CaUC01G009620 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G009620
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein PHLOEM PROTEIN 2-LIKE A1
Location	Ciama_Chr01: 12205941 .. 12206204 (-)
RNA-Seq Expression	CaUC01G009620
Synteny	CaUC01G009620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTAAACTTATAGCAGCATGTTGTGTTGATGTTCGTGGATCAGTGAAGGCATCTTTGTTCTCTCCAAACGTATTATATTTAGTAGCATTTGTGGTATCACTCACTGAAGATGCCTACAGATGGAATGTTCCTGTGAACGTGGTACTGAAGAAGCCAAATGGGAGGAAGATAGAGAGCAAAATAAGCCTAGTGGGGAAGCCAAAAGGGGAGTTTTTCGAGGTAGATGCGGGAGAACTCATACTCGTGATATCGGCGTGA

mRNA sequence

ATGGCTGCTAAACTTATAGCAGCATGTTGTGTTGATGTTCGTGGATCAGTGAAGGCATCTTTGTTCTCTCCAAACGTATTATATTTAGTAGCATTTGTGGTATCACTCACTGAAGATGCCTACAGATGGAATGTTCCTGTGAACGTGGTACTGAAGAAGCCAAATGGGAGGAAGATAGAGAGCAAAATAAGCCTAGTGGGGAAGCCAAAAGGGGAGTTTTTCGAGGTAGATGCGGGAGAACTCATACTCGTGATATCGGCGTGA

Coding sequence (CDS)

ATGGCTGCTAAACTTATAGCAGCATGTTGTGTTGATGTTCGTGGATCAGTGAAGGCATCTTTGTTCTCTCCAAACGTATTATATTTAGTAGCATTTGTGGTATCACTCACTGAAGATGCCTACAGATGGAATGTTCCTGTGAACGTGGTACTGAAGAAGCCAAATGGGAGGAAGATAGAGAGCAAAATAAGCCTAGTGGGGAAGCCAAAAGGGGAGTTTTTCGAGGTAGATGCGGGAGAACTCATACTCGTGATATCGGCGTGA

Protein sequence

MAAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESKISLVGKPKGEFFEVDAGELILVISA

Homology

[Close]

BLAST of CaUC01G009620 vs. NCBI nr
Match: WP_219729244.1 (PP2 domain-containing protein, partial [Pectobacterium odoriferum] >POE05059.1 hypothetical protein BV921_23310, partial [Pectobacterium odoriferum])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1   MAAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIE 60
           + A LI     DVRGSVKASL S  +LYLVAFVV   EDA+ W+VPVN+VLKKPNG KIE
Sbjct: 105 LLAVLIKVNWFDVRGSVKASLLSSRILYLVAFVVYFNEDAHGWHVPVNLVLKKPNGCKIE 164

Query: 61  SKISLVGKPKGEFFEVDAGELIL 84
           SK+++ GKPKGE+FEVDAGELIL
Sbjct: 165 SKVNIEGKPKGEYFEVDAGELIL 187

[Close]

BLAST of CaUC01G009620 vs. NCBI nr
Match: WP_181002512.1 (PP2 domain-containing protein, partial [Pectobacterium odoriferum] >POE16080.1 hypothetical protein BV923_23560, partial [Pectobacterium odoriferum])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1   MAAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIE 60
           + A LI     DVRGSVKASL S  +LYLVAFVV   EDA+ W+VPVN+VLKKPNG KIE
Sbjct: 49  LLAVLIKVNWFDVRGSVKASLLSSRILYLVAFVVYFNEDAHGWHVPVNLVLKKPNGCKIE 108

Query: 61  SKISLVGKPKGEFFEVDAGELIL 84
           SK+++ GKPKGE+FEVDAGELIL
Sbjct: 109 SKVNIEGKPKGEYFEVDAGELIL 131

[Close]

BLAST of CaUC01G009620 vs. NCBI nr
Match: XP_038893562.1 (lectin-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2   AAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIES 61
           A +LI     D+ GSVKAS  S  V+YLVAF+V LTEDA  WN  VN+ +KKPNG  +E+
Sbjct: 101 APQLIQVSWFDIHGSVKASWLSSRVVYLVAFLVMLTEDASGWNHHVNLTIKKPNGCTVET 160

Query: 62  KISLVGKPKGEFFEVDAGELIL 84
           K+SL GKPKGEFFEV AG+ IL
Sbjct: 161 KVSLEGKPKGEFFEVWAGDFIL 182

[Close]

BLAST of CaUC01G009620 vs. NCBI nr
Match: AAA92465.1 (phloem protein 2 [Cucurbita argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+LI    +D+RG +K S+ SPN++Y VA  V L   A  WN P+N+ LKKPNG KIE +
Sbjct: 96  AELIQVSWLDIRGKIKESMLSPNIVYEVALQVQLNSGASGWNHPMNIELKKPNGSKIERQ 155

Query: 63  ISLVGKPKGEFFEV 77
             L+GKPK ++FE+
Sbjct: 156 ECLLGKPKNQWFEI 169

[Close]

BLAST of CaUC01G009620 vs. NCBI nr
Match: AAA33118.1 (phloem protein 2 [Cucurbita argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+LI    +D+RG +K S+ SPN++Y VA  V L   A  WN P+N+ LKKPNG KIE +
Sbjct: 96  AELIQVSWLDIRGKIKESMLSPNIVYEVALQVQLNSGASGWNHPMNIELKKPNGSKIERQ 155

Query: 63  ISLVGKPKGEFFEV 77
             L+GKPK ++FE+
Sbjct: 156 ECLLGKPKNQWFEI 169

[Close]

BLAST of CaUC01G009620 vs. ExPASy Swiss-Prot
Match: C0HJV2 (Lectin OS=Luffa acutangula OX=56866 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+LI  C +++ G+++ S+ SP + Y  AF V LT  A  W +PV+V LK P+G + ES+
Sbjct: 95  AELIDVCWLNIVGNIETSVLSPGISYEAAFEVMLTNSASGWRIPVDVKLKMPDGSEQESQ 154

Query: 63  ISLVGKPKGEFFEVDAG 80
           ++L  KP+G +F +  G
Sbjct: 155 VNLQDKPRGVWFFISVG 171

[Close]

BLAST of CaUC01G009620 vs. ExPASy Swiss-Prot
Match: O81865 (Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana OX=3702 GN=PP2A1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 2   AAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRK--I 61
           A  L   C +D+ G       +P ++Y V F V L + AY W+ PVN+ L  PNG++   
Sbjct: 128 AVGLKNVCWLDITGKFDTRNLTPGIVYEVVFKVKLEDPAYGWDTPVNLKLVLPNGKEKPQ 187

Query: 62  ESKISLVGKPKGEFFEVDAGELI 83
           E K+SL   P+ ++ +V  GE +
Sbjct: 188 EKKVSLRELPRYKWVDVRVGEFV 210

[Close]

BLAST of CaUC01G009620 vs. ExPASy Swiss-Prot
Match: Q9C8U9 (Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 OS=Arabidopsis thaliana OX=3702 GN=PP2A4 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 29/86 (33.72%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 2   AAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIES 61
           AA L A C +DV G       +    Y V +VV L + A  WN+PVN+ L  P+G+K   
Sbjct: 47  AAVLEAVCWLDVNGKFDTRELTLETTYEVVYVVKLEDTASGWNIPVNLKLTLPDGKKRPQ 106

Query: 62  KISL-----VGKPKGEFFEVDAGELI 83
           + S+     +GK    + ++ AGE +
Sbjct: 107 ERSMCLKEHIGK---RWIDISAGEFV 129

[Close]

BLAST of CaUC01G009620 vs. ExPASy Swiss-Prot
Match: P0DSP5 (Lectin OS=Coccinia grandis OX=387127 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+L      D R +V  +    NV Y V   V +   A  WN P+N+ L+ PNG K  S+
Sbjct: 44  AQLSRVSWFDCRWTVNTTDLKTNVWYNVFLKVQMGSGASGWNTPLNLELEMPNGSKQASQ 103

Query: 63  ISLVGKPKGEFFEVDAGELIL 84
           + L  +P+  +F++  G L++
Sbjct: 104 VVLNDRPRDVWFKLQMGNLMV 124

[Close]

BLAST of CaUC01G009620 vs. ExPASy TrEMBL
Match: Q39462 (Phloem protein 2 OS=Cucurbita argyrosperma OX=34294 GN=PP2 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+LI    +D+RG +K S+ SPN++Y VA  V L   A  WN P+N+ LKKPNG KIE +
Sbjct: 96  AELIQVSWLDIRGKIKESMLSPNIVYEVALQVQLNSGASGWNHPMNIELKKPNGSKIERQ 155

Query: 63  ISLVGKPKGEFFEV 77
             L+GKPK ++FE+
Sbjct: 156 ECLLGKPKNQWFEI 169

[Close]

BLAST of CaUC01G009620 vs. ExPASy TrEMBL
Match: Q39461 (Phloem protein 2 OS=Cucurbita argyrosperma OX=34294 GN=PP2 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+LI    +D+RG +K S+ SPN++Y VA  V L   A  WN P+N+ LKKPNG KIE +
Sbjct: 96  AELIQVSWLDIRGKIKESMLSPNIVYEVALQVQLNSGASGWNHPMNIELKKPNGSKIERQ 155

Query: 63  ISLVGKPKGEFFEV 77
             L+GKPK ++FE+
Sbjct: 156 ECLLGKPKNQWFEI 169

[Close]

BLAST of CaUC01G009620 vs. ExPASy TrEMBL
Match: A0A6J1EHQ4 (lectin-like OS=Cucurbita moschata OX=3662 GN=LOC111434188 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+LI    +D+RG +K  + SPN++Y+VA  V L   A  WN+P+N+ LKKP+G KIE +
Sbjct: 98  AELIQVSWLDIRGKIKEFMLSPNIVYVVALEVQLNSGASGWNLPMNIELKKPDGSKIERQ 157

Query: 63  ISLVGKPKGEFFEV 77
             L+GKPK ++FE+
Sbjct: 158 ECLLGKPKNQWFEI 171

[Close]

BLAST of CaUC01G009620 vs. ExPASy TrEMBL
Match: A0A7N0ZZS2 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 4   KLIAACCVDVRGSVKASLFSPNVLYLVAFVVSL-TEDAYRWNVPVNVVLKKPNGRKIESK 63
           KL   C ++V G  + S  SPNV+Y VAF+V +  E AY W VPVN  L+ PNG K ESK
Sbjct: 116 KLENVCWLEVHGKFEMSKLSPNVVYEVAFIVKIVAESAYGWEVPVNFRLRLPNGSKQESK 175

Query: 64  ISLVGKPKGEFFEVDAGE 81
           I+L+ KP+G++ +V AGE
Sbjct: 176 INLMEKPRGQWIKVPAGE 193

[Close]

BLAST of CaUC01G009620 vs. ExPASy TrEMBL
Match: Q8LK67 (Phloem lectin OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=PP2 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-11
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 3   AKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIESK 62
           A+LI    +D+RG +  S+ SPN++Y VA  V L   A  WN P+N+ LKKPNG KIE +
Sbjct: 96  AELIQVSWLDIRGKINESMLSPNIVYEVALQVQLNSGASGWNHPMNIELKKPNGSKIERQ 155

Query: 63  ISLVGKPKGEFFEV 77
             L+GKPK ++FE+
Sbjct: 156 ECLLGKPKNQWFEI 169

[Close]

BLAST of CaUC01G009620 vs. TAIR 10
Match: AT4G19840.1 (phloem protein 2-A1 )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 2   AAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRK--I 61
           A  L   C +D+ G       +P ++Y V F V L + AY W+ PVN+ L  PNG++   
Sbjct: 128 AVGLKNVCWLDITGKFDTRNLTPGIVYEVVFKVKLEDPAYGWDTPVNLKLVLPNGKEKPQ 187

Query: 62  ESKISLVGKPKGEFFEVDAGELI 83
           E K+SL   P+ ++ +V  GE +
Sbjct: 188 EKKVSLRELPRYKWVDVRVGEFV 210

[Close]

BLAST of CaUC01G009620 vs. TAIR 10
Match: AT1G33920.1 (phloem protein 2-A4 )

HSP 1 Score: 47.0 bits (110), Expect = 9.1e-06
Identity = 29/86 (33.72%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 2   AAKLIAACCVDVRGSVKASLFSPNVLYLVAFVVSLTEDAYRWNVPVNVVLKKPNGRKIES 61
           AA L A C +DV G       +    Y V +VV L + A  WN+PVN+ L  P+G+K   
Sbjct: 47  AAVLEAVCWLDVNGKFDTRELTLETTYEVVYVVKLEDTASGWNIPVNLKLTLPDGKKRPQ 106

Query: 62  KISL-----VGKPKGEFFEVDAGELI 83
           + S+     +GK    + ++ AGE +
Sbjct: 107 ERSMCLKEHIGK---RWIDISAGEFV 129

The following BLAST results are available for this feature:

BLAST of CaUC01G009620 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_219729244.1	1.4e-21	69.88	PP2 domain-containing protein, partial [Pectobacterium odoriferum] >POE05059.1 h...	[more]
WP_181002512.1	1.4e-21	69.88	PP2 domain-containing protein, partial [Pectobacterium odoriferum] >POE16080.1 h...	[more]
XP_038893562.1	1.8e-16	60.98	lectin-like [Benincasa hispida]	[more]
AAA92465.1	2.3e-11	50.00	phloem protein 2 [Cucurbita argyrosperma]	[more]
AAA33118.1	2.3e-11	50.00	phloem protein 2 [Cucurbita argyrosperma]	[more]

BLAST of CaUC01G009620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0HJV2	1.2e-10	40.26	Lectin OS=Luffa acutangula OX=56866 PE=1 SV=1	[more]
O81865	1.8e-06	34.94	Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana OX=3702 GN=PP2A1 PE=2 S...	[more]
Q9C8U9	1.3e-04	33.72	Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 OS=Arabidopsis thaliana OX=3702...	[more]
P0DSP5	1.7e-04	32.10	Lectin OS=Coccinia grandis OX=387127 PE=1 SV=1	[more]

BLAST of CaUC01G009620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q39462	1.1e-11	50.00	Phloem protein 2 OS=Cucurbita argyrosperma OX=34294 GN=PP2 PE=2 SV=1	[more]
Q39461	1.1e-11	50.00	Phloem protein 2 OS=Cucurbita argyrosperma OX=34294 GN=PP2 PE=2 SV=1	[more]
A0A6J1EHQ4	2.5e-11	47.30	lectin-like OS=Cucurbita moschata OX=3662 GN=LOC111434188 PE=4 SV=1	[more]
A0A7N0ZZS2	3.3e-11	51.28	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
Q8LK67	4.3e-11	48.65	Phloem lectin OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=PP2 PE=2 SV=1	[more]

BLAST of CaUC01G009620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19840.1	1.3e-07	34.94	phloem protein 2-A1	[more]
AT1G33920.1	9.1e-06	33.72	phloem protein 2-A4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025886	Phloem protein 2-like	PFAM	PF14299	PP2	coord: 2..81 e-value: 2.0E-8 score: 34.4
None	No IPR available	PANTHER	PTHR32278:SF42	PROTEIN PHLOEM PROTEIN 2-LIKE A2	coord: 2..82
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 2..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G009620.1	CaUC01G009620.1	mRNA