CaUC01G012490 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G012490
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR2
Location	Ciama_Chr01: 24413040 .. 24413372 (+)
RNA-Seq Expression	CaUC01G012490
Synteny	CaUC01G012490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTATTAGAAACCCCAAAGCCACTGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGTCGATGAAGCGCTTCCGGCGGCAGCGGATGGTGACGAAGAGAGCTGTCGAACTCCGACATCTCTTCGACATCGAATTCCGACAGCACGAAGCTGCCCGACGACGCCGAGAAAGCGGAAAGTCGTGAGCAAGAGGAAATTTTCAGACCAAAGCTTCTTTGAGGCCACCGGAAGGGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCCTCTTCCAAACGAAGATGTACAAGTGTATAA

mRNA sequence

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTATTAGAAACCCCAAAGCCACTGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGTCGATGAAGCGCTTCCGGCGGCAGCGGATGGTGACGAAGAGAGCTGTCGAACTCCGACATCTCTTCGACATCGAATTCCGACAGCACGAAGCTGCCCGACGACGCCGAGAAAGCGGAAAGTCGTGAGCAAGAGGAAATTTTCAGACCAAAGCTTCTTTGAGGCCACCGGAAGGGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCCTCTTCCAAACGAAGATGTACAAGTGTATAA

Coding sequence (CDS)

ATGTCTCAATTTCACAAATCCGATCACCAAAAGGTATTAGAAACCCCAAAGCCACTGGAAGAAGGTGATCGGAGCAAGGAGGAAGACGTCGATGAAGCGCTTCCGGCGGCAGCGGATGGTGACGAAGAGAGCTGTCGAACTCCGACATCTCTTCGACATCGAATTCCGACAGCACGAAGCTGCCCGACGACGCCGAGAAAGCGGAAAGTCGTGAGCAAGAGGAAATTTTCAGACCAAAGCTTCTTTGAGGCCACCGGAAGGGGAGAGGTAGAATCCTTGTTTGGCTTATTTTATAGGGTTTCCTCTTCCAAACGAAGATGTACAAGTGTATAA

Protein sequence

MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKRKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV

Homology

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BLAST of CaUC01G012490 vs. NCBI nr
Match: KAA0052125.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98071.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-38
Identity = 89/110 (80.91%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
           MSQ HKSD +KVLETPK LE GDRS EE   EAL AA D + ESCRTPTSLRHRIP A+S
Sbjct: 1   MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61  CPTTPRKRKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 111
           CPTTPRK++V  KRK SDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV
Sbjct: 61  CPTTPRKQRVARKRKISDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 110

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BLAST of CaUC01G012490 vs. NCBI nr
Match: KAG6586014.1 (hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037379.1 hypothetical protein SDJN02_01004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.7 bits (413), Expect = 9.0e-37
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
           MS+F  SDHQK LE  KP EE DRSKEED  EAL A  DG  ESCRTP+SL+HRIP ARS
Sbjct: 1   MSEFQNSDHQKSLEPQKPAEEVDRSKEEDGGEALLAVEDGGGESCRTPSSLKHRIPAARS 60

Query: 61  CPTTPRKRKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 111
           CPTTPRK+KVVSKRKFSDQSFFE+T R EVESLFGLFYRVSS KRRCTS+
Sbjct: 61  CPTTPRKKKVVSKRKFSDQSFFESTRREEVESLFGLFYRVSSGKRRCTSI 110

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BLAST of CaUC01G012490 vs. NCBI nr
Match: KAG6583595.1 (hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.4 bits (407), Expect = 4.5e-36
Identity = 88/110 (80.00%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
           MSQFHKSDHQKV E PKP EEGDRSKEED       A D   ESCRTPTSLRHRIPTARS
Sbjct: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEED---GGGEAVDCGGESCRTPTSLRHRIPTARS 60

Query: 61  CPTTPRKRKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 111
            PTTPRKRKV SKRKFSDQSFFE TGRGEVESLF LFYRVSS+KRR T++
Sbjct: 61  YPTTPRKRKVASKRKFSDQSFFEVTGRGEVESLFALFYRVSSAKRRFTNI 107

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BLAST of CaUC01G012490 vs. NCBI nr
Match: KAG7019295.1 (hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 4.5e-36
Identity = 87/110 (79.09%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
           MSQFHKSDHQKV E PKP EEGDRSKEED       A D   ESCRTPTSLRHRIPTARS
Sbjct: 1   MSQFHKSDHQKVKEPPKPPEEGDRSKEED---GGGEAVDCSGESCRTPTSLRHRIPTARS 60

Query: 61  CPTTPRKRKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 111
            PTTPRKRK+ SKRKFSDQSFFE TGRGEVESLF LFYRVSS+KRR T++
Sbjct: 61  YPTTPRKRKIASKRKFSDQSFFEVTGRGEVESLFALFYRVSSAKRRFTNI 107

[Close]

BLAST of CaUC01G012490 vs. NCBI nr
Match: KAE8652786.1 (hypothetical protein Csa_022878 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 9.4e-26
Identity = 67/90 (74.44%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
          MSQFHKSD QKVLE P+  E GDRS EE   EAL AA   D ESCRTPTS +HRIP A+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGEV 91
          CPTTPRK++VV KRKFSDQSFFEATGRGE+
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGEI 90

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BLAST of CaUC01G012490 vs. ExPASy Swiss-Prot
Match: Q9SGE2 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana OX=3702 GN=SMR2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.7e-04
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 11 KVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKR-- 70
          + LE  K +E+  RS+EE+ D    +  +   ES  TPTS  H+IP   +CP  PRKR  
Sbjct: 6  ETLEEEKTVEQKPRSQEEE-DHQDSSKKEELLESLCTPTSSDHKIPEVETCPPPPRKRPR 65

Query: 71 --KVVSKRKFS-DQSFFEAT--GRGEVESLF 95
             +  K + S D  FFEAT  G  EVE+LF
Sbjct: 66 EISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

[Close]

BLAST of CaUC01G012490 vs. ExPASy TrEMBL
Match: A0A5D3BHE9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00010 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.0e-39
Identity = 89/110 (80.91%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
           MSQ HKSD +KVLETPK LE GDRS EE   EAL AA D + ESCRTPTSLRHRIP A+S
Sbjct: 1   MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61  CPTTPRKRKVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 111
           CPTTPRK++V  KRK SDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV
Sbjct: 61  CPTTPRKQRVARKRKISDQSFFEATGRGEVESLFGLFYRVSSSKRRCTSV 110

[Close]

BLAST of CaUC01G012490 vs. ExPASy TrEMBL
Match: A0A0A0LV74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
          MSQFHKSD QKVLE P+  E GDRS EE   EAL AA   D ESCRTPTS +HRIP A+S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK++VV KRKFSDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of CaUC01G012490 vs. ExPASy TrEMBL
Match: A0A7N2QXB7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.8e-10
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 39  DGDEESCRTPTSLRHRIPTARSCPTTPRK--RKVVSKRKFSDQSFFEATGRGEVESLFGL 98
           D DEE CRTPTS  H+IP  +SCP TPRK  R  V KRK++D  FFE T R E+ES F  
Sbjct: 27  DDDEEGCRTPTSPDHKIPATQSCPPTPRKPARVSVHKRKWTDLKFFENTRREELESFFQS 86

Query: 99  FY---RVSSS--KRRCTSV 111
            +   RV+S   KRRCTSV
Sbjct: 87  SFKSPRVTSHAVKRRCTSV 105

[Close]

BLAST of CaUC01G012490 vs. ExPASy TrEMBL
Match: A0A6J5XJV3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS36167 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 1   MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
           +S FH  DHQ   + P+ LEE D + E  + +        + + CRTPTS  H+IPT +S
Sbjct: 14  LSIFH--DHQ---QPPQGLEEKDDNSEPIIRK--------EADDCRTPTSRDHKIPTIQS 73

Query: 61  CPTTPRKR--KVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSS--KRRCTSV 111
           CPTTPRK+    V KRK +   FFE+TGR EVES F   +   S   K+RCTS+
Sbjct: 74  CPTTPRKKGQAFVRKRKLAVFDFFESTGREEVESFFRSCFESLSPRVKKRCTSI 114

[Close]

BLAST of CaUC01G012490 vs. ExPASy TrEMBL
Match: A0A6J5V1P1 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS36551 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 1   MSQFHKSDHQKVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARS 60
           +S FH  DHQ   + P+ LEE D + E  + +        + + CRTPTS  H+IPT +S
Sbjct: 14  LSIFH--DHQ---QPPQGLEEKDDNSEPIIRK--------EADDCRTPTSRDHKIPTIQS 73

Query: 61  CPTTPRKR--KVVSKRKFSDQSFFEATGRGEVESLFGLFYRVSSS--KRRCTSV 111
           CPTTPRK+    V KRK +   FFE+TGR EVES F   +   S   K+RCTS+
Sbjct: 74  CPTTPRKKGQAFVRKRKLAVFDFFESTGREEVESFFRSCFESLSPRVKKRCTSI 114

[Close]

BLAST of CaUC01G012490 vs. TAIR 10
Match: AT1G08180.1 (unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 11 KVLETPKPLEEGDRSKEEDVDEALPAAADGDEESCRTPTSLRHRIPTARSCPTTPRKR-- 70
          + LE  K +E+  RS+EE+ D    +  +   ES  TPTS  H+IP   +CP  PRKR  
Sbjct: 6  ETLEEEKTVEQKPRSQEEE-DHQDSSKKEELLESLCTPTSSDHKIPEVETCPPPPRKRPR 65

Query: 71 --KVVSKRKFS-DQSFFEAT--GRGEVESLF 95
             +  K + S D  FFEAT  G  EVE+LF
Sbjct: 66 EISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

The following BLAST results are available for this feature:

BLAST of CaUC01G012490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052125.1	1.6e-38	80.91	cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98...	[more]
KAG6586014.1	9.0e-37	78.18	hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6583595.1	4.5e-36	80.00	hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019295.1	4.5e-36	79.09	hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8652786.1	9.4e-26	74.44	hypothetical protein Csa_022878 [Cucumis sativus]	[more]

BLAST of CaUC01G012490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGE2	4.7e-04	41.76	Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CaUC01G012490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHE9	8.0e-39	80.91	Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0LV74	1.3e-25	75.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1	[more]
A0A7N2QXB7	7.8e-10	56.96	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J5XJV3	1.7e-09	44.74	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS36167 PE=...	[more]
A0A6J5V1P1	1.7e-09	44.74	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS36551 PE=4 S...	[more]

BLAST of CaUC01G012490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08180.1	3.3e-05	41.76	unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33142:SF13	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKE	coord: 7..109
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 7..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G012490.1	CaUC01G012490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication