012590 vs. ExPASy TrEMBL
Match: A0A6J1I3M7 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111469347 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CaUC01G012590 vs. ExPASy TrEMBL
Match: A0A6J1HM34 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111464859 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CaUC01G012590 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 170.6 bits (431), Expect = 5.5e-43
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIM 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of CaUC01G012590 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 156.8 bits (395), Expect = 8.2e-39
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

The following BLAST results are available for this feature:

BLAST of CaUC01G012590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894383.1	1.2e-42	98.86	cyclin-dependent kinases regulatory subunit 1 [Benincasa hispida]	[more]
XP_010267303.1	9.7e-42	96.59	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_...	[more]
XP_011654109.1	9.7e-42	97.73	cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 ...	[more]
XP_042489972.1	1.3e-41	96.59	cyclin-dependent kinases regulatory subunit 1-like [Macadamia integrifolia]	[more]
KAF3455154.1	2.2e-41	98.84	hypothetical protein FNV43_RR05602 [Rhamnella rubrinervis]	[more]

BLAST of CaUC01G012590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	7.7e-42	91.86	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	7.3e-40	95.06	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	7.3e-40	95.06	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	1.2e-37	88.75	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	3.7e-28	80.30	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of CaUC01G012590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U8AJ97	4.7e-42	96.59	Cyclin-dependent kinases regulatory subunit OS=Nelumbo nucifera OX=4432 GN=LOC10...	[more]
A0A0A0LY04	4.7e-42	97.73	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A1S4E4W6	4.7e-42	97.73	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A6J1I3M7	1.1e-41	96.59	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1HM34	1.1e-41	96.59	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CaUC01G012590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27960.1	5.5e-43	91.86	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	8.2e-39	88.75	CDK-subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 75.9 coord: 18..32 score: 62.05 coord: 3..17 score: 64.1 coord: 55..69 score: 76.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 1.9E-46 score: 170.3
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 2.2E-35 score: 120.7
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..84 e-value: 7.2E-40 score: 137.3
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 1..83
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..87
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G012590.1	CaUC01G012590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity