CaUC01G009010 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G009010
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRNase H domain-containing protein
LocationCiama_Chr01: 10651167 .. 10651523 (-)
RNA-Seq ExpressionCaUC01G009010
SyntenyCaUC01G009010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGCAGCTTGGAAGGAAGACCCACCTTCAACAGGTTGGAGTTCTATTGTACGAGATTGGAATGGAAATTTGTGTGGGGGTTTCAGCGAGTTCCTTGAATCTGGTTTTTGATCCCCCATTGGCAGAAATTCTAGCCATTCGGGATGGACTTCGTTTTGCTTTATCCTGTGCTTACCAAAAGATTCAGGTGGAATCAGATTGTGCACAAGCCATGAATGCAATCACAAGTGAAGATCCCCAACTGAGTTGTGCTGATTGTTGGCTGGAAGAAATTAGGGATTTATCTTGTAATTTCACTTCAGTCCAGTTTTTGTACGTAATCGAGAATGTAATGGGGTGGCTGATAGTGTAG

mRNA sequence

ATGTTGATGCAGCTTGGAAGGAAGACCCACCTTCAACAGGTTGGAGTTCTATTGTACGAGATTGGAATGGAAATTTGTGTGGGGGTTTCAGCGAGTTCCTTGAATCTGGTTTTTGATCCCCCATTGGCAGAAATTCTAGCCATTCGGGATGGACTTCGTTTTGCTTTATCCTGTGCTTACCAAAAGATTCAGGTGGAATCAGATTGTGCACAAGCCATGAATGCAATCACAAGTGAAGATCCCCAACTGAGTTGTGCTGATTGTTGGCTGGAAGAAATTAGGGATTTATCTTGTAATTTCACTTCAGTCCAGTTTTTGTACGTAATCGAGAATGTAATGGGGTGGCTGATAGTGTAG

Coding sequence (CDS)

ATGTTGATGCAGCTTGGAAGGAAGACCCACCTTCAACAGGTTGGAGTTCTATTGTACGAGATTGGAATGGAAATTTGTGTGGGGGTTTCAGCGAGTTCCTTGAATCTGGTTTTTGATCCCCCATTGGCAGAAATTCTAGCCATTCGGGATGGACTTCGTTTTGCTTTATCCTGTGCTTACCAAAAGATTCAGGTGGAATCAGATTGTGCACAAGCCATGAATGCAATCACAAGTGAAGATCCCCAACTGAGTTGTGCTGATTGTTGGCTGGAAGAAATTAGGGATTTATCTTGTAATTTCACTTCAGTCCAGTTTTTGTACGTAATCGAGAATGTAATGGGGTGGCTGATAGTGTAG

Protein sequence

MLMQLGRKTHLQQVGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIENVMGWLIV
Homology
BLAST of CaUC01G009010 vs. NCBI nr
Match: XP_031103207.1 (uncharacterized protein LOC116006850 [Ipomoea triloba])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 30/95 (31.58%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 14  VGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAM 73
           V  ++Y+ G  + +   +SS+  + DP LAE +AI++ L +A+ C ++K+ V SDC    
Sbjct: 94  VAAVVYD-GSGVFLAARSSSVRCLHDPHLAEAMAIKEALSWAMECGWRKVMVYSDCQLVC 153

Query: 74  NAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV 109
           + + S    LS A C L++  +L  +F +V F+++
Sbjct: 154 SLLKSRSLNLSYAGCVLKDCHNLKRHFDTVSFVFI 187

BLAST of CaUC01G009010 vs. NCBI nr
Match: XP_031095241.1 (uncharacterized protein LOC115999536 [Ipomoea triloba])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 31  ASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWL 90
           +S +  + DP LAE +AI++ L +A  C ++KI + SDC    + + S  P LS A C L
Sbjct: 110 SSKVRCLHDPHLAEAIAIKEALSWAKDCDWRKIIIFSDCQVVCSLLKSGSPNLSYAGCVL 169

Query: 91  EEIRDLSCNFTSVQFLYV 109
           +E  +L  +F SV F ++
Sbjct: 170 QECLNLKRHFDSVSFSFI 187

BLAST of CaUC01G009010 vs. NCBI nr
Match: KAF4366503.1 (hypothetical protein F8388_003741 [Cannabis sativa])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 22  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDP 81
           G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +   
Sbjct: 600 GQVLCSSSGFSSRPLSALP--AESVAVISGLKLALAAGVKKNQVASDCLNAINLINNPSR 659

Query: 82  QLSCADCWLEEIRDLSCNFTSVQFLYVIEN 112
            +S  D  LEEI  LSCNF  V+F + + +
Sbjct: 660 SISDVDNLLEEITGLSCNFDLVEFRFELRD 687

BLAST of CaUC01G009010 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 0

Query: 29  VSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADC 88
           V  SS++ V+ PPLAE   +  GLR      ++KI V+SDC+ A++         S    
Sbjct: 95  VQISSIDAVYPPPLAEAFVVLQGLRLTSKMNFKKIIVKSDCSGAIDLFLKILISDSSVRV 154

Query: 89  WLEEIRDLSCNFTSVQFLYVIENV 113
           WLEEI ++S  F  + F Y+  N+
Sbjct: 155 WLEEIWEISIVFYPINFAYIPRNI 178

BLAST of CaUC01G009010 vs. NCBI nr
Match: KAF4400944.1 (hypothetical protein G4B88_013785 [Cannabis sativa])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 22  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDP 81
           G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +   
Sbjct: 240 GQVLCSSSGFSSRPLSALP--AESVAVISGLKLALAAGVKKNQVASDCLNAINLINNPSR 299

Query: 82  QLSCADCWLEEIRDLSCNFTSVQFLYVIEN 112
            +S  D  LEEI  LSCNF  V+F + + +
Sbjct: 300 SISDVDNLLEEITGLSCNFDLVEFRFELRD 327

BLAST of CaUC01G009010 vs. ExPASy TrEMBL
Match: A0A7J6F713 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003741 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 22  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDP 81
           G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +   
Sbjct: 600 GQVLCSSSGFSSRPLSALP--AESVAVISGLKLALAAGVKKNQVASDCLNAINLINNPSR 659

Query: 82  QLSCADCWLEEIRDLSCNFTSVQFLYVIEN 112
            +S  D  LEEI  LSCNF  V+F + + +
Sbjct: 660 SISDVDNLLEEITGLSCNFDLVEFRFELRD 687

BLAST of CaUC01G009010 vs. ExPASy TrEMBL
Match: A0A7J6I094 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_013785 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 22  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDP 81
           G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +   
Sbjct: 240 GQVLCSSSGFSSRPLSALP--AESVAVISGLKLALAAGVKKNQVASDCLNAINLINNPSR 299

Query: 82  QLSCADCWLEEIRDLSCNFTSVQFLYVIEN 112
            +S  D  LEEI  LSCNF  V+F + + +
Sbjct: 300 SISDVDNLLEEITGLSCNFDLVEFRFELRD 327

BLAST of CaUC01G009010 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 39  DPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSC-ADCWLEEIRDLS 98
           DP +AE LA+ +GLR A     Q++Q ESD  Q +N +T EDP   C ++ WLE+IR L+
Sbjct: 74  DPLMAESLALLEGLRLADHLNIQQVQFESDSLQLINLLT-EDPISWCGSNVWLEDIRVLA 133

Query: 99  CNFTSVQFLYV 109
            NF    FL+V
Sbjct: 134 RNFIDFNFLHV 143

BLAST of CaUC01G009010 vs. ExPASy TrEMBL
Match: A0A803NTU1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 22   GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDP 81
            G  +C     SS  L   P  AE +AI  GL+ AL+   +K +V SDC  A+N I +   
Sbjct: 919  GQVLCSSSGFSSRPLSALP--AESVAIISGLKLALAAGVKKNRVASDCLNAINLINNPSR 978

Query: 82   QLSCADCWLEEIRDLSCNFTSVQFLYVIEN 112
             +S  D  LEEI  LSCNF  V+F + + +
Sbjct: 979  SISDVDNLLEEITGLSCNFDLVEFCFELRD 1006

BLAST of CaUC01G009010 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.0e-04
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 0

Query: 14  VGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAM 73
           VGVLL E   EI VG      ++V  P LA+ILAIR+GL  A      ++ VE+D  +A+
Sbjct: 90  VGVLLREGNAEI-VGAMV-DFHMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEAL 149

Query: 74  NAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV 109
           N I  + P    A  W+E+IR  + +F  + F +V
Sbjct: 150 NLIGDKSPWKGEAVSWVEDIRAFARDFQEICFQHV 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031103207.11.2e-0531.58uncharacterized protein LOC116006850 [Ipomoea triloba][more]
XP_031095241.11.3e-0437.18uncharacterized protein LOC115999536 [Ipomoea triloba][more]
KAF4366503.12.2e-0438.89hypothetical protein F8388_003741 [Cannabis sativa][more]
XP_038902513.12.2e-0435.71uncharacterized protein LOC120089172 [Benincasa hispida][more]
KAF4400944.12.2e-0438.89hypothetical protein G4B88_013785 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6F7131.1e-0438.89Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003741 PE=4 SV=1[more]
A0A7J6I0941.1e-0438.89RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_013785 PE=... [more]
A0A6J1CNR41.4e-0446.48uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A803NTU11.8e-0438.89Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1DZK34.0e-0438.95uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 25..108
e-value: 2.3E-14
score: 53.2
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 30..108
e-value: 1.29618E-12
score: 57.7092

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G009010.1CaUC01G009010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity