CaUC01G011360 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G011360
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
LocationCiama_Chr01: 18555577 .. 18558334 (-)
RNA-Seq ExpressionCaUC01G011360
SyntenyCaUC01G011360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGATTAGTTTGTTTAAATTCCTTCATTGCTGTGTGATTTATCAGGGCCAGCACAGTTCTTGATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGGTTGGAATAATTTTCCATTCCTTAAATATTTTGTTTCTAGTTCTTTGCACGGTCTTTATTGTGCACAAGATTCTTTTCTACCGACTTTTGTGTTTCATTCTGGCAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTAAGCCCTCTGTGTATGACAGTGGTTCTTCACGTCAAATGATCTTTCAAATTTAGATAGGCTTATTGCCTCGTGTTGGGCGTCTGTGTTTAATGACTTTTGTACTTATTTGTTGGGTTTTATTCTTAAAACTTTTTCTTTCTCTATAGGTTAGCTGTTAGGGTCTGTTGGGTTCCTTCTGTGCTTCACTTTTGTGTGTCCAACTTTTTTTTTTTTTTTTTTTTTCTTTTGTTGCAATTGTTTATTTTTAATGTTCTGGTTAACCCTTCTTTCTTCTTTCATTTTTTTCTCCGTGGACGTTGGGTTCCTTTGGAGCAGTCACTTTTGTAGGTGAATTTTGACATTTATTTATTTATTATTATTTTTATTTATTTGATTTTTTCCCCTTTGATCGAATGATCTTTCAGGTTTAGTTTTAAGGGTTCTAGCAAACTTTCTTGGACTGGTATTGCTTGAGGTTTTCGTTTGTTTTCTTAGTTTGTTAATTATTTGATGGGGGATGGTGCTAACCATTATATTTCGGAGGATACTTGGGTGGGAAAAACCCCTTTGTGCTCTATTTCCTCAACTCTATCACTTGTTAGATAGTGCATGCATTCGATAGCCTTTGTCTTGCCTCTTTTGATAGTTTCTTCCTCTTGTCCCTTAGTTTTCACCGTTCCCCTACCGACCGGGTTGTTGGCCTTCTTTCTATTGTTTCTGGTCAAGTAGTCCATCATGGGAGAAGGGATTCCAAGTTTTGGGCTCCAAGCCATCTAAGGGTTTCTCTTGTAACTCTTTTTTTCATATTCTTTGCTCCCCTCCTCTCTGCTTGGGTGCCTTTGCATTCTCTTCTCTTTGGCAGGTTAAAATTTCCAAAAAAGTAAAAGTCTTTGTCTGGCAAGTTCTGGATGGGAGAGTGAACTCACAAGATCGTCTCCAAAGAAATTAATCATTGGTGCCACAATCGCAATAGGGGTTGCTCTTCTTTGATTTGAGGAGGTGCTTATAAATTCTCCTTTCCATGATAAAGGAAGAGTTTTGTGGCAAGGTTTTCATTTTTTTTTTCCGGCTATTTGTTGGGGAATTCGGATGGAGAGGAACAATAGGACTTTTAGAGGGTGAGGGTCTAAGGGATTTGGATATGAGCCCTGTGAGTTAATGGTTTAATTCTTCATTATGGGCGTCCGTTATCAGCAGGGTCTCATTCTTTTAGATTGGAATCATTTCTTGTATTTGGCCTGGGGCTGTGCTGCTTTTGTTGGTTTGTTTTCTTTTCTTTTTATGATTTTGGTTTTCCCTTGTACCTTCTTTCATTCTTCTCAATGCAAGCTTGGTTTCTTATATAAAGAGAAAAACTGATCTTTCAAGTTTGGATTTGAAATTGGGTATTGAATCTGGTAAGGCTTCATTGTATAAATTAATCTCTGACAATTCAAGCATGTAATAGATTTTCATGGTAACTTCACTTGAAATTATCATGAAAAGCTTACATTCAAACAACTGATTTGCAAAATTTGAACTTTGAACTTGATTAATTGTTGTTATTAAAGTATGTTATTATATTAAATTTAATCCTATCAGAAGTCCAGATAAAATTTTATAACAAAACGTGCTCTCCCTCATATCAGGTTCCTGCCAGGAAAAATATGGAATGAGTGTGTTGAGAGTATTACTGGGAACATTTGGGATATTGTTAGTGACATAATGCTTGCTAATTTGTGGTTAGTTTGTTAAGGTGAGTTGGTTGGAAGTTAGGGAGTGTAGAGGACGGGTATTGCTGCTGAATGATATTAATTTGTTAGCATTTGGTTCTCATAATCGAGATCCTATTCCTAGCATATTGTAGAGATTAATTAAAAGATAATTGTTTTGTGGTTGTTGGTATGCTTATTTTGAGTATTGTTGAAGATGGGGCATCATTATCCGGATTTGGTGTTTCATAGGTAACAATGATAAGCTCTAATATTTAATTATAAGCGAAGAGTATGTCTGGATATATTTTCTTTTTAATATTCCACAACTCTCAAGTCTCAATAGTTATCTAATTGGCGACATGTCAAAATTATTTTTAAAAATCTCGAAAGACTCCCCTTTTCTCTTTTTGGAAGAAGATGCATGATAGGTTTTTCTCTCACAAGTAAAGTAAATGTTTCATTTAAAAGTGTCTCAATACAATCCTAAATTTTACGTAAATCTTTTTAAATTATATGTGAGGAATAATGTGACACATTTTTCCTTCCTTGAAATCAGGATATCCAAGTTACGTTACGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

mRNA sequence

ACAGATTAGTTTGTTTAAATTCCTTCATTGCTGTGTGATTTATCAGGGCCAGCACAGTTCTTGATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTACGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

Coding sequence (CDS)

ATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTACGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

Protein sequence

MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS
Homology
[Close]
BLAST of CaUC01G011360 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 6.9e-59
Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of CaUC01G011360 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of CaUC01G011360 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 2.6e-58
Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of CaUC01G011360 vs. NCBI nr
Match: XP_038894867.1 (mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_038894868.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 5.8e-58
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD PTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDLPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLD M+QTIDEYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDAMKQTIDEYQVKMEDS 118

[Close]
BLAST of CaUC01G011360 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of CaUC01G011360 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.3e-46
Identity = 84/111 (75.68%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEYV+++L+ ++QT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of CaUC01G011360 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.3e-59
Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of CaUC01G011360 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of CaUC01G011360 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of CaUC01G011360 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEY+I KLDGM+QTIDEYQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of CaUC01G011360 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.2e-54
Identity = 111/140 (79.29%), Postives = 116/140 (82.86%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVI 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY++
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of CaUC01G011360 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.8e-47
Identity = 84/111 (75.68%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 1   MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEYV+++L+ ++QT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:
BLAST of CaUC01G011360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442051.16.9e-5996.61PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]... [more]
XP_022927640.11.2e-5897.46mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
XP_023520392.12.6e-5896.61mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep... [more]
XP_038894867.15.8e-5896.61mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_0... [more]
XP_022142440.17.6e-5895.76mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP... [more]
BLAST of CaUC01G011360 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ID775.3e-4675.68Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of CaUC01G011360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B5G73.3e-5996.61Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
A0A6J1EPJ15.7e-5997.46Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A6J1CKY43.7e-5895.76Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX... [more]
A0A6J1I6T53.1e-5794.92Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36... [more]
A0A0A0L4503.2e-5479.29Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
BLAST of CaUC01G011360 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01435.13.8e-4775.68Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..113
e-value: 2.6E-14
score: 53.8
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 1..114
NoneNo IPR availableGENE3D1.10.287.3490coord: 7..75
e-value: 1.1E-6
score: 31.0
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G011360.1CaUC01G011360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity