CaUC01G009610 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G009610
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	Ciama_Chr01: 12115661 .. 12118427 (-)
RNA-Seq Expression	CaUC01G009610
Synteny	CaUC01G009610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTAAGTCATCCTCTTCATCGGCCAAACGCCCCCCAAAAAGCATAGTGATTTTATGAGCGCCACAGCGAGAGGACGTAAACGAAAATACATGGTTCTGAAACGAAGATTTCTTTCTTCCGAGTTATCAATTTAACGATAATCTCCTTCTTAATCAGGTTCTTTCGATACTTTTTCCTCTTAGAAATTAGTACTACTCTCTCTTGTTGATATTTCTTTGATGAATGTGCATTTTTCCCCTTCTAGTAAGAGCGAATCGATACCCTTTGGAATGATTTATATGTAAATCACGAATGTTTGCATTTCGGGAAATTCATTTGTCTCAACTCGATGTCTATGTCGAGTATTCGTTATTTGATATTCCCATATGCTGTAGGATTAACCGAGTTGAGGGAAATGTGGATAGATTTTATCTTTCTTTTTCGTTTTGTTTTTCCCTCTTCTCCTCTGTTTTTGGTTTGGGAATTGAGTTTTATACTCTTCTGTGTGCATCTTGCTTAGAATGATGATTGAGTAGTGAATTTCTTGAAAACAGATTACGGCTGAAAGATATGGTGTTGTCGGAGGAGGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGAACAATTTAAGAAGAAGTTCGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGGTATAGTCTCATACTATACAATGATAATATCATTTATTTAGGCTGCTTTTGATTACTATTTACTTTTCGGTTTTTTAGTTTCTGAAAATTGTGTTTGTTGTTCTTATCCAAAAAAAGAAAATTGTGTTTGTTGTTTCCCAACTTATTTACCATGATTTTCATTTTCTTAGGTAAACATTTGAATTGTTAGCAAGTTCCAACAACAAAAAAATAAGTTTTTAAAAACTACTTTTCTTTAGTTTTCAAAACTTTATTTAGATTTTGAAAACTCGCAATTAGTTGTGTATTTGAACATGTTTAAACTTTACCTTGTTAAAATGTTGCAGCAAAATTTCCTCAGGAGAAGTTTCTATTTGAGTCATTCTCATGTACTTTGACATGAAAAATACTTAACCATCGATCATTGAGTAGTATATAATATTATTTGATAAATTTTTCCAAAACTTTTATGAAGTTTGGTTACAGGGATGTACAGGTTATTTGTTAACCTTTTTATTTATTCCCCTCCTTTTATTTATGACTCTTTTACACAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTCGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAATTTGACCCCCTTTGCTCGTACTTCTATAGGCGAAATATCTTCTAAAGTCCATTTGGAGGTTTTCCAGGTAAAAGTTAAATCTGTAAATAGTTTCTGGAGTCTTTTAATGTCGGATAGAATACAGTAATATTATCATATGCTACAAATTTGATGAGAAATAGAGAGGATGGAAAGAGCCATTTGGTGTCGCTTGCAAATGACTGATCAAATATAATTTATAATACTGAAGTCTACTACTACTACAAGGGCATAGCAATAGTGACAAGTCTGGGTTAAAGAATGGTAATGTTAGTTTGTAATTACTTATGTGATTTCCATTGTCCACATAATTATGCCTACATTCTTATTTTACTAAAGTTAATGTTACCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCTGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATCTTTTTTTCTTGAAATACACGAACTTTGTGAGAATTTATCTTTCATAAACATGTTGAAATAACCTTTGTAGATTGGCCCTGGGTGGATAAGGGCTACGTAAATAATGTGGGTTTTAGGGAATAAGTTTAAGCAATGATGATCACCTACCTAAGATTTAATATCCTACAAGTTACATTGACAATCAAATATCGTAGGGTTAGGCAGTTGTTTCGTTTGAATAGTCGAGATGTGCACAAGTTGGGTTTGACACTCTTGGATACATATTTAAATGTGTTTCTGTTAGTTCCTAAAGTGATTTTGTATTTTTTCTCAGCTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTCTGAGGTCTATCTGATTACAGCAATTGAAGTCATGGTACCTGCCTACTTGGAAGTGTGGAAGTGGTTTTTGAGATTTTGGCAATTCTCCTGTATGAGCTCAAACTTGGGAATTTTTGTATTTAGAATATAGATAGAACATCCTTAAGTGGTTTCTATATTCCTTCATTCACTCACAAGCATGTTTATTGAGGCTTCTGGTGACGAAGAAAGTCGATGAACTACGAGTTTATCCATTGGATCTTTTTGGTTGATCTTTCATTGCTAAAATAGTTTCTTGTTGTGTGGTTAATGAGCATTTTGAGGAGCCTGCTTCATCTGGACTGTTGAGGCTTTAGGTTTGAGATGACAATGCTGATTTTTTAGGCTTAATTATATTTAGATTTGGTGACACTTTCATATCATCACTAATGGATTCC

mRNA sequence

AAAATTAAGTCATCCTCTTCATCGGCCAAACGCCCCCCAAAAAGCATAGTGATTTTATGAGCGCCACAGCGAGAGGACGTAAACGAAAATACATGGTTCTGAAACGAAGATTTCTTTCTTCCGAGTTATCAATTTAACGATAATCTCCTTCTTAATCAGATTACGGCTGAAAGATATGGTGTTGTCGGAGGAGGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGAACAATTTAAGAAGAAGTTCGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGGAGAAGTTTCTATTTGAGTCATTCTCATGGATGTACAGGTTATTTGTTAACCTTTTTATTTATTCCCCTCCTTTTATTTATGACTCTTTTACACAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTCGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAATTTGACCCCCTTTGCTCGTACTTCTATAGGCGAAATATCTTCTAAAGTCCATTTGGAGGTTTTCCAGGTAAAAGTTAAATCTGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCTGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTCTGAGGTCTATCTGATTACAGCAATTGAAGTCATGGTACCTGCCTACTTGGAAGTGTGGAAGTGGTTTTTGAGATTTTGGCAATTCTCCTGTATGAGCTCAAACTTGGGAATTTTTGTATTTAGAATATAGATAGAACATCCTTAAGTGGTTTCTATATTCCTTCATTCACTCACAAGCATGTTTATTGAGGCTTCTGGTGACGAAGAAAGTCGATGAACTACGAGTTTATCCATTGGATCTTTTTGGTTGATCTTTCATTGCTAAAATAGTTTCTTGTTGTGTGGTTAATGAGCATTTTGAGGAGCCTGCTTCATCTGGACTGTTGAGGCTTTAGGTTTGAGATGACAATGCTGATTTTTTAGGCTTAATTATATTTAGATTTGGTGACACTTTCATATCATCACTAATGGATTCC

Coding sequence (CDS)

ATGGTGTTGTCGGAGGAGGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGAACAATTTAAGAAGAAGTTCGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGGAGAAGTTTCTATTTGAGTCATTCTCATGGATGTACAGGTTATTTGTTAACCTTTTTATTTATTCCCCTCCTTTTATTTATGACTCTTTTACACAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTCGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAATTTGACCCCCTTTGCTCGTACTTCTATAGGCGAAATATCTTCTAAAGTCCATTTGGAGGTTTTCCAGGTAAAAGTTAAATCTGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCTGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTCTGA

Protein sequence

MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

[Close]

BLAST of CaUC01G009610 vs. NCBI nr
Match: XP_018829461.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829463.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829464.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_041001822.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001823.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001824.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >KAF5451447.1 hypothetical protein F2P56_026555 [Juglans regia])

HSP 1 Score: 337.8 bits (865), Expect = 7.7e-89
Identity = 180/243 (74.07%), Postives = 197/243 (81.07%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           M LSEEEIT+LFR+R+TV+QMLKDRGYFVGDFE+DM++EQFK K+GESMKREDLVINKS 
Sbjct: 1   MTLSEEEITRLFRIRRTVMQMLKDRGYFVGDFEIDMTKEQFKNKYGESMKREDLVINKSK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RNNSSD                                QIYIFFPEEPKVG+KT+ TY +
Sbjct: 61  RNNSSD--------------------------------QIYIFFPEEPKVGVKTMKTYSQ 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMKSENVFRAILVVQQNLTPFAR+SI EIS+K HLEVFQ     EAEL++NIK HVL+PE
Sbjct: 121 RMKSENVFRAILVVQQNLTPFARSSINEISTKFHLEVFQ-----EAELLINIKEHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQVLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. NCBI nr
Match: XP_038895255.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895256.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895258.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895259.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida])

HSP 1 Score: 337.4 bits (864), Expect = 1.0e-88
Identity = 188/243 (77.37%), Postives = 195/243 (80.25%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEITKLFRVRKTVLQMLKDRGYFVGD EL MSREQFK KFGESMKREDLVINKS 
Sbjct: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDSELAMSREQFKYKFGESMKREDLVINKSK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RNNSS+                                QIYIFFPEEPKVGIKT+ TY  
Sbjct: 61  RNNSSE--------------------------------QIYIFFPEEPKVGIKTVQTYVN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMKSENV RA+LVVQQNLTPFART +GEISS+ HLEVFQ     EAELMVNIK+HVLIPE
Sbjct: 121 RMKSENVSRALLVVQQNLTPFARTKVGEISSQFHLEVFQ-----EAELMVNIKDHVLIPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ LTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG+KRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGMKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-88
Identity = 182/243 (74.90%), Postives = 197/243 (81.07%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVL+EEEIT+LFRVRKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ 
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RN+SSD                                QIYIFFPEEPKVG+KT+ TY  
Sbjct: 61  RNDSSD--------------------------------QIYIFFPEEPKVGVKTMKTYTN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMKSENVFRAILVVQQNLTPFART I EIS+K HLEVFQ     EAEL+VNIK+HVL+PE
Sbjct: 121 RMKSENVFRAILVVQQNLTPFARTCISEISTKFHLEVFQ-----EAELLVNIKDHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ L+NEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 5.0e-88
Identity = 180/243 (74.07%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ 
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RN+SSD                                QIY+FFPEE KVG+KT+ TY  
Sbjct: 61  RNDSSD--------------------------------QIYVFFPEEQKVGVKTMKTYTN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ     EAEL+VN+K+HVL+PE
Sbjct: 121 RMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQ-----EAELLVNVKDHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. NCBI nr
Match: XP_022953770.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata])

HSP 1 Score: 334.7 bits (857), Expect = 6.5e-88
Identity = 180/243 (74.07%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ 
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RN+SSD                                QIY+FFPEE KVG+KT+ TY  
Sbjct: 61  RNDSSD--------------------------------QIYVFFPEEQKVGVKTMKTYTN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ     EAEL+VN+K+HVL+PE
Sbjct: 121 RMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQ-----EAELLVNVKDHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.7e-78
Identity = 157/242 (64.88%), Postives = 185/242 (76.45%), Query Frame = 0


Query: 2   VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMR 61
           +L+EEE+ +L+R++KT++QML+DRGYF+ D EL M+++QF +K G++MKREDLV  K+ R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKKR 121
           N++SD                                Q+YIFFP+E KVG+KT+  Y  R
Sbjct: 61  NDNSD--------------------------------QLYIFFPDEAKVGVKTMKMYTNR 120

Query: 122 MKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEH 181
           MKSENVFRAILVVQQNLTPFART I EISSK HLEVFQ     EAE++VNIK HVL+PEH
Sbjct: 121 MKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQ-----EAEMLVNIKEHVLVPEH 180

Query: 182 QSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRY 241
           Q LT EEKKTLLERYTVKETQLPRIQVTDPIARY+GLKRGQVVKIIRPSETAGRYVTYRY
Sbjct: 181 QVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRY 205

Query: 242 VV 244
           VV
Sbjct: 241 VV 205

[Close]

BLAST of CaUC01G009610 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.4e-48
Identity = 108/243 (44.44%), Postives = 152/243 (62.55%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD + E+FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYK 124
             ++ +D                                Q+++FFPEEPKVGIKT+  Y 
Sbjct: 64  HNDDPTD--------------------------------QMFVFFPEEPKVGIKTIKVYC 123

Query: 125 KRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIP 184
           +RM+ EN+ RA++VVQQ +TP A+ S+ +++ K  LE F      + EL++NI  H L+P
Sbjct: 124 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQF-----LQQELLINITEHELVP 183

Query: 185 EHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTY 243
           EH  +T EE   LL RY ++E+QLPRIQ  DP+ARY+G+KRGQVVKIIRPSETAGRY+TY
Sbjct: 184 EHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITY 209

[Close]

BLAST of CaUC01G009610 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.4e-48
Identity = 108/243 (44.44%), Postives = 152/243 (62.55%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD + E+FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYK 124
             ++ +D                                Q+++FFPEEPKVGIKT+  Y 
Sbjct: 64  HNDDPTD--------------------------------QMFVFFPEEPKVGIKTIKVYC 123

Query: 125 KRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIP 184
           +RM+ EN+ RA++VVQQ +TP A+ S+ +++ K  LE F      + EL++NI  H L+P
Sbjct: 124 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQF-----LQQELLINITEHELVP 183

Query: 185 EHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTY 243
           EH  +T EE   LL RY ++E+QLPRIQ  DP+ARY+G+KRGQVVKIIRPSETAGRY+TY
Sbjct: 184 EHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITY 209

[Close]

BLAST of CaUC01G009610 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.3e-48
Identity = 115/248 (46.37%), Postives = 151/248 (60.89%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGE-----SMKREDLV 60
           M   E E  +L+R+RKTVLQM+ DRGY V   ELD   E FK+ FG+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60

Query: 61  INKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTL 120
           I  +  ++ +D                                Q+++FFPE+ K+GIKT+
Sbjct: 61  ILVAHNDDPAD--------------------------------QMFVFFPEDTKIGIKTI 120

Query: 121 DTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNH 180
               ++M+ +N+ RAI+VVQ  +TP A+ SIG+++ K  LE F      EAELMVNI  H
Sbjct: 121 KAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHF-----LEAELMVNITEH 180

Query: 181 VLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGR 240
            L+PEH  +T EEK  LL RY +K++QLPRIQ  DP+ARY+GL+RGQVVKIIRPSETAGR
Sbjct: 181 ELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGR 211

Query: 241 YVTYRYVV 244
           Y+TYR VV
Sbjct: 241 YITYRLVV 211

[Close]

BLAST of CaUC01G009610 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.9e-48
Identity = 107/243 (44.03%), Postives = 151/243 (62.14%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD + E+F+ +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYK 124
             ++ +D                                Q+++FFPEEPKVGIKT+  Y 
Sbjct: 64  HNDDPTD--------------------------------QMFVFFPEEPKVGIKTIKVYC 123

Query: 125 KRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIP 184
           +RM+ EN+ RA++VVQQ +TP A+ S+ +++ K  LE F      + EL++NI  H L+P
Sbjct: 124 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF-----LQQELLINITEHELVP 183

Query: 185 EHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTY 243
           EH  +T EE   LL RY ++E QLPRIQ  DP+ARY+G+KRGQVVKIIRPSETAGRY+TY
Sbjct: 184 EHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITY 209

[Close]

BLAST of CaUC01G009610 vs. ExPASy TrEMBL
Match: A0A2I4FCU5 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Juglans regia OX=51240 GN=LOC108997575 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.7e-89
Identity = 180/243 (74.07%), Postives = 197/243 (81.07%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           M LSEEEIT+LFR+R+TV+QMLKDRGYFVGDFE+DM++EQFK K+GESMKREDLVINKS 
Sbjct: 1   MTLSEEEITRLFRIRRTVMQMLKDRGYFVGDFEIDMTKEQFKNKYGESMKREDLVINKSK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RNNSSD                                QIYIFFPEEPKVG+KT+ TY +
Sbjct: 61  RNNSSD--------------------------------QIYIFFPEEPKVGVKTMKTYSQ 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMKSENVFRAILVVQQNLTPFAR+SI EIS+K HLEVFQ     EAEL++NIK HVL+PE
Sbjct: 121 RMKSENVFRAILVVQQNLTPFARSSINEISTKFHLEVFQ-----EAELLINIKEHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQVLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. ExPASy TrEMBL
Match: A0A6J1KT45 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497988 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 8.3e-89
Identity = 182/243 (74.90%), Postives = 197/243 (81.07%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVL+EEEIT+LFRVRKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ 
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RN+SSD                                QIYIFFPEEPKVG+KT+ TY  
Sbjct: 61  RNDSSD--------------------------------QIYIFFPEEPKVGVKTMKTYTN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMKSENVFRAILVVQQNLTPFART I EIS+K HLEVFQ     EAEL+VNIK+HVL+PE
Sbjct: 121 RMKSENVFRAILVVQQNLTPFARTCISEISTKFHLEVFQ-----EAELLVNIKDHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ L+NEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. ExPASy TrEMBL
Match: A0A6J1H699 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111460591 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 8.3e-89
Identity = 182/243 (74.90%), Postives = 197/243 (81.07%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVL+EEEIT+LFRVRKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ 
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RN+SSD                                QIYIFFPEEPKVG+KT+ TY  
Sbjct: 61  RNDSSD--------------------------------QIYIFFPEEPKVGVKTMKTYTN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMKSENVFRAILVVQQNLTPFART I EIS+K HLEVFQ     EAEL+VNIK+HVL+PE
Sbjct: 121 RMKSENVFRAILVVQQNLTPFARTCISEISTKFHLEVFQ-----EAELLVNIKDHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ L+NEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.4e-88
Identity = 180/243 (74.07%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ 
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RN+SSD                                QIY+FFPEE KVG+KT+ TY  
Sbjct: 61  RNDSSD--------------------------------QIYVFFPEEQKVGVKTMKTYTN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ     EAEL+VN+K+HVL+PE
Sbjct: 121 RMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQ-----EAELLVNVKDHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. ExPASy TrEMBL
Match: A0A6J1GQK9 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111456196 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 3.2e-88
Identity = 180/243 (74.07%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ 
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKK 120
           RN+SSD                                QIY+FFPEE KVG+KT+ TY  
Sbjct: 61  RNDSSD--------------------------------QIYVFFPEEQKVGVKTMKTYTN 120

Query: 121 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 180
           RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ     EAEL+VN+K+HVL+PE
Sbjct: 121 RMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQ-----EAELLVNVKDHVLVPE 180

Query: 181 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 240
           HQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYR
Sbjct: 181 HQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 206

Query: 241 YVV 244
           YVV
Sbjct: 241 YVV 206

[Close]

BLAST of CaUC01G009610 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 292.7 bits (748), Expect = 2.7e-79
Identity = 157/242 (64.88%), Postives = 185/242 (76.45%), Query Frame = 0


Query: 2   VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMR 61
           +L+EEE+ +L+R++KT++QML+DRGYF+ D EL M+++QF +K G++MKREDLV  K+ R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKKR 121
           N++SD                                Q+YIFFP+E KVG+KT+  Y  R
Sbjct: 61  NDNSD--------------------------------QLYIFFPDEAKVGVKTMKMYTNR 120

Query: 122 MKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEH 181
           MKSENVFRAILVVQQNLTPFART I EISSK HLEVFQ     EAE++VNIK HVL+PEH
Sbjct: 121 MKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQ-----EAEMLVNIKEHVLVPEH 180

Query: 182 QSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRY 241
           Q LT EEKKTLLERYTVKETQLPRIQVTDPIARY+GLKRGQVVKIIRPSETAGRYVTYRY
Sbjct: 181 QVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRY 205

Query: 242 VV 244
           VV
Sbjct: 241 VV 205

[Close]

BLAST of CaUC01G009610 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-38
Identity = 95/243 (39.09%), Postives = 145/243 (59.67%), Query Frame = 0


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESM---KREDLVINKSMR 64
           ++EIT++F+VR+TVLQML+DRGY + + +L++ RE+F ++F ++M    +E L ++ +  
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTL-DTYKK 124
            N +D                                +IY+F+PE PKVG+  +      
Sbjct: 65  PNPAD--------------------------------KIYVFYPEGPKVGVPVIKKEVAI 124

Query: 125 RMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPE 184
           +M+ + V R I+VV   +T  AR ++ E++  + +EVF+     EAEL+ NI  H L+ +
Sbjct: 125 KMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFE-----EAELVTNITEHKLVNK 184

Query: 185 HQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYR 244
           +  L ++ KK LL  YTV++TQLPRI VTDP+ARYYGLKRGQVVKI R   T+  Y TYR
Sbjct: 185 YYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYR 210

[Close]

BLAST of CaUC01G009610 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-24
Identity = 77/240 (32.08%), Postives = 125/240 (52.08%), Query Frame = 0


Query: 4   SEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNN 63
           S  E  K +  R+T ++ML+DRGY V D ++++S +QF+  +GE                
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPD------------- 76

Query: 64  SSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKKRMK 123
                              V+L   S    +DS  +I + F     V +  +      + 
Sbjct: 77  -------------------VDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVL 136

Query: 124 S-ENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQ 183
           S EN+   ILV+Q ++T  A  ++   S KV  E+F++      +L+VN+  HVL P+HQ
Sbjct: 137 SRENITGLILVLQSHITNQALKAVELFSFKV--ELFEI-----TDLLVNVSKHVLRPKHQ 196

Query: 184 SLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 243
            L ++EK++LL++++++E QLPR+   DPI RYYGL+ GQV+K+    E +  +VTYR V
Sbjct: 197 VLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of CaUC01G009610 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-22
Identity = 82/240 (34.17%), Postives = 124/240 (51.67%), Query Frame = 0


Query: 3   LSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRN 62
           LS EE  + +  R+  LQML+DRGY V D ++++S   F+  +GE    + L I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  NSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKKRM 122
           +S+ + K +F   S +    VN        + D  +Q                       
Sbjct: 80  DSTKKVKIVFFGTSMVK---VNAI---RSVVADILSQ----------------------- 139

Query: 123 KSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQ 182
             E +   ILV+Q ++T  A  +I   S KV  E+FQ+      +L+VNI  H L P+HQ
Sbjct: 140 --ETITGLILVLQNHVTNQALKAIELFSFKV--EIFQI-----TDLLVNITKHSLKPQHQ 199

Query: 183 SLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 242
            L +EEK TLL++++++E QLPRI   D I RYYGL++GQVVK+    E    +V +R V
Sbjct: 200 VLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of CaUC01G009610 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-18
Identity = 72/237 (30.38%), Postives = 115/237 (48.52%), Query Frame = 0


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSD 66
           E  + +  R T  +ML+DRGY V + EL ++  +F+  FGE  + E L I   +R  S  
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLR--SDP 94

Query: 67  QEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPEEPKVGIKTLDTYKKRMKSEN 126
           ++K L             +F+ + P    S   ++I       VG+  +           
Sbjct: 95  KKKILV------------VFMGTEPITVKSVRALHIQISN--NVGLHAM----------- 154

Query: 127 VFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTN 186
               ILV+Q  +  FA+ ++      V  E F ++     +L+VNI  H+  P+ + L  
Sbjct: 155 ----ILVLQSKMNHFAQKALTTFPFTV--ETFPIE-----DLLVNITKHIQQPKIEILNK 214

Query: 187 EEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 244
           EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ QVVKI    E  G +VTYR ++
Sbjct: 215 EEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of CaUC01G009610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018829461.1	7.7e-89	74.07	DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_01882...	[more]
XP_038895255.1	1.0e-88	77.37	DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_0...	[more]
XP_022959553.1	1.7e-88	74.90	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_022991826.1	5.0e-88	74.07	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02...	[more]
XP_022953770.1	6.5e-88	74.07	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]	[more]

BLAST of CaUC01G009610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	3.7e-78	64.88	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	2.4e-48	44.44	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	2.4e-48	44.44	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
A8XGH1	5.3e-48	46.37	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
Q5R587	6.9e-48	44.03	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]

BLAST of CaUC01G009610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I4FCU5	3.7e-89	74.07	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Juglans regia OX=51240...	[more]
A0A6J1KT45	8.3e-89	74.90	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1H699	8.3e-89	74.90	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1JRV4	2.4e-88	74.07	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1GQK9	3.2e-88	74.07	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]

BLAST of CaUC01G009610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	2.7e-79	64.88	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.0e-38	39.09	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	5.4e-24	32.08	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	1.0e-22	34.17	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	3.4e-18	30.38	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 68..243 e-value: 3.7E-63 score: 210.7 coord: 1..79 e-value: 1.3E-14 score: 52.1
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 170..242 e-value: 1.7E-33 score: 114.3
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 3..167 e-value: 3.5E-39 score: 136.0
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..171
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..122 e-value: 1.3E-25 score: 89.8
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 168..243 e-value: 1.1E-33 score: 116.7
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 168..243
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..72
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 96..243
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 96..243
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..72
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 170..243 score: 22.154484

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G009610.1	CaUC01G009610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity