CaUC01G010500 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G010500
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 15575333 .. 15581109 (+)
RNA-Seq ExpressionCaUC01G010500
SyntenyCaUC01G010500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGCGTTCAAGGTTGTGATGCATCTAAGCTTGTTAAGCACTTGAGCCAGCAACCAAGTATGCTAAAGAAGGTTGCGTTATTTTGATAAACAAAAATTAAATTGATTAAAGAAAGGGAGAAAGTGGAAGTTAAGTCGGCAACCTATATAAAGGAGTGAGCTGAGTGTTTAATCATTTTTAAACACATTCCAGAGCTCGAGTCGGTTCCATGTTTCAGACGAGCAATGAGGGAAGGTAGAAGAAGGTGTTCATATCGAATTCAAGTAGAATTCTGTTGGTTTTGGTGGTGTAACTGAAGCTGGAATAGGAATTTTGATTGCAGTCATAGAATCCGAGCATGGTCTAGTGTTTGGAAAAGAGCAAGCTGAGGAAGTCGAAGTTAGGGTTGAAATTTTAAGGTTAGTAAGTTAACTCAATTTCTAACCATTTCTATGAAGGATGTTTGAGTTGAATTTGAGGGAAAATATGTAAAATTGTAGGTAGAAGTGATTGCTACTGGTTTGTTAGGCGATTGAAAGCAACTCGGTGTTATTTAAAAATATCTCCCAAACGGAGAGGAATTATATTCTGAAATTTTGAGGTAAGTTAAAAAACCTATTTCTTTACAAGTTTGTAGAAGGGAATAAGTTCTGAATTTGGCTGGAAATATGATTTTTATCAGATAGAAGTGAGAACAAAAGGAAAGGAAGAAACTGTGGCTGTCAAGTGTCGCTGGAACTGCAATGTCGTCGAGAAGTTGGAGAGTGAGTAGCGAGACGAGTGCCGTTGGTGGCACAGAGAGCTATGCGTCTCACAAATGTTGTTGAGTGTCGCTAGGTTTCGCTACTCAAGGTGAATCTTGCTAGTCTCGCTCACTATGATCTCGCTAGTGTTATATATGTGTAACCCAGTCTCGTTAGTAGTCTCGCTGGTTATATATATTCTCGCTCATTATGAGTTCTTTTGGGAGAAGTGAGTCTCGGTGATGAAATATATTTGGAGTCTGATTATGCAAACTAAATGATTATGGAAAGAAATTCTAGGGAAGTCTAACACGAGAAATGTGGATTTATGACGATGAGACTAAAGGTAGCATATGAGTTTATGAAAAGTATTGTGATGTATGAGACGTTACTAGAGTATGAATGAGAATATGAATTATGAGGTAAGAATAATGAAAGCGTGTGAGCATATGAAAAATGTTGTGATGTAGGAGATATTACAAACTTATGATTTTATGTTATATTGTATTCTTATTTGAATGGCTCCCAATGCCGAGGTACGAAGAGAAGGCATGTGAGATATTTGTGTATGTAATTAGCTTCATGCTAATATTGTTTCGTTTATCATGAAATGATTTATAAAGAACTATTTATGCAAAGCATATTTGCTTTATAATGTTTTCTAAGGAACCCAATGCTGAGGGAAGATGTGAAGGCATGTGGCAAATCCAGTGTTGTAAGAAACCCAATGTTGAGGGAAGATGTGAAGGCATATGGGAAATCCAGTGTCGTAAGAAACCCAATGCTGAGGGAAGATGTGAAGGCATATGGGAAATCCAGTGTTGGAAGAAACCCAATCCTGAGGGACGATGTGAAGGCATGTGGGCAATCTTGTATTTGAAAACTCAGTGCTGAGAGATGTAGAGAAGGCACTTGAGTATCCTGGTGATCCAGTACTGAAGCTCTGGGAGAAGGTACTTGGGTAGCCCGTGAGCAAATTGTGATTTAGTGATGCTGAGGTGTTGAAAGTACTCCACTCAGCTAAGAAATATGTGCATTGAGCTTCGCTCCACCTCAACTAGGGAAGGAGATTTAAAGGAAACGGTTTGTGAATAATGTTTCCATAGATAATCAGATGTAGTTAAACTATGATCTGATGTATGCTAGTGATGGATATGGCTAGATTTTATACTTTCATACACTGTCGAGAAAAACTTTAATTAGTCACTCACTGGCGTTTAAGCTCACGTTTTCCTTGTTTTTTTATTTTTTTTCCAGGTAGCGAGCGAGTTCGGGATGCTTAGCCTACGCAAGATCTTGTCTGGGTCTACCAACGGTGTTTAGTATTCTAAAAATTGTAAATAATTGAACTGGATCATGTGTTGTACATATAGAGAGGGTTAAGGAAGTTGTGTATTTATGCTATTATATGACTGAATGAAAAGGATGTGCGTATGGCAAGTTAACTCTGGTGTATGTGTGAAGTAGTTTATGGTTTATAACTGTTTATTAGGTAAAGGCAGAGTTTATGGTTGACAATGGATGTCGTAAGAGGGTTGGTGTCCGCTGCCATCATGCTTCTTCCTGGGTTAGGAGGGTACCTAGGAAGGAGTCTGACAGCCCTGCTGTCACGCCCCCTCCCGGATTATCCTCTAAATCCCGAGAGGAGATGTGAAGATAGCAACCTTGACTCCTCTGTAAGGTTCACTGTCCAACCATTTTTTCTTTAAGGCGGCCCAGACGAGGTTCTTGCGTAGGCAAGGCATCCCGAACTTGCTCACTACCTGGAAAATTAGAAAAATGGAAAACGTGAGTTAAAGCCCCGTGAGTGACAAGTTTTGTAAAACGAGCTTTTGTTATAAAACAGGCATGTTACATTTGTACACATAAAACAAGGATTCAACATAATAGTTCAACCAAACATATTTTCCACAAACTTAACATTTCATAATCCAAACCAAATCGTATCGAATCGTTTTCCTTTATAATTAAATAGAAAACCGTTTGGTTTCTCAATCTTTTCCCTTAGTTGAGGCGGAGCAAGACTCAACGCTCTCAACGTCGAAAACAACCTTAGTTGGGGATGGAGCAAGGCTCAACTCACCCAACGTCGAAATCATCCCTGGCTCGATGCGGAGCAAACTCGACGCACCAGCCAAATTAACCTCTATGTGCACATAGGAATATGACGGGTTGCCCAAGTACCTTCTCCATGTCCTTCAGTACTGGGTCCCGGGGAAACTCACGTGCCTTCTCATGTCCTTGAGCACTGAGCCTCCTCTAAAACATTATAGAAACCCATTCACATAAATAGTTCATTTGAGAATCCTTTCGTAGAAATTCATACAGATCTTTAATCAATAACATTTCATAAAAATGCGTTCTAACAACTTAGAAAACATTTAACATGCCTTGTGAACAATAAAATCAAACATTATGCTTTTTAAAACAATTAATCGCAAACCATATCTTATAAGAATATTTTCAATAAAAATCGATTTGAAGGAGAAAGGTGTCACTCACAATTTATCCTTAGGCCCCGAGTTGATTATGTGCCTTTCCGAGCTTTTCTTGGCCTGTAAATACACATTCTTCACGTTACGTTTTCCTTAACTTTTCTTTACATGTTTGTACGATAATTAGACTCTGATCCTAAATCATCACCGAGTCTCCCCTTTCCAAAGTGAAGTAATAAGTAAGATTTGCGTTATTAGCGAGACAGCTAGCGATATTTCATATTCCCAGCTAGATTACTAGTGAAGCTACGCAACTGGACATGTTACTAGCGATACTAGGTTGAGCGGGACTAGCGTGATTTTACCTGAGGAGCGATACTAGCGATACTCAGCGAGTTTTGTGAGACGGAACGCTCCCTTGGGTCTCAGCGACACTCGTCTCGCTACCTGGCCTTCTTTACTCAGCGATACCCGCTCCTCAGCGGCACCCGATAACTGAGATTTCTTCCTTTCCTTTTGCTCTTGCTCCTATTTGTTAAAAGTCATACATCCCGTCAGATTTAGAACTTCTTCTCTTCTACAAACTTGTAGAGAATTGAGTTTCGCAGGTTACCTCAAAATTTCAAGACTTAGCTCCCTTTCGTTCCCCAGCTATCCCAAAATTACTCTGCGTTGCTCTAGCTTGCACAACAATTCGGTAACCATTGCTTTTATCTAAAATTTTACATATTCAACTTCAGTTTCAGCTCTTTCATCCTTCTCAAGAATTGTTAAGGATTTTGTTAGCTTACTGACCTTAAAATTTCAGCCTTAGACTCGATCTTTTCGATCCACTCTACTCCAAACATCATGCGTCGTCCAGTCCGTGCGTCCTGAACAACGTTCTGTTCTAGCTTAGATTTTAACACCAACACGAGTAGATTCCCGTCCAAAATCCACCGGGACACCCATTTCTACTTCCCTTTGTAGTTCGTCTGAAAAGTGAAACCGACTCAAGTTCTCGAAGTGTCTAAAATGATTAAATATTTAATTCATTTTCCTTTATATATATATAACCGACTTAAGCTCTCGAAGTGTCCAGAATGATTGAATATAAATTTATTTACTTTTATATATACCACCGACTTAACCCTTCAAGGTAGGTTGGCGCACTGGGTTCTCATTTCTTACTTCAACACAAGGCACCCATAACGCCACCTACCCTAACGCCTTCATCAATCTGTATAAAGCGTGCATCTCCGCTCAGGGAGTAGGTCAAAGCCTTTTTTTTTTTAGAAAAGTCAAAAGCTGGAATCCGAGAAAACAAGACCCCTAAGAGCGTCTTGTAAACAAATTATTCGATCTGGAGATCCCAGCAAGGCTGCCGGAGACATCACTAAACCACCCGGGGATGTCTCTTGCAAAGAAGAATTCGTAGAGATTTTTCCAGAACCCCAGTCCAGCCTACCTGACTGATATAATCTAGAATCCACTCTCCGCCTTTACTTAACTTAGTAGTAGGCGAATAGTGACCCTATTTGTATGCGCATTCACACGACGGGCACGTTCCAAGATCTCCCGCAACGAGAACCTAAGACATGGTTGATTGATAGTAAGTTGAAACAATAAATGGATCGATCATAGGTTGGTTGAATATTGAGTTCCGCTTAGGCTACGTGTTCTGTTTACGCGCTACTAAGCCGGCACACAGGATCTTAGACAGGTTTCGTCCCCTTTCGGGAACACCTTCTTACTAGTACGGGCTAAGCCTGATGCAAATAGACCGAAAAAAGAAGATATCGTTGGTCGATTCTTTATAGATGAGTTGTAGTCGATTCGCCCCTGATGTTATGGCTCGTCTCGCGCTTAGTCACTCGCGGGATTCGGATAGGGGGGCAGCAAGTCTTTTCTGAAAAAACTCGCAGTTCTACCCCCCTATATATATATATATATTATTTTTTAGATACTAACTCTTTGGTTGGATCGGACAGGGACTTCTATAAAGATCTTTCCACTCATTCATCATACTCAAAGTCGAAGTCACGGCCGGCATGGGGGGGGCTCGGAAAAATAACGAGAATCGGTGTCGTGGTGGTACTACGAGATGGCGATTTATCGTATAGAAGAATAGATCCGCGGACCTATTGATTGACCATAGATGCGACCGCTATCTAAGAGAATCTCAGTAGTTCTTCTATCGTTCAAGGGCAAGGGGAAAACATGTAGCGGCTTGCCTAGATCTCGTATTTCCCACGTAGTCCGTCGGTCAAACCAACGATTCTCTTCTCAAAGTAATAGAGAGATTCTTTTTCTTTTTCTGGTATGTAGCTCCGCGAGCTAGGAGCGCATCATCGGGGCAGGGCGAAAACGAACATAGGATCATCATCATGGCCCTTTTCTTGTTTCTTTTGTTTGTGTCCGGCTTTATTTAGTTAAAAAGAGGTGTGTGTTTTTTTTTTAAGGCTTATCCGGGGGCAGCTGCTCTGGGGCATCCAATTCCTCTTCTTTCTTTTCCTGCTGATCTCACATCGAGAGCAGCTCCTTCTTGTTCAGGGTCATCAGATGAGAGATCTTCCTCTGATTCCGAGAAATCGGTCAAGCGGGGGGCTACCCTTGACTCACCTCTCGAGATATAA

mRNA sequence

ATGGGATGTGCGTATGGCAAGTTAACTCTGGTAAAGGCAGAGTTTATGGTTGACAATGGATGTCGTAAGAGGATGAGTTGTAGTCGATTCGCCCCTGATGTTATGGCTCGTCTCGCGCTTAGTCACTCGCGGGATTCGGATAGGGGGGCAGCAAATACTAACTCTTTGGTTGGATCGGACAGGGACTTCTATAAAGATCTTTCCACTCATTCATCATACTCAAAGTCGAAGTCACGGCCGGCATGGGGGGGGCTCGGAAAAATAACGAGAATCGGTGTCGTGGTGGCTTATCCGGGGGCAGCTGCTCTGGGGCATCCAATTCCTCTTCTTTCTTTTCCTGCTGATCTCACATCGAGAGCAGCTCCTTCTTGTTCAGGGTCATCAGATGAGAGATCTTCCTCTGATTCCGAGAAATCGGTCAAGCGGGGGGCTACCCTTGACTCACCTCTCGAGATATAA

Coding sequence (CDS)

ATGGGATGTGCGTATGGCAAGTTAACTCTGGTAAAGGCAGAGTTTATGGTTGACAATGGATGTCGTAAGAGGATGAGTTGTAGTCGATTCGCCCCTGATGTTATGGCTCGTCTCGCGCTTAGTCACTCGCGGGATTCGGATAGGGGGGCAGCAAATACTAACTCTTTGGTTGGATCGGACAGGGACTTCTATAAAGATCTTTCCACTCATTCATCATACTCAAAGTCGAAGTCACGGCCGGCATGGGGGGGGCTCGGAAAAATAACGAGAATCGGTGTCGTGGTGGCTTATCCGGGGGCAGCTGCTCTGGGGCATCCAATTCCTCTTCTTTCTTTTCCTGCTGATCTCACATCGAGAGCAGCTCCTTCTTGTTCAGGGTCATCAGATGAGAGATCTTCCTCTGATTCCGAGAAATCGGTCAAGCGGGGGGCTACCCTTGACTCACCTCTCGAGATATAA

Protein sequence

MGCAYGKLTLVKAEFMVDNGCRKRMSCSRFAPDVMARLALSHSRDSDRGAANTNSLVGSDRDFYKDLSTHSSYSKSKSRPAWGGLGKITRIGVVVAYPGAAALGHPIPLLSFPADLTSRAAPSCSGSSDERSSSDSEKSVKRGATLDSPLEI
Homology
[Close]
BLAST of CaUC01G010500 vs. NCBI nr
Match: KAF8364969.1 (hypothetical protein HHK36_033064 [Tetracentron sinense] >KAF8376903.1 hypothetical protein HHK36_031424 [Tetracentron sinense])

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-17
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0 

Query: 96  AYPGAAALGHPIPLLSFPADLTSRAAPSCSGSSDERSSSDSEKSVKRGATLDSPLEI 153
           AYPGAAALGHPIPLLSF ADLTSRAAPSCSGSSDERSS DSEKSVKR ATLDSPL +
Sbjct: 20  AYPGAAALGHPIPLLSFAADLTSRAAPSCSGSSDERSSPDSEKSVKREATLDSPLSL 76

[Close]
BLAST of CaUC01G010500 vs. NCBI nr
Match: KAG6601734.1 (hypothetical protein SDJN03_06967, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-14
Identity = 55/78 (70.51%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 71  SSYSKSKSRPAWGGLGKITRIGVVVAYPGAAALGHPIPLLSFPADLTSRAAPSCSGSSDE 130
           SS+S S S      L K   +    AYPGAA LGHPI LLSFPADLTSRA  SCSGSSDE
Sbjct: 11  SSWSFSSSFCLCPALVKKRCVCFFKAYPGAATLGHPILLLSFPADLTSRAGSSCSGSSDE 70

Query: 131 RSSSDSEKSVKRGATLDS 149
           RSSSDSEKSVKRGATL S
Sbjct: 71  RSSSDSEKSVKRGATLSS 88

[Close]
BLAST of CaUC01G010500 vs. NCBI nr
Match: RVW31126.1 (hypothetical protein CK203_117313 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 99  GAAALGHPIPLLSFPADLTSRAAPSCSGSSDERSSSDSEKSVK 142
           GAAALGHPIPLL F  DLT R APSCSGS +ERSSSDSEKS K
Sbjct: 56  GAAALGHPIPLLYFAIDLTLRVAPSCSGSLNERSSSDSEKSRK 98

[Close]
BLAST of CaUC01G010500 vs. ExPASy TrEMBL
Match: F6I3J9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0092g00760 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-18
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 90  RIGVVVAYPGAAALGHPIPLLSFPADLTSRAAPSCSGSSDERSSSDSEKSVKRGATLDSP 149
           R G   AYPGAAALGHPIPLLSF ADLTSRAAPSCSGSSDERSSSDSEKSVKR ATLDSP
Sbjct: 28  RRGNTKAYPGAAALGHPIPLLSFAADLTSRAAPSCSGSSDERSSSDSEKSVKREATLDSP 87

Query: 150 L 151
           L
Sbjct: 88  L 88

[Close]
BLAST of CaUC01G010500 vs. ExPASy TrEMBL
Match: A0A438D6S1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_117313 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 99  GAAALGHPIPLLSFPADLTSRAAPSCSGSSDERSSSDSEKSVK 142
           GAAALGHPIPLL F  DLT R APSCSGS +ERSSSDSEKS K
Sbjct: 56  GAAALGHPIPLLYFAIDLTLRVAPSCSGSLNERSSSDSEKSRK 98

The following BLAST results are available for this feature:
BLAST of CaUC01G010500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF8364969.18.4e-1791.23hypothetical protein HHK36_033064 [Tetracentron sinense] >KAF8376903.1 hypotheti... [more]
KAG6601734.13.9e-1470.51hypothetical protein SDJN03_06967, partial [Cucurbita argyrosperma subsp. sorori... [more]
RVW31126.12.3e-0681.40hypothetical protein CK203_117313 [Vitis vinifera][more]
BLAST of CaUC01G010500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G010500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
F6I3J98.2e-1890.16Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0092g00760 PE=4 SV=... [more]
A0A438D6S11.1e-0681.40Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_117313 PE=4 SV=1[more]
BLAST of CaUC01G010500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G010500.1CaUC01G010500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion