CaUC01G009070 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATCAAGTTACACAATCTTTTACATTCTATTTGAAAAAACGTCGTGTAAGATTTATAATTGTATCAATTAAACCCTTAAACTTGGAATCAATTTAAACACTTAGAATTTTCATTGAGAATCATCAATGCATTAATTCTAATTGTCTATTTTGTAAAACCGACAATTAAAGAAGCTTGCCCACAATTGAGAATTAAGGCATGAATGCTTTTTTAAGGTAAACGTAATGAAGAGTCTAAATATTGGGACTGATATGTCCTAAATCTCTTGGATCTTGTAGTTTTGTAAATTGTAAATACATTTTATTTATTGAACAAAATAAGAAGTTATTTTATCTGTCTTATGCATTAAACTCAATCTAATAAACTAAGATTCCATGGTTATTTTATGTAAACTTAAACATGTATGTGGTTGACATACAAGGTTGGATCATGTTGAAGTAATAACCAAAAGGTCTGTAGTATAGGAATAAGGTTGGGTGTCTTATTCTGGTAACACTACAAATATGACCCACTTTGTAATTGTTATAAGAAGTTGTAAAGTGTTACAAACGATTTGATCCTAATTGTTCATGTGGTAACATGTGAGTGGATATCATATGCAAAGAGTTTGTATAAGAGAACAAACTGCAAAATGTTTAATTTCTCTTTGTAACGCCATTAATTGTAGAAATTAACAGTTATAGGATAACTATAGGTAACTCGACTTGAATCCTGAGTGAGTTTTGAATTCCTGTCTATGTGGGCAATCCTTTGATCTGTATGTTGAGAGTAGTCAAATCGGCAACTCAATAAGCCTACCATTTAAAAAAAAAAATTCTAATTAGGGAGCTGGAAACATATATTCATAAGATGAGAATTCACTCCTTCCCGTGTTTAGAGTAAGTAGATAAATTACTCCCTTAAAGGCTAACTCCGGGTCTTGAACAATCAGGTCTCACCCTCTCACGGGCCTGGGAGGGGTTAGTTTATAGTTGGACTATAAACAGTTTGTTCGTTAGAGGGATCAGTGGTACTTAAGAAGTTAGATATAACTACAGGGATAAAACGGTAATTTGACCCAGCTGTAGTTATGAGTAATTTTTGAAGGGTCAACTTACTGTTAATTAATAAATTCCATGGACACAGAAATATATCTATAGTGAGAAGAGTGCAACTGTAAATCTTCAATGGAGTGACCTAAGTGTTAATGAATATTGATTAATCTAATTAAAGAGTTTAATTGATTGATCTCATATCATTGGACCTTCTAACTATAGGTCCATAAGATCCCCTTGCTAGTTCATAAAGGATTTGTATAAGAATCAAACATTTTGGTTTAATTTGAAATGTTCAAATTAATAAGGGAATTTATTGTACATGATACAATTAGCATAATGTATATAGATACATTAGAACATAAAGTTTATTTTAAATGAGATTCAAAATTTATACTTTATGTTTGGAAGAACCTTTGGAGATTGGCAATTCCGAGGAAGATTAAGTTCTTTATATGGAGGGCTCTACTCAATATAATTCCTACTAATCTCAATCTGCTTCAAAGAGGAGTGAGTATTTCTCCTATTTGCCCTGTCTGCAACAATAAGATTGAATCAACAGATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGGTCTGATTGGAATGCTTCTCTAAATTTTGAGAATTTAAATCTAGCGGCTATTACCTAGTGGGCCATTTGGAATGACAGGAATAATGTTCGAGTAGGCAAACCTATAGCTGACACTATGATCAAAAGAGGATGAGGTTTTAAATACCTTGAAGAATTTTAGAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGGTAAATTAGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT ATGTATCAAATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT ATGTATCAAATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT MYQIMPLSPVREPVFFERVFLPICFQGRIKAERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNCP Homology
BLAST of CaUC01G009070 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida]) HSP 1 Score: 103.6 bits (257), Expect = 2.1e-18 Identity = 64/175 (36.57%), Postives = 89/175 (50.86%), Query Frame = 0
BLAST of CaUC01G009070 vs. NCBI nr
Match: CAA7041153.1 (unnamed protein product [Microthlaspi erraticum]) HSP 1 Score: 95.9 bits (237), Expect = 4.5e-16 Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 0
BLAST of CaUC01G009070 vs. NCBI nr
Match: KAG2635063.1 (hypothetical protein PVAP13_2NG311303 [Panicum virgatum]) HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14 Identity = 57/185 (30.81%), Postives = 98/185 (52.97%), Query Frame = 0
BLAST of CaUC01G009070 vs. NCBI nr
Match: XP_042959454.1 (uncharacterized protein LOC122294624 [Carya illinoinensis]) HSP 1 Score: 90.1 bits (222), Expect = 2.5e-14 Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 0
BLAST of CaUC01G009070 vs. NCBI nr
Match: XP_042972859.1 (uncharacterized protein LOC122304666 [Carya illinoinensis]) HSP 1 Score: 89.7 bits (221), Expect = 3.2e-14 Identity = 53/166 (31.93%), Postives = 83/166 (50.00%), Query Frame = 0
BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A6D2JVB2 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16 Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 0
BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A5J9U9H2 (RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36016 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 0
BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: B8AI82 (RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05906 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14 Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 0
BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A1R3G9C4 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27657 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 5.9e-14 Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = 0
BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A446NU09 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G213860 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13 Identity = 47/160 (29.38%), Postives = 87/160 (54.37%), Query Frame = 0
BLAST of CaUC01G009070 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07 Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 0
BLAST of CaUC01G009070 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07 Identity = 43/159 (27.04%), Postives = 70/159 (44.03%), Query Frame = 0
BLAST of CaUC01G009070 vs. TAIR 10
Match: AT5G38920.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 43.5 bits (101), Expect = 2.5e-04 Identity = 32/116 (27.59%), Postives = 54/116 (46.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|