CaUC01G011570 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G011570
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCiama_Chr01: 19369581 .. 19371158 (-)
RNA-Seq ExpressionCaUC01G011570
SyntenyCaUC01G011570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGCATTCCTTCTCACACCGCCATTCCATCACAACTCCAACAATATCCCAATCCGCCTTCTCCAATCCCACTTTCAAATCCAACAAACCTCAACTTCCCCCGCTCTCCCAATTCCTCACATCACAATATCTCCTCCAAATTCACCGCCAATTCTATTGACCCCATTGTTCAATGGACCTCCTCTCTTGCTCGCTACTGCCGCAATGGCCAATTATCCGAAGCCGCCGCAGAGTTTACACGCATGAGACTCGCCGGAGTTGAGCCAAACCACGTCACATTCATTACCCTTCTCTCCGGCTGTGCTGATTTTCCATCAGAAAGCCTCTTCTTCGGCTCTTCCCTTCATGGCTACGCCCGTAAATTTGGCTTGGATACATGGCATGTAATGGTGGGGACCGCTTTGATTGATATGTATGCCAAATGTGCTCAATTGGGTCTTGCTAGGAAAGTTTTTGATTACCTAGGCGTGAAGAACTCTGTCTCTTGGAACACGATGCTCGATGGTTACACAAGGAATGGAGAGATTGAATTGGCACTTGACCTGTTTGATGAAATGCCTACAAGAGATGCGATTTCTTGGACGGCTTTGATTAACGGTCTCTTGAAACATGGGTACTCTGAACAAGCATTGGAGTGCTTCCATCAGATGCAATGCTCCGGTATCGAGCCTGATTATGTGTCTATAATTGCTGTTCTCGCTGCGTGTGCTGATTTGGGCGCGCTTACTTTAGGGTTATGGGTTAATAGGTTTGTTATGCAGCAGGAGTTTAAGGATAATATTAGGATAAGTAATTCCTTGATTGATATGTATTCTCGATGTGGATGTATTGAGTTTGCCCGCCAAGTGTTTGAGAAAATGCCCAAGCGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGATTTGCTGATGAATCTCTGGAGTTCTTTGATGCAATGCAGAAGGAAGGATTCAAGCCAGATGGAGTAAGCTACACGGGAGCTCTTACTGCATGTAGCCATGCTGGCTTAGTGAATAAGGGCCTCGAATTGTTTGATAACATGAAGAGGGTACACAGAGTTACTCCCAGGATTGAGCATTATGGATGTATTGTCGACCTCTATGGTCGTGCAGGGAGGTTAGAGGATGCATTGAATGTGATTGAGGAAATGCCGATGAAACCGAATGAAGTTGTGTTGGGGTCGTTGTTGGCTGCCTGCAGGACTCATGGTGATGTGAGCATGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTGGATCCAGGAGGCGATTCAAATTATGTGCTTCTTTCAAACATATATGCAGCAATTGGAAAGTGGGAAGGTGCTAACAAGGTTAGGCGAACGATGAAAGCTCGAGGCGTGCAGAAAAAACCGGGTTGTAGTTCTGTTGAAATTGATGGTAAGGTTCATGAGTTTGTTGCTGGTGACAAATACCATACTGATGCAGACAGTATTTACTCAATGTTGGAGCTGTTGTTTCATGAACTAAAGATATGTGGCTATGTTCCTGATACTGATATCATTATGAATACCAAAGAATCTAGTAAAGATAGTTGA

mRNA sequence

ATGAGCAGCATTCCTTCTCACACCGCCATTCCATCACAACTCCAACAATATCCCAATCCGCCTTCTCCAATCCCACTTTCAAATCCAACAAACCTCAACTTCCCCCGCTCTCCCAATTCCTCACATCACAATATCTCCTCCAAATTCACCGCCAATTCTATTGACCCCATTGTTCAATGGACCTCCTCTCTTGCTCGCTACTGCCGCAATGGCCAATTATCCGAAGCCGCCGCAGAGTTTACACGCATGAGACTCGCCGGAGTTGAGCCAAACCACGTCACATTCATTACCCTTCTCTCCGGCTGTGCTGATTTTCCATCAGAAAGCCTCTTCTTCGGCTCTTCCCTTCATGGCTACGCCCGTAAATTTGGCTTGGATACATGGCATGTAATGGTGGGGACCGCTTTGATTGATATGTATGCCAAATGTGCTCAATTGGGTCTTGCTAGGAAAGTTTTTGATTACCTAGGCGTGAAGAACTCTGTCTCTTGGAACACGATGCTCGATGGTTACACAAGGAATGGAGAGATTGAATTGGCACTTGACCTGTTTGATGAAATGCCTACAAGAGATGCGATTTCTTGGACGGCTTTGATTAACGGTCTCTTGAAACATGGGTACTCTGAACAAGCATTGGAGTGCTTCCATCAGATGCAATGCTCCGGTATCGAGCCTGATTATGTGTCTATAATTGCTGTTCTCGCTGCGTGTGCTGATTTGGGCGCGCTTACTTTAGGGTTATGGGTTAATAGGTTTGTTATGCAGCAGGAGTTTAAGGATAATATTAGGATAAGTAATTCCTTGATTGATATGTATTCTCGATGTGGATGTATTGAGTTTGCCCGCCAAGTGTTTGAGAAAATGCCCAAGCGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGATTTGCTGATGAATCTCTGGAGTTCTTTGATGCAATGCAGAAGGAAGGATTCAAGCCAGATGGAGTAAGCTACACGGGAGCTCTTACTGCATGTAGCCATGCTGGCTTAGTGAATAAGGGCCTCGAATTGTTTGATAACATGAAGAGGGTACACAGAGTTACTCCCAGGATTGAGCATTATGGATGTATTGTCGACCTCTATGGTCGTGCAGGGAGGTTAGAGGATGCATTGAATGTGATTGAGGAAATGCCGATGAAACCGAATGAAGTTGTGTTGGGGTCGTTGTTGGCTGCCTGCAGGACTCATGGTGATGTGAGCATGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTGGATCCAGGAGGCGATTCAAATTATGTGCTTCTTTCAAACATATATGCAGCAATTGGAAAGTGGGAAGGTGCTAACAAGGTTAGGCGAACGATGAAAGCTCGAGGCGTGCAGAAAAAACCGGGTTGTAGTTCTGTTGAAATTGATGGTAAGGTTCATGAGTTTGTTGCTGGTGACAAATACCATACTGATGCAGACAGTATTTACTCAATGTTGGAGCTGTTGTTTCATGAACTAAAGATATGTGGCTATGTTCCTGATACTGATATCATTATGAATACCAAAGAATCTAGTAAAGATAGTTGA

Coding sequence (CDS)

ATGAGCAGCATTCCTTCTCACACCGCCATTCCATCACAACTCCAACAATATCCCAATCCGCCTTCTCCAATCCCACTTTCAAATCCAACAAACCTCAACTTCCCCCGCTCTCCCAATTCCTCACATCACAATATCTCCTCCAAATTCACCGCCAATTCTATTGACCCCATTGTTCAATGGACCTCCTCTCTTGCTCGCTACTGCCGCAATGGCCAATTATCCGAAGCCGCCGCAGAGTTTACACGCATGAGACTCGCCGGAGTTGAGCCAAACCACGTCACATTCATTACCCTTCTCTCCGGCTGTGCTGATTTTCCATCAGAAAGCCTCTTCTTCGGCTCTTCCCTTCATGGCTACGCCCGTAAATTTGGCTTGGATACATGGCATGTAATGGTGGGGACCGCTTTGATTGATATGTATGCCAAATGTGCTCAATTGGGTCTTGCTAGGAAAGTTTTTGATTACCTAGGCGTGAAGAACTCTGTCTCTTGGAACACGATGCTCGATGGTTACACAAGGAATGGAGAGATTGAATTGGCACTTGACCTGTTTGATGAAATGCCTACAAGAGATGCGATTTCTTGGACGGCTTTGATTAACGGTCTCTTGAAACATGGGTACTCTGAACAAGCATTGGAGTGCTTCCATCAGATGCAATGCTCCGGTATCGAGCCTGATTATGTGTCTATAATTGCTGTTCTCGCTGCGTGTGCTGATTTGGGCGCGCTTACTTTAGGGTTATGGGTTAATAGGTTTGTTATGCAGCAGGAGTTTAAGGATAATATTAGGATAAGTAATTCCTTGATTGATATGTATTCTCGATGTGGATGTATTGAGTTTGCCCGCCAAGTGTTTGAGAAAATGCCCAAGCGAACTTTGGTATCTTGGAACTCTATCATTGTGGGGTTTGCAGTTAATGGATTTGCTGATGAATCTCTGGAGTTCTTTGATGCAATGCAGAAGGAAGGATTCAAGCCAGATGGAGTAAGCTACACGGGAGCTCTTACTGCATGTAGCCATGCTGGCTTAGTGAATAAGGGCCTCGAATTGTTTGATAACATGAAGAGGGTACACAGAGTTACTCCCAGGATTGAGCATTATGGATGTATTGTCGACCTCTATGGTCGTGCAGGGAGGTTAGAGGATGCATTGAATGTGATTGAGGAAATGCCGATGAAACCGAATGAAGTTGTGTTGGGGTCGTTGTTGGCTGCCTGCAGGACTCATGGTGATGTGAGCATGGCTGAAAGGTTAATGAAACATCTCTTTAAGTTGGATCCAGGAGGCGATTCAAATTATGTGCTTCTTTCAAACATATATGCAGCAATTGGAAAGTGGGAAGGTGCTAACAAGGTTAGGCGAACGATGAAAGCTCGAGGCGTGCAGAAAAAACCGGGTTGTAGTTCTGTTGAAATTGATGGTAAGGTTCATGAGTTTGTTGCTGGTGACAAATACCATACTGATGCAGACAGTATTTACTCAATGTTGGAGCTGTTGTTTCATGAACTAAAGATATGTGGCTATGTTCCTGATACTGATATCATTATGAATACCAAAGAATCTAGTAAAGATAGTTGA

Protein sequence

MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKDS
Homology
BLAST of CaUC01G011570 vs. NCBI nr
Match: XP_038877228.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa hispida])

HSP 1 Score: 1003.8 bits (2594), Expect = 5.4e-289
Identity = 488/524 (93.13%), Postives = 505/524 (96.37%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSS PS+TAIPSQLQQYPNPPS IPLSNPT LNFPRSPNSSH NISSKF ANSIDPIV W
Sbjct: 1   MSSSPSYTAIPSQLQQYPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFPANSIDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSSLARYCRNGQLSEAA EFTRMRLAGVEPNHVTFITLLSGC DFPSESLFFGSSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAATEFTRMRLAGVEPNHVTFITLLSGCTDFPSESLFFGSSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
           RK GLDT HVMVGTAL+DMYAKCAQ  LARKVFDYLG+KNSV+WNTMLDGYTRNGEIELA
Sbjct: 121 RKLGLDTGHVMVGTALVDMYAKCAQSRLARKVFDYLGMKNSVTWNTMLDGYTRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           +DLFDEMPTRDAISWTALINGLLK G+SEQALECFHQMQCSGIEPDYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGFSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALTLGLWVNRFVMQQEFKDNIRISNSL+DMYSRCGCIEFARQVFEKMPKRTLVSWNSII
Sbjct: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLVDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VGFAVNGFADESLEFFDAMQ EGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKR+H++
Sbjct: 301 VGFAVNGFADESLEFFDAMQNEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRIHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
           TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRT+GDVS+AE+LMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTYGDVSLAEKLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HL KLDP GDSNYVLLSNIYAAIG+WEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV
Sbjct: 421 HLSKLDPRGDSNYVLLSNIYAAIGRWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGDKYH DAD+IYSMLELLFHELKI GYVPDT+II+NTKE SKD
Sbjct: 481 AGDKYHADADNIYSMLELLFHELKIYGYVPDTNIILNTKEFSKD 524

BLAST of CaUC01G011570 vs. NCBI nr
Match: XP_022142716.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica charantia])

HSP 1 Score: 957.2 bits (2473), Expect = 5.8e-275
Identity = 466/524 (88.93%), Postives = 492/524 (93.89%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSSIP++TA   QLQQYPNP + IPL NP  +NFPRS NSS+ +ISSK T NSIDPIV W
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSS+ARYCRNGQL+EAAAEFT MRLAGVEPNHVT ITLLSGCADFPSESL+FGSSLHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
           RK GLDT HVMVGT+++DMYAKCAQLGLAR+VFDYL +KNSVSWNTMLDGYTRNGEIELA
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           +DLFDEMPTRDAISWTALINGLLK GYSEQALECFHQMQCSGI+PDYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           G LTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCI FARQVFE+M KRTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VG+A NGFADESLEFFDAMQKEGFKPD VSYTGALTACSHAGLVNKGLELFDNMKRVHR+
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
            PRIEHYGCIVDLYGRAGRLEDAL+VIE+MPMKPNEVVLGSLLAACRTHGDVS+AERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HL KLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGDKYH DADSIYSML+LL HELKICG VP+T+  +NTKESSKD
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKD 524

BLAST of CaUC01G011570 vs. NCBI nr
Match: XP_008458940.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis melo] >KAA0054376.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12413.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 942.6 bits (2435), Expect = 1.5e-270
Identity = 465/524 (88.74%), Postives = 488/524 (93.13%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSSIPSH A PSQLQQ P+  S IPLSNPT +NFPRSP S H NI SKFTANS+ PIVQW
Sbjct: 1   MSSIPSHIASPSQLQQPPS--SSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSS+ARYC NGQL EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPSES FF SSLHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            KFGLDT HVMVGTALIDMY+KC+QLGLA+KVFDYLGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALT GLWVNRFVMQQEFKDN+RISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VGFA NGFADESLEFF AMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVH++
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
           TP IEHYGCIVDLYGRAGRLEDA NVIEEMPMKPNEVVLGSLLAACRTHGDV +AERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           H+FKLD  GDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKK G SSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGDKYH DAD+IYSML+LLFHELK+CGYVPDTDII+NTK+S+KD
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKD 521

BLAST of CaUC01G011570 vs. NCBI nr
Match: XP_004139593.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis sativus])

HSP 1 Score: 941.8 bits (2433), Expect = 2.5e-270
Identity = 462/524 (88.17%), Postives = 485/524 (92.56%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSSIPSHTA PSQLQ  P  PS IPLSNPT LNFPRSPNS H NISSKF  NS+DPIV W
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNH+TFITLLS CADFPSES FF SSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            K+GLDT HVMVGTALIDMY+KCAQLG ARKVF  LGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALTLGLWV+RFVM QEFKDNI+ISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VGFAVNGFADESLEFF AMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK VH++
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
           TPRIEHYGCIVDLYGRAGRLEDALN+IEEMPMKPNEVVLGSLLAACRTHGDV++AERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HLFKLDP GD+ YVLLSNIYAAIGKW+GAN VRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGD YH DAD+IYSML+LL HELK+CGYVP +D I+NTKES+KD
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVPGSDTILNTKESNKD 524

BLAST of CaUC01G011570 vs. NCBI nr
Match: XP_022967078.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita maxima])

HSP 1 Score: 917.9 bits (2371), Expect = 3.9e-263
Identity = 447/526 (84.98%), Postives = 480/526 (91.25%), Query Frame = 0

Query: 1   MSSIPSHTAIP--SQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIV 60
           MSS+PSHT IP   QLQQY NPPSPIP SNP+NL+FPR+PNSS          N I PIV
Sbjct: 1   MSSVPSHTGIPFQFQLQQYSNPPSPIPHSNPSNLSFPRTPNSS----------NPIKPIV 60

Query: 61  QWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHG 120
            WTSS+ARYCRN QL+EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPS SL FG+SLHG
Sbjct: 61  LWTSSIARYCRNAQLAEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHG 120

Query: 121 YARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIE 180
           Y RK GLDT HVMVGTALI MYAKCAQLGLAR VFDYL +KNSV+WNTMLDGY RNGEIE
Sbjct: 121 YVRKLGLDTGHVMVGTALIAMYAKCAQLGLARNVFDYLAMKNSVTWNTMLDGYMRNGEIE 180

Query: 181 LALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACA 240
           LA++LFDEMPTRDAISWTALING LK GYSEQALECFH+MQCSGIEPDYVSIIAVLAACA
Sbjct: 181 LAIELFDEMPTRDAISWTALINGFLKQGYSEQALECFHEMQCSGIEPDYVSIIAVLAACA 240

Query: 241 DLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNS 300
           DLGAL+ GLWVNRF+MQQEFKDNIRISNSLIDMYSRCGCIEFARQVF+KM K TLVSWNS
Sbjct: 241 DLGALSFGLWVNRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMSKHTLVSWNS 300

Query: 301 IIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVH 360
           +IVGFA+NGFADESLEFFDAMQKEGF  DGVSYTGALTACSHAGLVNKGLELFDNMKRVH
Sbjct: 301 MIVGFAINGFADESLEFFDAMQKEGFMADGVSYTGALTACSHAGLVNKGLELFDNMKRVH 360

Query: 361 RVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERL 420
           R+TPRIEHYGCIVDLY RAGRL++ALNVIE MPMKPNEVVLGSLLAACRTHGDVS+AERL
Sbjct: 361 RITPRIEHYGCIVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERL 420

Query: 421 MKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHE 480
           +K+LF+LDPGGDS+YVLLSNIYAA+G+WEGANKVRRTMKARGVQKKPG SS+EIDGKVHE
Sbjct: 421 IKYLFELDPGGDSSYVLLSNIYAAVGRWEGANKVRRTMKARGVQKKPGFSSIEIDGKVHE 480

Query: 481 FVAGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           FVAGDKYH DAD+IYSMLE+LFHELKI GYVP+T   MN  ESSK+
Sbjct: 481 FVAGDKYHVDADNIYSMLEVLFHELKIYGYVPETATFMNGNESSKE 516

BLAST of CaUC01G011570 vs. ExPASy Swiss-Prot
Match: Q9MA50 (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE247 PE=2 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 9.9e-169
Identity = 287/477 (60.17%), Postives = 361/477 (75.68%), Query Frame = 0

Query: 37  SPNSSHHNISSKFTANSIDPIVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFI 96
           +P    HN S+  T       V WTS +    RNG+L+EAA EF+ M LAGVEPNH+TFI
Sbjct: 22  NPKIQRHNQSTSETT------VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFI 81

Query: 97  TLLSGCADFPSESLFFGSSLHGYARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYL 156
            LLSGC DF S S   G  LHGYA K GLD  HVMVGTA+I MY+K  +   AR VFDY+
Sbjct: 82  ALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM 141

Query: 157 GVKNSVSWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFH 216
             KNSV+WNTM+DGY R+G+++ A  +FD+MP RD ISWTA+ING +K GY E+AL  F 
Sbjct: 142 EDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFR 201

Query: 217 QMQCSGIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCG 276
           +MQ SG++PDYV+IIA L AC +LGAL+ GLWV+R+V+ Q+FK+N+R+SNSLID+Y RCG
Sbjct: 202 EMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCG 261

Query: 277 CIEFARQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALT 336
           C+EFARQVF  M KRT+VSWNS+IVGFA NG A ESL +F  MQ++GFKPD V++TGALT
Sbjct: 262 CVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALT 321

Query: 337 ACSHAGLVNKGLELFDNMKRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNE 396
           ACSH GLV +GL  F  MK  +R++PRIEHYGC+VDLY RAGRLEDAL +++ MPMKPNE
Sbjct: 322 ACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNE 381

Query: 397 VVLGSLLAACRTHG-DVSMAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRT 456
           VV+GSLLAAC  HG ++ +AERLMKHL  L+    SNYV+LSN+YAA GKWEGA+K+RR 
Sbjct: 382 VVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRK 441

Query: 457 MKARGVQKKPGCSSVEIDGKVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDT 513
           MK  G++K+PG SS+EID  +H F+AGD  H +   I  +LEL+  +L++ G V +T
Sbjct: 442 MKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492

BLAST of CaUC01G011570 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.6e-108
Identity = 185/461 (40.13%), Postives = 293/461 (63.56%), Query Frame = 0

Query: 65  ARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYARKFG 124
           + Y R G   EA   F  M  +GV P+ ++ ++ +S C+     ++ +G S HGY  + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHGYVLRNG 369

Query: 125 LDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELALDLF 184
            ++W   +  ALIDMY KC +   A ++FD +  K  V+WN+++ GY  NGE++ A + F
Sbjct: 370 FESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 429

Query: 185 DEMPTRDAISWTALINGLLKHGYSEQALECFHQMQC-SGIEPDYVSIIAVLAACADLGAL 244
           + MP ++ +SW  +I+GL++    E+A+E F  MQ   G+  D V+++++ +AC  LGAL
Sbjct: 430 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 489

Query: 245 TLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSIIVGF 304
            L  W+  ++ +   + ++R+  +L+DM+SRCG  E A  +F  +  R + +W + I   
Sbjct: 490 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 549

Query: 305 AVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRVTPR 364
           A+ G A+ ++E FD M ++G KPDGV++ GALTACSH GLV +G E+F +M ++H V+P 
Sbjct: 550 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 609

Query: 365 IEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMKHLF 424
             HYGC+VDL GRAG LE+A+ +IE+MPM+PN+V+  SLLAACR  G+V MA    + + 
Sbjct: 610 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 669

Query: 425 KLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFVAGD 484
            L P    +YVLLSN+YA+ G+W    KVR +MK +G++K PG SS++I GK HEF +GD
Sbjct: 670 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 729

Query: 485 KYHTDADSIYSMLELLFHELKICGYVPD-TDIIMNTKESSK 524
           + H +  +I +ML+ +       G+VPD ++++M+  E  K
Sbjct: 730 ESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEK 767

BLAST of CaUC01G011570 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 9.5e-103
Identity = 172/476 (36.13%), Postives = 295/476 (61.97%), Query Frame = 0

Query: 49  FTANSIDPIVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSE 108
           FT      +V W S +  + + G   +A   F +M    V+ +HVT + +LS CA     
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--R 248

Query: 109 SLFFGSSLHGYARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTML 168
           +L FG  +  Y  +  ++  ++ +  A++DMY KC  +  A+++FD +  K++V+W TML
Sbjct: 249 NLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 308

Query: 169 DGYTRNGEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQC-SGIEPDY 228
           DGY  + + E A ++ + MP +D ++W ALI+   ++G   +AL  FH++Q    ++ + 
Sbjct: 309 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 368

Query: 229 VSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEK 288
           +++++ L+ACA +GAL LG W++ ++ +   + N  ++++LI MYS+CG +E +R+VF  
Sbjct: 369 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 428

Query: 289 MPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKG 348
           + KR +  W+++I G A++G  +E+++ F  MQ+   KP+GV++T    ACSH GLV++ 
Sbjct: 429 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 488

Query: 349 LELFDNMKRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACR 408
             LF  M+  + + P  +HY CIVD+ GR+G LE A+  IE MP+ P+  V G+LL AC+
Sbjct: 489 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 548

Query: 409 THGDVSMAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGC 468
            H ++++AE     L +L+P  D  +VLLSNIYA +GKWE  +++R+ M+  G++K+PGC
Sbjct: 549 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 608

Query: 469 SSVEIDGKVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSK 524
           SS+EIDG +HEF++GD  H  ++ +Y  L  +  +LK  GY P+   ++   E  +
Sbjct: 609 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

BLAST of CaUC01G011570 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 8.0e-102
Identity = 180/474 (37.97%), Postives = 292/474 (61.60%), Query Frame = 0

Query: 53  SIDP-IVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLF 112
           +IDP +  +T+++     NG   +A   + ++  + + PN  TF +LL  C      S  
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC------STK 149

Query: 113 FGSSLHGYARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGY 172
            G  +H +  KFGL      V T L+D+YAK   +  A+KVFD +  ++ VS   M+  Y
Sbjct: 150 SGKLIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 173 TRNGEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSG-IEPDYVSI 232
            + G +E A  LFD M  RD +SW  +I+G  +HG+   AL  F ++   G  +PD +++
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 233 IAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPK 292
           +A L+AC+ +GAL  G W++ FV     + N+++   LIDMYS+CG +E A  VF   P+
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 293 RTLVSWNSIIVGFAVNGFADESLEFFDAMQK-EGFKPDGVSYTGALTACSHAGLVNKGLE 352
           + +V+WN++I G+A++G++ ++L  F+ MQ   G +P  +++ G L AC+HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 353 LFDNMKRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTH 412
           +F++M + + + P+IEHYGC+V L GRAG+L+ A   I+ M M  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 413 GDVSMAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSS 472
           GD  + + + ++L  L+      YVLLSNIYA++G +EG  KVR  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 473 VEIDGKVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSK 524
           +EI+ KVHEF AGD+ H+ +  IY+ML  +   +K  GYVP+T+ ++   E ++
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETE 556

BLAST of CaUC01G011570 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 5.2e-101
Identity = 174/470 (37.02%), Postives = 294/470 (62.55%), Query Frame = 0

Query: 57  IVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSL 116
           +V W + + RYCR G + EA   F  M+ + V P+ +    ++S C    + ++ +  ++
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACG--RTGNMRYNRAI 236

Query: 117 HGY--ARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRN 176
           + +       +DT H++  TAL+ MYA    + +AR+ F  + V+N      M+ GY++ 
Sbjct: 237 YEFLIENDVRMDT-HLL--TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 296

Query: 177 GEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVL 236
           G ++ A  +FD+   +D + WT +I+  ++  Y ++AL  F +M CSGI+PD VS+ +V+
Sbjct: 297 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVI 356

Query: 237 AACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLV 296
           +ACA+LG L    WV+  +     +  + I+N+LI+MY++CG ++  R VFEKMP+R +V
Sbjct: 357 SACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVV 416

Query: 297 SWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 356
           SW+S+I   +++G A ++L  F  M++E  +P+ V++ G L  CSH+GLV +G ++F +M
Sbjct: 417 SWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASM 476

Query: 357 KRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSM 416
              + +TP++EHYGC+VDL+GRA  L +AL VIE MP+  N V+ GSL++ACR HG++ +
Sbjct: 477 TDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELEL 536

Query: 417 AERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDG 476
            +   K + +L+P  D   VL+SNIYA   +WE    +RR M+ + V K+ G S ++ +G
Sbjct: 537 GKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNG 596

Query: 477 KVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDT-DIIMNTKESSK 524
           K HEF+ GDK H  ++ IY+ L+ +  +LK+ GYVPD   ++++ +E  K
Sbjct: 597 KSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEK 641

BLAST of CaUC01G011570 vs. ExPASy TrEMBL
Match: A0A6J1CN07 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012760 PE=4 SV=1)

HSP 1 Score: 957.2 bits (2473), Expect = 2.8e-275
Identity = 466/524 (88.93%), Postives = 492/524 (93.89%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSSIP++TA   QLQQYPNP + IPL NP  +NFPRS NSS+ +ISSK T NSIDPIV W
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSS+ARYCRNGQL+EAAAEFT MRLAGVEPNHVT ITLLSGCADFPSESL+FGSSLHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
           RK GLDT HVMVGT+++DMYAKCAQLGLAR+VFDYL +KNSVSWNTMLDGYTRNGEIELA
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           +DLFDEMPTRDAISWTALINGLLK GYSEQALECFHQMQCSGI+PDYVSIIAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           G LTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCI FARQVFE+M KRTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VG+A NGFADESLEFFDAMQKEGFKPD VSYTGALTACSHAGLVNKGLELFDNMKRVHR+
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
            PRIEHYGCIVDLYGRAGRLEDAL+VIE+MPMKPNEVVLGSLLAACRTHGDVS+AERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HL KLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGDKYH DADSIYSML+LL HELKICG VP+T+  +NTKESSKD
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKD 524

BLAST of CaUC01G011570 vs. ExPASy TrEMBL
Match: A0A5A7UJB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G002000 PE=4 SV=1)

HSP 1 Score: 942.6 bits (2435), Expect = 7.2e-271
Identity = 465/524 (88.74%), Postives = 488/524 (93.13%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSSIPSH A PSQLQQ P+  S IPLSNPT +NFPRSP S H NI SKFTANS+ PIVQW
Sbjct: 1   MSSIPSHIASPSQLQQPPS--SSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSS+ARYC NGQL EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPSES FF SSLHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            KFGLDT HVMVGTALIDMY+KC+QLGLA+KVFDYLGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALT GLWVNRFVMQQEFKDN+RISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VGFA NGFADESLEFF AMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVH++
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
           TP IEHYGCIVDLYGRAGRLEDA NVIEEMPMKPNEVVLGSLLAACRTHGDV +AERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           H+FKLD  GDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKK G SSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGDKYH DAD+IYSML+LLFHELK+CGYVPDTDII+NTK+S+KD
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKD 521

BLAST of CaUC01G011570 vs. ExPASy TrEMBL
Match: A0A1S3C956 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498199 PE=4 SV=1)

HSP 1 Score: 942.6 bits (2435), Expect = 7.2e-271
Identity = 465/524 (88.74%), Postives = 488/524 (93.13%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSSIPSH A PSQLQQ P+  S IPLSNPT +NFPRSP S H NI SKFTANS+ PIVQW
Sbjct: 1   MSSIPSHIASPSQLQQPPS--SSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSS+ARYC NGQL EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPSES FF SSLHGYA
Sbjct: 61  TSSIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            KFGLDT HVMVGTALIDMY+KC+QLGLA+KVFDYLGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKFGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALT GLWVNRFVMQQEFKDN+RISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VGFA NGFADESLEFF AMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVH++
Sbjct: 301 VGFAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
           TP IEHYGCIVDLYGRAGRLEDA NVIEEMPMKPNEVVLGSLLAACRTHGDV +AERLMK
Sbjct: 361 TPGIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           H+FKLD  GDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKK G SSVEIDGKVHEFV
Sbjct: 421 HIFKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGDKYH DAD+IYSML+LLFHELK+CGYVPDTDII+NTK+S+KD
Sbjct: 481 AGDKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKD 521

BLAST of CaUC01G011570 vs. ExPASy TrEMBL
Match: A0A0A0LYD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1)

HSP 1 Score: 941.8 bits (2433), Expect = 1.2e-270
Identity = 462/524 (88.17%), Postives = 485/524 (92.56%), Query Frame = 0

Query: 1   MSSIPSHTAIPSQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIVQW 60
           MSSIPSHTA PSQLQ  P  PS IPLSNPT LNFPRSPNS H NISSKF  NS+DPIV W
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYA 120
           TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNH+TFITLLS CADFPSES FF SSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120

Query: 121 RKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELA 180
            K+GLDT HVMVGTALIDMY+KCAQLG ARKVF  LGVKNSVSWNTML+G+ RNGEIELA
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240
           + LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQ SG+  DYVSIIAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240

Query: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300
           GALTLGLWV+RFVM QEFKDNI+ISNSLIDMYSRCGCIEFARQVF KM KRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRV 360
           VGFAVNGFADESLEFF AMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK VH++
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMK 420
           TPRIEHYGCIVDLYGRAGRLEDALN+IEEMPMKPNEVVLGSLLAACRTHGDV++AERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480
           HLFKLDP GD+ YVLLSNIYAAIGKW+GAN VRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480

Query: 481 AGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           AGD YH DAD+IYSML+LL HELK+CGYVP +D I+NTKES+KD
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVPGSDTILNTKESNKD 524

BLAST of CaUC01G011570 vs. ExPASy TrEMBL
Match: A0A6J1HU31 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466586 PE=4 SV=1)

HSP 1 Score: 917.9 bits (2371), Expect = 1.9e-263
Identity = 447/526 (84.98%), Postives = 480/526 (91.25%), Query Frame = 0

Query: 1   MSSIPSHTAIP--SQLQQYPNPPSPIPLSNPTNLNFPRSPNSSHHNISSKFTANSIDPIV 60
           MSS+PSHT IP   QLQQY NPPSPIP SNP+NL+FPR+PNSS          N I PIV
Sbjct: 1   MSSVPSHTGIPFQFQLQQYSNPPSPIPHSNPSNLSFPRTPNSS----------NPIKPIV 60

Query: 61  QWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHG 120
            WTSS+ARYCRN QL+EAAAEFTRMRLAGVEPNH+TFITLLSGCADFPS SL FG+SLHG
Sbjct: 61  LWTSSIARYCRNAQLAEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHG 120

Query: 121 YARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIE 180
           Y RK GLDT HVMVGTALI MYAKCAQLGLAR VFDYL +KNSV+WNTMLDGY RNGEIE
Sbjct: 121 YVRKLGLDTGHVMVGTALIAMYAKCAQLGLARNVFDYLAMKNSVTWNTMLDGYMRNGEIE 180

Query: 181 LALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSGIEPDYVSIIAVLAACA 240
           LA++LFDEMPTRDAISWTALING LK GYSEQALECFH+MQCSGIEPDYVSIIAVLAACA
Sbjct: 181 LAIELFDEMPTRDAISWTALINGFLKQGYSEQALECFHEMQCSGIEPDYVSIIAVLAACA 240

Query: 241 DLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNS 300
           DLGAL+ GLWVNRF+MQQEFKDNIRISNSLIDMYSRCGCIEFARQVF+KM K TLVSWNS
Sbjct: 241 DLGALSFGLWVNRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMSKHTLVSWNS 300

Query: 301 IIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVH 360
           +IVGFA+NGFADESLEFFDAMQKEGF  DGVSYTGALTACSHAGLVNKGLELFDNMKRVH
Sbjct: 301 MIVGFAINGFADESLEFFDAMQKEGFMADGVSYTGALTACSHAGLVNKGLELFDNMKRVH 360

Query: 361 RVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERL 420
           R+TPRIEHYGCIVDLY RAGRL++ALNVIE MPMKPNEVVLGSLLAACRTHGDVS+AERL
Sbjct: 361 RITPRIEHYGCIVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERL 420

Query: 421 MKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHE 480
           +K+LF+LDPGGDS+YVLLSNIYAA+G+WEGANKVRRTMKARGVQKKPG SS+EIDGKVHE
Sbjct: 421 IKYLFELDPGGDSSYVLLSNIYAAVGRWEGANKVRRTMKARGVQKKPGFSSIEIDGKVHE 480

Query: 481 FVAGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSKD 525
           FVAGDKYH DAD+IYSMLE+LFHELKI GYVP+T   MN  ESSK+
Sbjct: 481 FVAGDKYHVDADNIYSMLEVLFHELKIYGYVPETATFMNGNESSKE 516

BLAST of CaUC01G011570 vs. TAIR 10
Match: AT1G05750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 594.7 bits (1532), Expect = 7.1e-170
Identity = 287/477 (60.17%), Postives = 361/477 (75.68%), Query Frame = 0

Query: 37  SPNSSHHNISSKFTANSIDPIVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFI 96
           +P    HN S+  T       V WTS +    RNG+L+EAA EF+ M LAGVEPNH+TFI
Sbjct: 22  NPKIQRHNQSTSETT------VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFI 81

Query: 97  TLLSGCADFPSESLFFGSSLHGYARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYL 156
            LLSGC DF S S   G  LHGYA K GLD  HVMVGTA+I MY+K  +   AR VFDY+
Sbjct: 82  ALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYM 141

Query: 157 GVKNSVSWNTMLDGYTRNGEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFH 216
             KNSV+WNTM+DGY R+G+++ A  +FD+MP RD ISWTA+ING +K GY E+AL  F 
Sbjct: 142 EDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFR 201

Query: 217 QMQCSGIEPDYVSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCG 276
           +MQ SG++PDYV+IIA L AC +LGAL+ GLWV+R+V+ Q+FK+N+R+SNSLID+Y RCG
Sbjct: 202 EMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCG 261

Query: 277 CIEFARQVFEKMPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALT 336
           C+EFARQVF  M KRT+VSWNS+IVGFA NG A ESL +F  MQ++GFKPD V++TGALT
Sbjct: 262 CVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALT 321

Query: 337 ACSHAGLVNKGLELFDNMKRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNE 396
           ACSH GLV +GL  F  MK  +R++PRIEHYGC+VDLY RAGRLEDAL +++ MPMKPNE
Sbjct: 322 ACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNE 381

Query: 397 VVLGSLLAACRTHG-DVSMAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRT 456
           VV+GSLLAAC  HG ++ +AERLMKHL  L+    SNYV+LSN+YAA GKWEGA+K+RR 
Sbjct: 382 VVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRK 441

Query: 457 MKARGVQKKPGCSSVEIDGKVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDT 513
           MK  G++K+PG SS+EID  +H F+AGD  H +   I  +LEL+  +L++ G V +T
Sbjct: 442 MKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492

BLAST of CaUC01G011570 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 394.0 bits (1011), Expect = 1.8e-109
Identity = 185/461 (40.13%), Postives = 293/461 (63.56%), Query Frame = 0

Query: 65  ARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYARKFG 124
           + Y R G   EA   F  M  +GV P+ ++ ++ +S C+     ++ +G S HGY  + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHGYVLRNG 369

Query: 125 LDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELALDLF 184
            ++W   +  ALIDMY KC +   A ++FD +  K  V+WN+++ GY  NGE++ A + F
Sbjct: 370 FESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 429

Query: 185 DEMPTRDAISWTALINGLLKHGYSEQALECFHQMQC-SGIEPDYVSIIAVLAACADLGAL 244
           + MP ++ +SW  +I+GL++    E+A+E F  MQ   G+  D V+++++ +AC  LGAL
Sbjct: 430 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 489

Query: 245 TLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSIIVGF 304
            L  W+  ++ +   + ++R+  +L+DM+SRCG  E A  +F  +  R + +W + I   
Sbjct: 490 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 549

Query: 305 AVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRVTPR 364
           A+ G A+ ++E FD M ++G KPDGV++ GALTACSH GLV +G E+F +M ++H V+P 
Sbjct: 550 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 609

Query: 365 IEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMKHLF 424
             HYGC+VDL GRAG LE+A+ +IE+MPM+PN+V+  SLLAACR  G+V MA    + + 
Sbjct: 610 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 669

Query: 425 KLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFVAGD 484
            L P    +YVLLSN+YA+ G+W    KVR +MK +G++K PG SS++I GK HEF +GD
Sbjct: 670 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 729

Query: 485 KYHTDADSIYSMLELLFHELKICGYVPD-TDIIMNTKESSK 524
           + H +  +I +ML+ +       G+VPD ++++M+  E  K
Sbjct: 730 ESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEK 767

BLAST of CaUC01G011570 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 394.0 bits (1011), Expect = 1.8e-109
Identity = 185/461 (40.13%), Postives = 293/461 (63.56%), Query Frame = 0

Query: 65  ARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLFFGSSLHGYARKFG 124
           + Y R G   EA   F  M  +GV P+ ++ ++ +S C+     ++ +G S HGY  + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHGYVLRNG 369

Query: 125 LDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGYTRNGEIELALDLF 184
            ++W   +  ALIDMY KC +   A ++FD +  K  V+WN+++ GY  NGE++ A + F
Sbjct: 370 FESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 429

Query: 185 DEMPTRDAISWTALINGLLKHGYSEQALECFHQMQC-SGIEPDYVSIIAVLAACADLGAL 244
           + MP ++ +SW  +I+GL++    E+A+E F  MQ   G+  D V+++++ +AC  LGAL
Sbjct: 430 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 489

Query: 245 TLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPKRTLVSWNSIIVGF 304
            L  W+  ++ +   + ++R+  +L+DM+SRCG  E A  +F  +  R + +W + I   
Sbjct: 490 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 549

Query: 305 AVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHRVTPR 364
           A+ G A+ ++E FD M ++G KPDGV++ GALTACSH GLV +G E+F +M ++H V+P 
Sbjct: 550 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 609

Query: 365 IEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTHGDVSMAERLMKHLF 424
             HYGC+VDL GRAG LE+A+ +IE+MPM+PN+V+  SLLAACR  G+V MA    + + 
Sbjct: 610 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 669

Query: 425 KLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFVAGD 484
            L P    +YVLLSN+YA+ G+W    KVR +MK +G++K PG SS++I GK HEF +GD
Sbjct: 670 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 729

Query: 485 KYHTDADSIYSMLELLFHELKICGYVPD-TDIIMNTKESSK 524
           + H +  +I +ML+ +       G+VPD ++++M+  E  K
Sbjct: 730 ESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEK 767

BLAST of CaUC01G011570 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 375.6 bits (963), Expect = 6.7e-104
Identity = 172/476 (36.13%), Postives = 295/476 (61.97%), Query Frame = 0

Query: 49  FTANSIDPIVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSE 108
           FT      +V W S +  + + G   +A   F +M    V+ +HVT + +LS CA     
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--R 248

Query: 109 SLFFGSSLHGYARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTML 168
           +L FG  +  Y  +  ++  ++ +  A++DMY KC  +  A+++FD +  K++V+W TML
Sbjct: 249 NLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 308

Query: 169 DGYTRNGEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQC-SGIEPDY 228
           DGY  + + E A ++ + MP +D ++W ALI+   ++G   +AL  FH++Q    ++ + 
Sbjct: 309 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 368

Query: 229 VSIIAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEK 288
           +++++ L+ACA +GAL LG W++ ++ +   + N  ++++LI MYS+CG +E +R+VF  
Sbjct: 369 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 428

Query: 289 MPKRTLVSWNSIIVGFAVNGFADESLEFFDAMQKEGFKPDGVSYTGALTACSHAGLVNKG 348
           + KR +  W+++I G A++G  +E+++ F  MQ+   KP+GV++T    ACSH GLV++ 
Sbjct: 429 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 488

Query: 349 LELFDNMKRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACR 408
             LF  M+  + + P  +HY CIVD+ GR+G LE A+  IE MP+ P+  V G+LL AC+
Sbjct: 489 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 548

Query: 409 THGDVSMAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGC 468
            H ++++AE     L +L+P  D  +VLLSNIYA +GKWE  +++R+ M+  G++K+PGC
Sbjct: 549 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 608

Query: 469 SSVEIDGKVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSK 524
           SS+EIDG +HEF++GD  H  ++ +Y  L  +  +LK  GY P+   ++   E  +
Sbjct: 609 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEE 661

BLAST of CaUC01G011570 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 372.5 bits (955), Expect = 5.7e-103
Identity = 180/474 (37.97%), Postives = 292/474 (61.60%), Query Frame = 0

Query: 53  SIDP-IVQWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHVTFITLLSGCADFPSESLF 112
           +IDP +  +T+++     NG   +A   + ++  + + PN  TF +LL  C      S  
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC------STK 149

Query: 113 FGSSLHGYARKFGLDTWHVMVGTALIDMYAKCAQLGLARKVFDYLGVKNSVSWNTMLDGY 172
            G  +H +  KFGL      V T L+D+YAK   +  A+KVFD +  ++ VS   M+  Y
Sbjct: 150 SGKLIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 173 TRNGEIELALDLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQCSG-IEPDYVSI 232
            + G +E A  LFD M  RD +SW  +I+G  +HG+   AL  F ++   G  +PD +++
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 233 IAVLAACADLGALTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFEKMPK 292
           +A L+AC+ +GAL  G W++ FV     + N+++   LIDMYS+CG +E A  VF   P+
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 293 RTLVSWNSIIVGFAVNGFADESLEFFDAMQK-EGFKPDGVSYTGALTACSHAGLVNKGLE 352
           + +V+WN++I G+A++G++ ++L  F+ MQ   G +P  +++ G L AC+HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 353 LFDNMKRVHRVTPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTH 412
           +F++M + + + P+IEHYGC+V L GRAG+L+ A   I+ M M  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 413 GDVSMAERLMKHLFKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGCSS 472
           GD  + + + ++L  L+      YVLLSNIYA++G +EG  KVR  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 473 VEIDGKVHEFVAGDKYHTDADSIYSMLELLFHELKICGYVPDTDIIMNTKESSK 524
           +EI+ KVHEF AGD+ H+ +  IY+ML  +   +K  GYVP+T+ ++   E ++
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETE 556

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877228.15.4e-28993.13pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa ... [more]
XP_022142716.15.8e-27588.93pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica ... [more]
XP_008458940.11.5e-27088.74PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic ... [more]
XP_004139593.12.5e-27088.17pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucumis sa... [more]
XP_022967078.13.9e-26384.98pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita ... [more]
Match NameE-valueIdentityDescription
Q9MA509.9e-16960.17Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidop... [more]
Q9LUJ22.6e-10840.13Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
O823809.5e-10336.13Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9SZT88.0e-10237.97Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
O233375.2e-10137.02Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1CN072.8e-27588.93pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordic... [more]
A0A5A7UJB67.2e-27188.74Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3C9567.2e-27188.74pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucumis ... [more]
A0A0A0LYD61.2e-27088.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1[more]
A0A6J1HU311.9e-26384.98pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbit... [more]
Match NameE-valueIdentityDescription
AT1G05750.17.1e-17060.17Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G22690.11.8e-10940.13CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012... [more]
AT3G22690.21.8e-10940.13INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro... [more]
AT2G29760.16.7e-10436.13Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G37380.15.7e-10337.97Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 38..109
e-value: 2.5E-8
score: 35.5
coord: 124..245
e-value: 1.3E-30
score: 108.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 246..356
e-value: 3.9E-25
score: 90.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 357..425
e-value: 1.3E-7
score: 33.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 135..290
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 367..390
e-value: 7.3E-4
score: 17.6
coord: 294..327
e-value: 3.0E-6
score: 25.1
coord: 193..226
e-value: 4.3E-9
score: 34.0
coord: 162..190
e-value: 2.8E-8
score: 31.4
coord: 329..356
e-value: 0.0032
score: 15.5
coord: 266..291
e-value: 0.0012
score: 16.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 266..291
e-value: 1.1E-4
score: 22.2
coord: 366..391
e-value: 0.0013
score: 18.8
coord: 162..189
e-value: 9.3E-9
score: 35.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 293..339
e-value: 2.7E-7
score: 30.7
coord: 191..238
e-value: 4.6E-10
score: 39.5
coord: 58..103
e-value: 6.5E-8
score: 32.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 56..90
score: 9.415814
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 11.597113
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..225
score: 12.156139
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 261..291
score: 8.911594
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 160..190
score: 11.355965
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availablePANTHERPTHR47926:SF65BNAANNG25350D PROTEINcoord: 38..512
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 38..512

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G011570.1CaUC01G011570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding