CaUC01G011120 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G011120
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionIntegrase core domain containing protein
LocationCiama_Chr01: 17779958 .. 17780140 (-)
RNA-Seq ExpressionCaUC01G011120
SyntenyCaUC01G011120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCATGCTACCAAAGCATCCAGCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTTGAAGGATGGCTCGTTGTTGACCAGCTTCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAATGA

mRNA sequence

ATGGAAGCATGCTACCAAAGCATCCAGCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTTGAAGGATGGCTCGTTGTTGACCAGCTTCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAATGA

Coding sequence (CDS)

ATGGAAGCATGCTACCAAAGCATCCAGCTCTCAAGTCGCAACCAACGACATTGTGACCCACGAGACAACCGAAGTCATCAATCCAGTGTTGAAGGATGGCTCGTTGTTGACCAGCTTCTCCTGGGTTGGCTCTACAACTCCATGACACCTAAAGTGGCCACACAGCTCATGGGCTTTGAATGA

Protein sequence

MEACYQSIQLSSRNQRHCDPRDNRSHQSSVEGWLVVDQLLLGWLYNSMTPKVATQLMGFE
Homology
BLAST of CaUC01G011120 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-05
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0

Query: 31 EGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          E W+  DQLLLGWLYNSMTP+VATQ+MG+E
Sbjct: 36 ESWVTTDQLLLGWLYNSMTPEVATQVMGYE 65

BLAST of CaUC01G011120 vs. NCBI nr
Match: XP_038904321.1 (uncharacterized protein LOC120090675 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-05
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 33 WLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          W+ VDQLLLGWLYNSMTPK+A Q+MGFE
Sbjct: 49 WMAVDQLLLGWLYNSMTPKIAIQVMGFE 76

BLAST of CaUC01G011120 vs. NCBI nr
Match: XP_038875135.1 (uncharacterized protein LOC120067668 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-05
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 0

Query: 22 DNRSHQSSVEGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          D +S     E W+  DQLLLGWLYNSM P+VA QLMGFE
Sbjct: 60 DEQSLNPLYEAWVTADQLLLGWLYNSMAPEVAVQLMGFE 98

BLAST of CaUC01G011120 vs. NCBI nr
Match: KAA0041209.1 (uncharacterized protein E6C27_scaffold128G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0

Query: 31 EGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          + WLVV Q LLGW+YNSMTP++ATQLMGFE
Sbjct: 51 KAWLVVYQHLLGWMYNSMTPEIATQLMGFE 80

BLAST of CaUC01G011120 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 31 EGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          E W+ VDQLLLGWLYNSMTP+VA Q+MG E
Sbjct: 47 ESWMAVDQLLLGWLYNSMTPEVAIQVMGCE 76

BLAST of CaUC01G011120 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0

Query: 31 EGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          E W+  DQLLLGWLYNSMTP+VATQ+MG+E
Sbjct: 36 ESWVTTDQLLLGWLYNSMTPEVATQVMGYE 65

BLAST of CaUC01G011120 vs. ExPASy TrEMBL
Match: A0A5A7TIP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001630 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0

Query: 31 EGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          + WLVV Q LLGW+YNSMTP++ATQLMGFE
Sbjct: 51 KAWLVVYQHLLGWMYNSMTPEIATQLMGFE 80

BLAST of CaUC01G011120 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 31  EGWLVVDQLLLGWLYNSMTPKVATQLMGF 60
           E W++ D LLLGWLYNSMTPKVA QLMGF
Sbjct: 115 EQWIMTDLLLLGWLYNSMTPKVAVQLMGF 143

BLAST of CaUC01G011120 vs. ExPASy TrEMBL
Match: A0A5A7UCB8 (Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00710 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0

Query: 31 EGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          E WLVVDQLLL W+YNSMTPK+ TQLM  E
Sbjct: 25 EAWLVVDQLLLRWMYNSMTPKIVTQLMRLE 54

BLAST of CaUC01G011120 vs. ExPASy TrEMBL
Match: A0A5D3D6E7 (Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00230 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 0

Query: 31 EGWLVVDQLLLGWLYNSMTPKVATQLMGFE 61
          E WLVVDQLLL W+YNSMTPK+ TQLM  E
Sbjct: 25 EAWLVVDQLLLRWMYNSMTPKIVTQLMRLE 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022148963.15.0e-0576.67uncharacterized protein LOC111017501 [Momordica charantia][more]
XP_038904321.15.0e-0582.14uncharacterized protein LOC120090675 [Benincasa hispida][more]
XP_038875135.15.0e-0564.10uncharacterized protein LOC120067668 [Benincasa hispida][more]
KAA0041209.12.5e-0476.67uncharacterized protein E6C27_scaffold128G001630 [Cucumis melo var. makuwa][more]
XP_038905164.12.5e-0476.67uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D5J02.4e-0576.67uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5A7TIP21.2e-0476.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VCS12.0e-0479.31Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m... [more]
A0A5A7UCB82.0e-0476.67Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3D6E72.0e-0476.67Integrase core domain containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G011120.1CaUC01G011120.1mRNA