CaUC01G009070 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G009070
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRNase H domain-containing protein
LocationCiama_Chr01: 10738121 .. 10740534 (-)
RNA-Seq ExpressionCaUC01G009070
SyntenyCaUC01G009070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCAAGTTACACAATCTTTTACATTCTATTTGAAAAAACGTCGTGTAAGATTTATAATTGTATCAATTAAACCCTTAAACTTGGAATCAATTTAAACACTTAGAATTTTCATTGAGAATCATCAATGCATTAATTCTAATTGTCTATTTTGTAAAACCGACAATTAAAGAAGCTTGCCCACAATTGAGAATTAAGGCATGAATGCTTTTTTAAGGTAAACGTAATGAAGAGTCTAAATATTGGGACTGATATGTCCTAAATCTCTTGGATCTTGTAGTTTTGTAAATTGTAAATACATTTTATTTATTGAACAAAATAAGAAGTTATTTTATCTGTCTTATGCATTAAACTCAATCTAATAAACTAAGATTCCATGGTTATTTTATGTAAACTTAAACATGTATGTGGTTGACATACAAGGTTGGATCATGTTGAAGTAATAACCAAAAGGTCTGTAGTATAGGAATAAGGTTGGGTGTCTTATTCTGGTAACACTACAAATATGACCCACTTTGTAATTGTTATAAGAAGTTGTAAAGTGTTACAAACGATTTGATCCTAATTGTTCATGTGGTAACATGTGAGTGGATATCATATGCAAAGAGTTTGTATAAGAGAACAAACTGCAAAATGTTTAATTTCTCTTTGTAACGCCATTAATTGTAGAAATTAACAGTTATAGGATAACTATAGGTAACTCGACTTGAATCCTGAGTGAGTTTTGAATTCCTGTCTATGTGGGCAATCCTTTGATCTGTATGTTGAGAGTAGTCAAATCGGCAACTCAATAAGCCTACCATTTAAAAAAAAAAATTCTAATTAGGGAGCTGGAAACATATATTCATAAGATGAGAATTCACTCCTTCCCGTGTTTAGAGTAAGTAGATAAATTACTCCCTTAAAGGCTAACTCCGGGTCTTGAACAATCAGGTCTCACCCTCTCACGGGCCTGGGAGGGGTTAGTTTATAGTTGGACTATAAACAGTTTGTTCGTTAGAGGGATCAGTGGTACTTAAGAAGTTAGATATAACTACAGGGATAAAACGGTAATTTGACCCAGCTGTAGTTATGAGTAATTTTTGAAGGGTCAACTTACTGTTAATTAATAAATTCCATGGACACAGAAATATATCTATAGTGAGAAGAGTGCAACTGTAAATCTTCAATGGAGTGACCTAAGTGTTAATGAATATTGATTAATCTAATTAAAGAGTTTAATTGATTGATCTCATATCATTGGACCTTCTAACTATAGGTCCATAAGATCCCCTTGCTAGTTCATAAAGGATTTGTATAAGAATCAAACATTTTGGTTTAATTTGAAATGTTCAAATTAATAAGGGAATTTATTGTACATGATACAATTAGCATAATGTATATAGATACATTAGAACATAAAGTTTATTTTAAATGAGATTCAAAATTTATACTTTATGTTTGGAAGAACCTTTGGAGATTGGCAATTCCGAGGAAGATTAAGTTCTTTATATGGAGGGCTCTACTCAATATAATTCCTACTAATCTCAATCTGCTTCAAAGAGGAGTGAGTATTTCTCCTATTTGCCCTGTCTGCAACAATAAGATTGAATCAACAGATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGGTCTGATTGGAATGCTTCTCTAAATTTTGAGAATTTAAATCTAGCGGCTATTACCTAGTGGGCCATTTGGAATGACAGGAATAATGTTCGAGTAGGCAAACCTATAGCTGACACTATGATCAAAAGAGGATGAGGTTTTAAATACCTTGAAGAATTTTAGAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGGTAAATTAGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT

mRNA sequence

ATGTATCAAATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT

Coding sequence (CDS)

ATGTATCAAATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT

Protein sequence

MYQIMPLSPVREPVFFERVFLPICFQGRIKAERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNCP
Homology
BLAST of CaUC01G009070 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-18
Identity = 64/175 (36.57%), Postives = 89/175 (50.86%), Query Frame = 0

Query: 29  IKAERAQSRRVSNSQAKEAKKLEIT-KLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRD 88
           ++ +RA   R S  +    KK   + + W  P    +KLNVDAAW F P S+G  AI+RD
Sbjct: 28  LRFDRASHFRTSTCKDSSNKKSGTSDRTWSTPPTSFIKLNVDAAWKFSPYSSGFSAIIRD 87

Query: 89  HQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVIN---NLSE 148
           +Q  +  +   S+++    PLAE   V +GLRL      KK+IV+SDC   I+    +  
Sbjct: 88  NQGSLKVVQISSIDAVYPPPLAEAFVVLQGLRLTSKMNFKKIIVKSDCSGAIDLFLKILI 147

Query: 149 RDFSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSY 200
            D S   W  EI ++S  F  ++F Y  R  N  AD +AK  R   IN  W  SY
Sbjct: 148 SDSSVRVWLEEIWEISIVFYPINFAYIPRNINKLADIVAKRTRILGINDVWMDSY 202

BLAST of CaUC01G009070 vs. NCBI nr
Match: CAA7041153.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-16
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 0

Query: 32  ERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQRE 91
           E A+SR   N   ++ +       W+RP  G +K N D AW  +    GLG ++R+ + +
Sbjct: 587 EWARSREEENKGQQQPRTSTPRDKWKRPKEGWIKCNSDGAWPKEGAKCGLGWVMRNQEGK 646

Query: 92  VLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADC 151
           V+ I A+++        AE  A++  +R    F  +K++ ESD + +IN ++E    A+ 
Sbjct: 647 VMWIGAKAIPKTRTVIEAELEALRWAMRFLRRFNYRKIVFESDSKELINMINE----AEE 706

Query: 152 W------FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPTWIV 211
           W       NEIR L   F  V+F + +R  NG ADR+AK A S  I+A   +S  P W+ 
Sbjct: 707 WPMLQPGLNEIRHLVTHFDEVAFAFQSREGNGVADRVAKEALSFMIDAPKIYSIVPDWVK 766

BLAST of CaUC01G009070 vs. NCBI nr
Match: KAG2635063.1 (hypothetical protein PVAP13_2NG311303 [Panicum virgatum])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 57/185 (30.81%), Postives = 98/185 (52.97%), Query Frame = 0

Query: 31  AERAQSRRVSNSQAKEA--KKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDH 90
           A  A S  V     K A  K++++ + W++P+   +KLNVDA++     +   GAI+RDH
Sbjct: 287 ARSAMSIMVLTLNYKNATKKEVQVKEGWKKPAENYVKLNVDASFSEATGTGATGAIIRDH 346

Query: 91  QREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFS 150
             + +A++ R L    +AP+AE  A+ +GLRLA      ++IV +DC  V++ + +  FS
Sbjct: 347 TGQAIALAQRFLQHVGDAPMAEAFALLDGLRLAEQVGCNRIIVNTDCMQVVSTMRDDGFS 406

Query: 151 AD---CWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVN 210
           A      +++   L   F+ +S  +CNR +N  A  +A+N+   + +  W    P +I  
Sbjct: 407 ATTAAAVYDDCFKLWQEFSLISIEHCNRDANQVAHELARNSFLNRSSCIWADEPPNFIFA 466

BLAST of CaUC01G009070 vs. NCBI nr
Match: XP_042959454.1 (uncharacterized protein LOC122294624 [Carya illinoinensis])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-14
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 0

Query: 56  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVK 115
           W+ P +G LKLN D A   D    G+GAIL D    VL   ++   + ++    E LAV 
Sbjct: 178 WKAPPVGVLKLNTDGAIFSDAHKAGIGAILCDSSGHVLMAVSKIELALEDPKTVELLAVF 237

Query: 116 EGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADC---WFNEIRDLSDGFASVSFTYCN 175
            G++L I+     L VESDC L++  L + D S       F+E++ L + F+SVSF +  
Sbjct: 238 RGMQLCISMGISALEVESDCLLLVQALQQEDMSNSLLGNLFSEVKRLCNYFSSVSFVHVY 297

Query: 176 RGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNC 213
           R  N  A  +A+NA   +    W+ S P ++   L  D C
Sbjct: 298 REGNRAAHLLARNAWRVEDIDMWWDSIPDFLSQALWFDKC 337

BLAST of CaUC01G009070 vs. NCBI nr
Match: XP_042972859.1 (uncharacterized protein LOC122304666 [Carya illinoinensis])

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-14
Identity = 53/166 (31.93%), Postives = 83/166 (50.00%), Query Frame = 0

Query: 48  KKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAP 107
           K++     W  P IG LKLNVD A   D  S G+G ILRDH  +V+  ++        A 
Sbjct: 83  KRINYVVYWHLPPIGCLKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASNVEREVSSAV 142

Query: 108 LAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERD---FSADCWFNEIRDLSDGFA 167
             E +A+  GL+L + +   K+I+ESD  +++N L+E        D    +IR L  GF 
Sbjct: 143 FIEAIALLRGLQLCVQWGVPKIILESDSLILVNCLNENSECLTEFDFILQDIRRLMHGFE 202

Query: 168 SVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLD 211
                + +R  NG A ++A+ A+       W+ S P+++   + LD
Sbjct: 203 ETRLEHVHRLGNGAAHQLARYAKEVDDIVMWWDSCPSFVSQAIWLD 248

BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A6D2JVB2 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 0

Query: 32  ERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQRE 91
           E A+SR   N   ++ +       W+RP  G +K N D AW  +    GLG ++R+ + +
Sbjct: 587 EWARSREEENKGQQQPRTSTPRDKWKRPKEGWIKCNSDGAWPKEGAKCGLGWVMRNQEGK 646

Query: 92  VLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADC 151
           V+ I A+++        AE  A++  +R    F  +K++ ESD + +IN ++E    A+ 
Sbjct: 647 VMWIGAKAIPKTRTVIEAELEALRWAMRFLRRFNYRKIVFESDSKELINMINE----AEE 706

Query: 152 W------FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPTWIV 211
           W       NEIR L   F  V+F + +R  NG ADR+AK A S  I+A   +S  P W+ 
Sbjct: 707 WPMLQPGLNEIRHLVTHFDEVAFAFQSREGNGVADRVAKEALSFMIDAPKIYSIVPDWVK 766

BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A5J9U9H2 (RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36016 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 0

Query: 35  QSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLA 94
           Q +  S+ + KE   +   K W +P  G  K+NVDAA+  D    G+G I+R+   E++ 
Sbjct: 79  QDQIPSDVKRKEPGNVRTIKKWVKPPCGRAKINVDAAFSVDSGRAGVGVIIRNDHGEIVL 138

Query: 95  ISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADCW-- 154
            S R + +   A  AE LA KEGL L + +      +ESDC +V N L   + +   +  
Sbjct: 139 CSGRVVFNCASAEEAELLACKEGLNLGLKWVAMPCELESDCLVVCNALKSNEENGSHYAL 198

Query: 155 -FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDN 214
              E+++L      V  T+CNR  N  +  +A  A     +  W  S+P ++ + ++ D 
Sbjct: 199 LLREVKELIAELREVRITHCNRTQNRVSHILAGRASREMFSKVWLHSFPDFVASSVATDC 258

BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: B8AI82 (RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05906 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-14
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 0

Query: 49  KLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAP- 108
           K +I   W++P  G L +NVDAA+  D  S G G +LRDH    +  S   L    +AP 
Sbjct: 18  KTKIQNGWKKPPEGMLMINVDAAFDIDSGSGGTGVVLRDHLGACVTASQAFLPYVLDAPT 77

Query: 109 LAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADC---WFNEIRDLSDGFA 168
           +AE  A+++GL LA     K +IV++DC  V++ + +  FSA      F++ + + DGF 
Sbjct: 78  MAEAFALRDGLALAQHIGAKNVIVQTDCMQVVSTMMDGGFSATAAMSVFDDCKLMWDGFG 137

Query: 169 SVSFTYCNRGSNGTADRIAK 185
           ++S  +CNR SN  A  +A+
Sbjct: 138 TISIEHCNRNSNQVAHELAR 157

BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A1R3G9C4 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27657 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.9e-14
Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = 0

Query: 56   WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVK 115
            W  P++G+ KLNVDAA+  +    GLGA++RDH  +V + + + L+   +   AE  A+K
Sbjct: 879  WMPPTVGSFKLNVDAAFDKNRGVAGLGAVIRDHNGDVRSYATKQLSFVSDLFYAEIYAIK 938

Query: 116  EGLRLAIAFRQKKLIVESDCQL---VINNLSERDFSADCWFNEIRDLSDGFASVSFTYCN 175
             GL+LA     ++ +VESDC +    IN+ S   +   C  +EIR+L+  F S+ F + N
Sbjct: 939  MGLQLAKEEGLQRYLVESDCLVGISAINSSSTLFWEGACLIDEIRNLATSFESIRFRHLN 998

Query: 176  RGSNGTADRIAKNA 187
            R +N  A  +AK A
Sbjct: 999  RKANYCAHGLAKFA 1012

BLAST of CaUC01G009070 vs. ExPASy TrEMBL
Match: A0A446NU09 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G213860 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 47/160 (29.38%), Postives = 87/160 (54.37%), Query Frame = 0

Query: 55  LWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAV 114
           +W++P  G  K+NVDA++ ++  S   GA+ RD++ + +A ++  + +      AE  A+
Sbjct: 73  MWRKPGYGIAKINVDASFQYETLSGACGAVARDYRGDFIAAASWFVPNISGVDSAELTAI 132

Query: 115 KEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSAD---CWFNEIRDLSDGFASVSFTYC 174
           + G+ LA       + +ESDC   +N+L++ D           E + L   FAS+SF +C
Sbjct: 133 RNGIYLATHIGCNNIEIESDCSFAVNSLNQVDDYLGPEVAIITEYKQLMMDFASISFRHC 192

Query: 175 NRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDN 212
            R +N  AD +AKN  + + ++ W    P +I +HL +++
Sbjct: 193 YREANQVADELAKNTFTTRSSSSWDDEIPDFI-SHLLVND 231

BLAST of CaUC01G009070 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 0

Query: 58  RPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPL-AEFLAVKE 117
           RP +  + +  DAAW  +    G G ++R+   E+ A+  +S       PL AE +A+  
Sbjct: 25  RPDLDRVTIFTDAAWKHETKDVGFGWVIRNCP-ELTALHYQSAARNVRLPLMAEAIALFL 84

Query: 118 GLRLAIAFRQKKLIVESDCQLVINNLSERDFSADCW--FNEIRDLSDGFASVSFTYCNRG 177
            L+ A +    KL + SD Q +I  ++    S + +    +I +LS GFA VSF++  R 
Sbjct: 85  ALQYAQSIGITKLSMASDSQQLITAITSESPSTEFYGIIFDILNLSLGFADVSFSFVPRS 144

Query: 178 SNGTADRIAKNA 187
            N  AD +AK++
Sbjct: 145 ENRVADELAKSS 155

BLAST of CaUC01G009070 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 43/159 (27.04%), Postives = 70/159 (44.03%), Query Frame = 0

Query: 56  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVK 115
           W  P    LK N DA+       +GLG ILR+ Q  V+               AE   + 
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164

Query: 116 EGLRLAIAFRQKKLIVESDCQLVINNLSERDFS--ADCWFNEIRDLSDGFASVSFTYCNR 175
             ++ +  F  KK+I E D Q +   ++ +  +     + + I+     F S+ F++ +R
Sbjct: 165 WAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDTIQSWIPSFESIEFSFKHR 224

Query: 176 GSNGTADRIAKNARSCKINADW--FFSYPTWIVNHLSLD 211
             NG AD +AK A   K N  W  F S P ++  +++ D
Sbjct: 225 EQNGCADFLAKQA--IKENTQWSLFHSCPYFLSPYVNND 261

BLAST of CaUC01G009070 vs. TAIR 10
Match: AT5G38920.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.5e-04
Identity = 32/116 (27.59%), Postives = 54/116 (46.55%), Query Frame = 0

Query: 98  RSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFS--ADCWFNE 157
           + L+    A + E  A++  +        +K+I ESD Q +++ L +       D    +
Sbjct: 75  QGLSMTQSALVTEAEAMRWAVLSLSRLNYRKVIFESDSQQLVSILVDNGDMPILDPILQD 134

Query: 158 IRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPTWIVNHLSLD 211
           I+ L   F    F + +RG NG ADRIAK + S +      +S  P W+ + + LD
Sbjct: 135 IKLLLQHFEETKFVFMHRGGNGVADRIAKESLSLENYDPKLYSIVPYWVKSFVELD 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902513.12.1e-1836.57uncharacterized protein LOC120089172 [Benincasa hispida][more]
CAA7041153.14.5e-1632.09unnamed protein product [Microthlaspi erraticum][more]
KAG2635063.11.4e-1430.81hypothetical protein PVAP13_2NG311303 [Panicum virgatum][more]
XP_042959454.12.5e-1434.38uncharacterized protein LOC122294624 [Carya illinoinensis][more]
XP_042972859.13.2e-1431.93uncharacterized protein LOC122304666 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6D2JVB22.2e-1632.09Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 ... [more]
A0A5J9U9H22.0e-1429.67RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=E... [more]
B8AI823.5e-1436.43RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_... [more]
A0A1R3G9C45.9e-1437.31Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27657 PE=4 SV... [more]
A0A446NU091.0e-1329.38RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=T... [more]
Match NameE-valueIdentityDescription
AT4G09490.11.4e-0731.06Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT5G65005.11.4e-0727.04Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT5G38920.12.5e-0427.59Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 67..186
e-value: 5.8E-21
score: 74.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 63..192
e-value: 7.9E-16
score: 60.2
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 34..210
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 66..184
e-value: 4.40335E-27
score: 98.1552
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 63..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G009070.1CaUC01G009070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity