CaUC01G009480 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G009480
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	photosystem I subunit F
Location	Ciama_Chr01: 11691676 .. 11692350 (+)
RNA-Seq Expression	CaUC01G009480
Synteny	CaUC01G009480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGCTCCCCATTCCCCTTAAAACCAAAACCCTCTTCATCAATCCTCTGCTCCGCCACTCATAATCAAGATCAAAACCCTTCATCTTCTCTTCAGGCCTTCTCCGCCGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGTTGCCGACATCTCCGGCCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTCAGTCTTCTTTGAAGAATTACGCCCCCGACAGCGCTCCGGCGCTTGCTCTGAAAGCCACGGTTGAGAAGACGAAGAGACGATTCGCATTTTATGGGAATCAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTGCCTTTGGCTACCGGTTTGGTCTTCAGAGGCTTTAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAGGATGTCTAA

mRNA sequence

ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGCTCCCCATTCCCCTTAAAACCAAAACCCTCTTCATCAATCCTCTGCTCCGCCACTCATAATCAAGATCAAAACCCTTCATCTTCTCTTCAGGCCTTCTCCGCCGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGTTGCCGACATCTCCGGCCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTCAGTCTTCTTTGAAGAATTACGCCCCCGACAGCGCTCCGGCGCTTGCTCTGAAAGCCACGGTTGAGAAGACGAAGAGACGATTCGCATTTTATGGGAATCAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTGCCTTTGGCTACCGGTTTGGTCTTCAGAGGCTTTAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAGGATGTCTAA

Coding sequence (CDS)

ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGCTCCCCATTCCCCTTAAAACCAAAACCCTCTTCATCAATCCTCTGCTCCGCCACTCATAATCAAGATCAAAACCCTTCATCTTCTCTTCAGGCCTTCTCCGCCGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGTTGCCGACATCTCCGGCCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTCAGTCTTCTTTGAAGAATTACGCCCCCGACAGCGCTCCGGCGCTTGCTCTGAAAGCCACGGTTGAGAAGACGAAGAGACGATTCGCATTTTATGGGAATCAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTGCCTTTGGCTACCGGTTTGGTCTTCAGAGGCTTTAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAGGATGTCTAA

Protein sequence

MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV

Homology

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BLAST of CaUC01G009480 vs. NCBI nr
Match: XP_038895167.1 (photosystem I reaction center subunit III, chloroplastic [Benincasa hispida])

HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115
Identity = 216/224 (96.43%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPKLSSP P KPKPSSSILCSAT NQ+QNPSSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLPSKPKPSSSILCSATQNQNQNPSSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTK 120
           LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+SSLKNYAPDSAPALALKAT+EKTK
Sbjct: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALALKATIEKTK 120

Query: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIR 
Sbjct: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRG 180

Query: 181 DKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           DKKPTQKEIIIDVPLAT LVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 DKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

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BLAST of CaUC01G009480 vs. NCBI nr
Match: XP_004150631.1 (photosystem I reaction center subunit III, chloroplastic [Cucumis sativus] >KGN66911.1 hypothetical protein Csa_006875 [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 7.1e-113
Identity = 211/224 (94.20%), Postives = 217/224 (96.88%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPK SSP  LKPKPSSSILCSA+ NQ+QN SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQNQNTSSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTK 120
           LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+SSLKNYAPDSAPALA+KAT+EKTK
Sbjct: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEKTK 120

Query: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           +KKPTQKEIIIDVPLAT LVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 EKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

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BLAST of CaUC01G009480 vs. NCBI nr
Match: XP_008459076.1 (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis melo] >KAA0043281.1 photosystem I reaction center subunit III [Cucumis melo var. makuwa] >TYK29345.1 photosystem I reaction center subunit III [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 211/226 (93.36%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSA--THNQDQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSP  LKPKPSSSILCSA    NQ QNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+S+LKNYAPDSAPALA+KAT+EK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           R++KKPTQKEIIIDVPLAT LVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

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BLAST of CaUC01G009480 vs. NCBI nr
Match: XP_022994929.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita maxima])

HSP 1 Score: 402.1 bits (1032), Expect = 3.1e-108
Identity = 203/224 (90.62%), Postives = 213/224 (95.09%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPK SS    K +PSSSILCSAT NQ++  SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTK 120
           LLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKL+SSLKNYAPDSAPALA++A+VEKTK
Sbjct: 61  LLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTK 120

Query: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           DKKPTQKEIIIDVPLAT LVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 DKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 224

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BLAST of CaUC01G009480 vs. NCBI nr
Match: XP_023542340.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.6e-107
Identity = 204/227 (89.87%), Postives = 214/227 (94.27%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQD---QNPSSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS    K +PSSSILCSAT NQ+   +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKL+SSLKNYAPDSAPALA++A+VE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           IRDDKKPTQKEIIIDVPLAT LVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227

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BLAST of CaUC01G009480 vs. ExPASy Swiss-Prot
Match: Q9SHE8 (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAF PE=1 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 6.5e-85
Identity = 163/225 (72.44%), Postives = 185/225 (82.22%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLK-PKPSSSILCSATHNQDQNPSSSLQAFSAALALSS 60
           MSLTIP NL   +L P+ +       PK S+  +CS   +    P  S++AFSAA+ALSS
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTP-QSMKAFSAAVALSS 60

Query: 61  ILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKT 120
           ILLSAP+PAVADISGLTPCK+SKQFAKREKQQIKKL+SSLK YAP+SAPALAL A +EKT
Sbjct: 61  ILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKT 120

Query: 121 KRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIR 180
           KRRF  YG  GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIAI 
Sbjct: 121 KRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIS 180

Query: 181 DDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
            +KKP  KEIIIDVPLA+ ++FRGF WPVAAYRE +NG+LIAKDV
Sbjct: 181 GEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

[Close]

BLAST of CaUC01G009480 vs. ExPASy Swiss-Prot
Match: P46486 (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia OX=4227 GN=PSAF PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.1e-84
Identity = 172/228 (75.44%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKL-SSPFPLKPK-PSSSILCSATHNQDQNPS---SSLQAFSAAL 60
           MS TI T+  +PL    L SSP   K K  S+SI+CS + ++  N +   SSL+A SAAL
Sbjct: 1   MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAAL 60

Query: 61  ALSSILLSA---PLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALAL 120
           ALSSIL+S+    LPA ADISGLTPCKESKQFAKREKQ +KKL+SSLK YAPDSAPALA+
Sbjct: 61  ALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120

Query: 121 KATVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGR 180
           KAT+EKTKRRF  YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGR
Sbjct: 121 KATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGR 180

Query: 181 SYLIAIRDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELI 221
           SYLIAIRD+KKPTQKEIIIDVPLAT L+FRGFSWPVAAYRE +NGELI
Sbjct: 181 SYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228

[Close]

BLAST of CaUC01G009480 vs. ExPASy Swiss-Prot
Match: P12355 (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAF PE=1 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.7e-82
Identity = 165/229 (72.05%), Postives = 184/229 (80.35%), Query Frame = 0


Query: 1   MSLTIPTNLSKPL-LKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAF----SAAL 60
           MS TIPTNL KPL  KPK  S     P+  S I+C   ++Q Q     L       +AAL
Sbjct: 1   MSFTIPTNLYKPLATKPKHLSSSSFAPR--SKIVCQQENDQQQPKKLELAKVGANAAAAL 60

Query: 61  ALSSILLS----APLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALA 120
           ALSS+LLS    AP  A+ADI+GLTPCKESKQFAKREKQ +KKLQ+SLK YA DSAPALA
Sbjct: 61  ALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALA 120

Query: 121 LKATVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVG 180
           +KAT+EKTK+RF  YG  GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVG
Sbjct: 121 IKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVG 180

Query: 181 RSYLIAIRDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELI 221
           RSYLIAIRD+KKPTQKEIIIDVPLA+ L+FRGFSWPVAAYREL+NGEL+
Sbjct: 181 RSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227

[Close]

BLAST of CaUC01G009480 vs. ExPASy Swiss-Prot
Match: P13192 (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAF PE=1 SV=2)

HSP 1 Score: 284.6 bits (727), Expect = 9.4e-76
Identity = 146/219 (66.67%), Postives = 171/219 (78.08%), Query Frame = 0


Query: 15  KPKLSSPFPLKPKPSSSILCSATHNQDQNP------SSSLQAFSAALALSSILLS----A 74
           KP+LS     +P    S+ CSA+   + N       S+S++ FSAALALSS+LLS    +
Sbjct: 17  KPRLS-----RPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATS 76

Query: 75  PLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTKRRFA 134
           P PA ADI+GLTPCKESK FAKREKQ +KKL SSLK YAPDSAPALA++AT++KTKRRF 
Sbjct: 77  PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFE 136

Query: 135 FYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKP 194
            YG  GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLIA+  +KKP
Sbjct: 137 NYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKP 196

Query: 195 TQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKD 224
             +EIIIDV LA  ++ RGF WPVAAYREL+NG+L+  D
Sbjct: 197 AMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230

[Close]

BLAST of CaUC01G009480 vs. ExPASy Swiss-Prot
Match: P12356 (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=PSAF PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.4e-49
Identity = 108/211 (51.18%), Postives = 140/211 (66.35%), Query Frame = 0


Query: 17  KLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSILLSAPLPAVADISGLT 76
           K SS      + +  + C A  N+  +   +  A SA  A  ++ LSAP  A+ADI+GLT
Sbjct: 11  KASSRVAPSSRRALRVACQAQKNETASKVGTALAASALAA--AVSLSAPSAAMADIAGLT 70

Query: 77  PCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTKRRFAFYGNQGLLCGAD 136
           PC ESK +AK EK+++K L+  LK Y  DSAPA+ALKAT+E+TK RFA Y   GLLCG D
Sbjct: 71  PCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGND 130

Query: 137 GLPHLI----VSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIID 196
           GLPHLI    ++    H GE   P F FLY+AG+IG+VGR YLIA++ + KPT KEIIID
Sbjct: 131 GLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIID 190

Query: 197 VPLATGLVFRGFSWPVAAYRELVNGELIAKD 224
           VPLAT L ++G  WP+AA +EL  G L+ K+
Sbjct: 191 VPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219

[Close]

BLAST of CaUC01G009480 vs. ExPASy TrEMBL
Match: A0A0A0M3X2 (PSI-F OS=Cucumis sativus OX=3659 GN=Csa_1G714680 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.4e-113
Identity = 211/224 (94.20%), Postives = 217/224 (96.88%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPK SSP  LKPKPSSSILCSA+ NQ+QN SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQNQNTSSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTK 120
           LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+SSLKNYAPDSAPALA+KAT+EKTK
Sbjct: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEKTK 120

Query: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           +KKPTQKEIIIDVPLAT LVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 EKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

[Close]

BLAST of CaUC01G009480 vs. ExPASy TrEMBL
Match: A0A5D3E1S6 (PSI-F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00570 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.5e-112
Identity = 211/226 (93.36%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSA--THNQDQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSP  LKPKPSSSILCSA    NQ QNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+S+LKNYAPDSAPALA+KAT+EK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           R++KKPTQKEIIIDVPLAT LVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

[Close]

BLAST of CaUC01G009480 vs. ExPASy TrEMBL
Match: A0A1S3C8V6 (PSI-F OS=Cucumis melo OX=3656 GN=LOC103498296 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.5e-112
Identity = 211/226 (93.36%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSA--THNQDQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSP  LKPKPSSSILCSA    NQ QNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+S+LKNYAPDSAPALA+KAT+EK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           R++KKPTQKEIIIDVPLAT LVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

[Close]

BLAST of CaUC01G009480 vs. ExPASy TrEMBL
Match: A0A6J1K487 (PSI-F OS=Cucurbita maxima OX=3661 GN=LOC111490506 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.5e-108
Identity = 203/224 (90.62%), Postives = 213/224 (95.09%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPK SS    K +PSSSILCSAT NQ++  SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTK 120
           LLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKL+SSLKNYAPDSAPALA++A+VEKTK
Sbjct: 61  LLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTK 120

Query: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           DKKPTQKEIIIDVPLAT LVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 DKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 224

[Close]

BLAST of CaUC01G009480 vs. ExPASy TrEMBL
Match: A0A6J1GT12 (PSI-F OS=Cucurbita moschata OX=3662 GN=LOC111457171 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.8e-107
Identity = 203/227 (89.43%), Postives = 214/227 (94.27%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQD---QNPSSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS    K +PSSSILCSAT NQ+   +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKL+SSLKNYAPDSAPALA++A+VE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRDDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
           IRDDKKPTQKEIIIDVPLAT LVFRGFSWP+AAYRELVNG+LIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGDLIAKDV 227

[Close]

BLAST of CaUC01G009480 vs. TAIR 10
Match: AT1G31330.1 (photosystem I subunit F )

HSP 1 Score: 315.1 bits (806), Expect = 4.6e-86
Identity = 163/225 (72.44%), Postives = 185/225 (82.22%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLK-PKPSSSILCSATHNQDQNPSSSLQAFSAALALSS 60
           MSLTIP NL   +L P+ +       PK S+  +CS   +    P  S++AFSAA+ALSS
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTP-QSMKAFSAAVALSS 60

Query: 61  ILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKT 120
           ILLSAP+PAVADISGLTPCK+SKQFAKREKQQIKKL+SSLK YAP+SAPALAL A +EKT
Sbjct: 61  ILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKT 120

Query: 121 KRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIR 180
           KRRF  YG  GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIAI 
Sbjct: 121 KRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIS 180

Query: 181 DDKKPTQKEIIIDVPLATGLVFRGFSWPVAAYRELVNGELIAKDV 225
            +KKP  KEIIIDVPLA+ ++FRGF WPVAAYRE +NG+LIAKDV
Sbjct: 181 GEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

The following BLAST results are available for this feature:

BLAST of CaUC01G009480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895167.1	1.5e-115	96.43	photosystem I reaction center subunit III, chloroplastic [Benincasa hispida]	[more]
XP_004150631.1	7.1e-113	94.20	photosystem I reaction center subunit III, chloroplastic [Cucumis sativus] >KGN6...	[more]
XP_008459076.1	1.3e-111	93.36	PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis mel...	[more]
XP_022994929.1	3.1e-108	90.63	photosystem I reaction center subunit III, chloroplastic [Cucurbita maxima]	[more]
XP_023542340.1	2.6e-107	89.87	photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. ...	[more]

BLAST of CaUC01G009480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE8	6.5e-85	72.44	Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana...	[more]
P46486	1.1e-84	75.44	Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia O...	[more]
P12355	6.7e-82	72.05	Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX...	[more]
P13192	9.4e-76	66.67	Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4...	[more]
P12356	3.4e-49	51.18	Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinha...	[more]

BLAST of CaUC01G009480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3X2	3.4e-113	94.20	PSI-F OS=Cucumis sativus OX=3659 GN=Csa_1G714680 PE=3 SV=1	[more]
A0A5D3E1S6	6.5e-112	93.36	PSI-F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00570 PE=3 SV=...	[more]
A0A1S3C8V6	6.5e-112	93.36	PSI-F OS=Cucumis melo OX=3656 GN=LOC103498296 PE=3 SV=1	[more]
A0A6J1K487	1.5e-108	90.63	PSI-F OS=Cucurbita maxima OX=3661 GN=LOC111490506 PE=3 SV=1	[more]
A0A6J1GT12	2.8e-107	89.43	PSI-F OS=Cucurbita moschata OX=3662 GN=LOC111457171 PE=3 SV=1	[more]

BLAST of CaUC01G009480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31330.1	4.6e-86	72.44	photosystem I subunit F	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	GENE3D	1.10.8.110	Photosystem I PsaF, reaction centre subunit III	coord: 71..224 e-value: 6.5E-73 score: 245.4
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	SUPERFAMILY	81536	Subunit III of photosystem I reaction centre, PsaF	coord: 71..223
IPR003666	Photosystem I PsaF, reaction centre subunit III	PFAM	PF02507	PSI_PsaF	coord: 58..223 e-value: 2.0E-80 score: 268.6
IPR003666	Photosystem I PsaF, reaction centre subunit III	PANTHER	PTHR34939	PHOTOSYSTEM I REACTION CENTER SUBUNIT III, CHLOROPLASTIC	coord: 1..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G009480.1	CaUC01G009480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I