CaUC01G008980 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G008980
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	rRNA-processing protein UTP23 homolog
Location	Ciama_Chr01: 10612972 .. 10622500 (+)
RNA-Seq Expression	CaUC01G008980
Synteny	CaUC01G008980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTGATAGGTTAGCCGACTATAAGGGACCAACAAACCAGAAAGCAGATTTCTTCTTCTCTTCTCAATTTCTCGCCCTCGGCTTCTCCTGCGCTGCTCCAGCGCCAGCAACAGCAACCTCCGGCATCCGAACAAACCAGATCGGCAACGAGGTTTGTAAAAATTTCAAATCTTAAACTTCAGTGTGTGTTTAAATTTTTTGGCTTCCTCTCTCTAACATTTTTTTTCCCTTAAAATTTCAGATTTTCACTTCTTGCTTCTCAAATTTCAAACTTTCAGCGGCCGATTTCGAGGTTTGTAAAAATGTAAATTCATTTGTGGTTGTTTATGATTGATTTGTGTAGGATTTAGATTGTTTATAACTTGTAAAAATGTGGCTGTTCGATTCAAACTGTTTAGGATCTGTGTAACATTTTTTAGCTTGTGAAATTGTGTGTTTTTTATTTTTCAGACTGTTTGTGTTTATGATGGATTTGTGTAGGATTTAGACTGTTTAGGATTTGTGGCTGTCTGATTTGGATGGATTTGTGTAAAAATGTAACTTGTAAAAATGTAAATTCATTTGTAGCTGTTTATGGGCTGTTATAAGTTAAATGGTGGCCTGAATCCACAACATGTAGTGTAGAATCTCACAGCTCTCCGTTGATGCTTTTGTTTTTTTTATTCTCATCTACAAAAATCAACAAATAAAACAAATAACAAGATAAACAAATTTGAGAGAACTTTATGAACAAAAAAAAGAAGCAAGAAATTTGAAATAAGTTCGATTTTAAATCTTGTTTTTAGGAAAAGGAAAAAAAAAACACAAACAAATTAAATCTGATGTATTCTTGTTTAAGTGTTTTATTATTTTGATTTGTTGTAATTTATAGTTACTATTTAGTAACTTTTGGTCTGTTATTCAAACCAACCGCGTGGCTTTGGTTTTTAGTCTTAGATTGTTTTAAGGATTGGCCAACCTCCGGCAACGAGGTTTGTTAAAATTTCAGATCTTGAAACTTCCGTGTGTTCAATGTTTTGGCTTCCTCTCTCTAACATTTTTTTTTCTCTTAAAATTTCAGTTCTTCACTTCTTGCTTCTCAAATTTCGAACTTTCAGCGGCCAATTTCGAGGTTTGTAAAAATGTCAATTCATTTGTGGTTGTTTATGATTGGTTTGTGTAGGATTTAGACTGTTTATAACTTGTAAAAATGTGGCTGTCCGATTCAAATTGTTTAGGATTTGTGTAACATTTTTTGGCTTGTAAAATTGTGTGTTTTTTTTTTTTTATTTTTAAGACTGTTTGTGTTTATGATGGATTTGTGTAGGATTTAGACTGTTTAGGATTTGTGGCTGTCCAATTCAAATGGATTTGGGTGATCAACTAGGAGTGTGCATGGTTCGGTTCGGTCATTTTAGACTAAACTGAACTGGTCGGTGTATTCTAAATAAGAACGACTGAAAACTGGCTAGGCTTGGTTCCAGTTTTTTAACCGAATTGCCCTGATTCAATTCAGGGCCAGTTCGGTTCGATTATTTTTTTTTTAATTTTTTAATTTTTTTAATTTTTTTTGGTATAATGCCTTTTGTCCCTTGTGCTGTTTGCTGTCCCAACTCATTTTTTGAGTGTTGTCTCAAATACAAATCTATACTTGTTTTTTTTTTCAACCAAAATCTATCAAACTTTCAAATTATACTATAATTAACAAAATTCACTAAGCCATCTGTAATACTTATGTCATTTTTTCAAAAATTAAAAATTAAAAATAACCTTGGCGGTGGCGGTGGCTAGGTTCTGGCCAGTGGATTGTGGAGCATCAGAATCTTGGATAGAATAGCCGCCTGAGTTCTTTCTCGATCTAAAGGGTTGCAATAGGGTTTTCTCTTAGGGTGGGCAACTGCACTGGCATAAATCAAATGGCACACTCCAAATAAAAATCAACTTCACAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAACTAAATGCAAATACACTGTAAGTCAAATGGCAACTTTAACTTTAACAAAAACCCGCAAATCAACCCTGATACTCACCTATCCGATTCCTTTGGTGACTACACAACGACAATAACGATGGAGACTCGTAAACAGCGGAGTCGGCGCTACCCTCGGCGATGGCGATAGTCTTGGCATGGATGGCGGCGAGAGGCAGTCGATGGCGTGCAGTAGACTCCAGGAAATTGGAGGTGGAGGCGTGGCTGAATCTTGAAGCTACCGATTGTCTTCACGCTTAGGAGAAAAAAGTGGGAGGCTTTATGCGGTGCTCTAGTAGCTTTAACTAGTGGTGTACCTAGGTTGGGTTGGGGCATTTTTTTGGATCAACCTGAATTTTCAGGTTGGTTGGGTTGGCTACCCAACTACCCGAATAGGGTACCCAACCCAACCCTTAAAATTCAGGTTGGGTTGGGTTGTCGAGTTGTGTGTGTGTTTTTTTTTTCCTTTTCTTTTCTCTCTTTTTTTTTGGTAAAACACATTGCATCCATGAACCACTAATTGACATATCCATTAATCTAAAGATATATGTAGAAAATACATTGATCAAGATAAAGTATAAAATAGTTCTTAAAACACTAATTGGCATATCTATGAATCCATAGTCACAAACATATCCATGAATTAAACTTCTAAAACATAAAGTTTAACATATCCATATCCATGAATCCATAGTTGACAAACAAAATATTACAATGCATAACAACATAGTTCTTAATAGTTAATCCTATAAAATTACAATTACATAAGGCAGTCAACAACTAAACTATGAACCAAACTCTCTAAAACTGCAAGTCCGCAACAATTGGCATCCCGAGCATTAGCTTAGTCCTAAAATTTTAAACATTTCAAGTAAGTAGTTTAAATCAAATAAATCAATAATAAAAAATTGAAAATAAATTAAAACATTCAACTTACCATGAAATGGAAAATTTTTTAGGTTGGAGTGAATGCTGGAGAGGAAAGAAGTCGAGAGGCGGAAGTTGCCATGTCAATTTGGTTTGCCGATCTGGAGCGAATGTTGGAGAGGAATCAAACCTTGTCGATCTGGTTTGTTCGAATGCTGCCGATCTGGTTTGCTGGTGTTGGAGGTTGGAGCATTACAGTGAGAGGGGAGAAACCGAGGGCGAGAAATTGAGAAGAGAAGAAGAAATTTGCCGATCTGGTTTGTTGGTCCCTTATAGTTGGCTAACCTATAACCCTTTACCCTAACTTAAACTTATAATATTAATATATATATTAAAAATTCAGGTTGGGTTAGGTCAACTCGAATTCTTCAAAATTGCAATCCGAGACCCAACCCAACCCAACCCAAAAAATACAACAATTAACCCAACCCAACCCCTATAATTCGAGTTGGGTAGTTTGGGTTATCACGTCATTTGAACACCCCTAGCTACTGGAGCGCTGCATAAAGCCTCCCACTTTATGCTTGAAGACAACTGGTAGCTTCAAGATTCAGCCACGCCTCCACCTCCGATTGCCTGTAGTCTACTGCACACAACCTCCATTGTTATTGCCGTTGTGTAGTCGCCAGAGGAATCGGATAGGTGAGTATCTGGGTTGATTTGCAGGTTTTTGTTAAAGTTAGAGTTTCATGTATATGGGTTGGCTTCAAGTTGTTTGGCGTTTGATTTACAGTGTATTTGCGTTTATTTTTTTTTATTTTTTTTTCATTTTTTTCGGTTTGTGAAGTTGATTTTTATTTGGAGTGTGGCGTTTGATTTACGTCAGTGTAGTTGCCCACCCTAAGATAAAACCCTATTGCAACCCTTTAGATCGAGAAAGAACTCAGGTGGCTAATCTATCTGAGATTCCGAAGCTCCACAATCCACCAGCCATAGCCTAGCCAATGCCACTGCCAAGGTTTCTTTTTTTTTCTTTTTTTTTTTTTTTAATTTTAAATTTTTGAAAAAGTGACATAAGTATTATAGATGGCTTTTTAGATTTCTGTAAAAGATTTTGGGTGAATTTTGTTGATTTTAGTATAATTTGAAAATTTGATAGATTTTGGTTGAAAAAAAAACAAGTATGGATTTGTATTTGAGACGACACTCAAAAAATGAGTTGGGACAGCAAACAGCCGAAGGGACAGAAGGCATTATATAGAAAAAATTGATTATAATTGAACCGAACTGTCAATCAGGGCAGTTTGGTTAACAAACTAGAACCGAGCCTAGCCGGTTTTCAGCCATTCTTATTTAGAATACACCAACCTGTTCGGTTTAGTCTAAAATGATCGAACCAAACGGTTTACACCCCTAGTTGATCACCCAATATTTTCATTAAACCGAGGCCCAACCCAATCCGACAAAAATGGAAAAATTCCACTCAACCCAACTAACCCCTATAGTTTAGGCTGGGTAGTCCGAGTTATTGGTTGTGGGTTATTTGAACACCTCTATTGGTGACTCTGGAACAAATACAAGTAGGGAATAGAAGAAATGAGAGAATAAAGAATGGAATTCAAGGAGAGCAAAGACGTGCAAGAAATTAAGTAAGAGGGTGTGCTCATTCTATAGACAGAAACCAAGATTTGAAAAGAAGTTCTAATGAATAATATCTCAAAATCTGCTTATTAACTAAAGGAAAGACAGTTTATATATTGACCAATCCTTAAAACAATCTAAGACTAAAAACTAAAACCACGCGGTTGGTTTGAATAGCAGACCAAAAGTTATAGTAACTGTAAATTACAACAAAGCAAAATAACAAAACACTTAAACAAGAATATATCAGATTTAATTTGTTTGTGTTTTGTTTTTCCTTTTCATGAAAACAAGATTTAAAATCAAACTTATTTCAAATTTCTTGCTTCTTTTATTTCTTTTTGTTCGTAAAGTTCTTTCAAATTTGCTTATCTTGTTATTTGTTTTATTTGTTGATTTTTGTAGATGAGAATAAAAAAACAAAAGCGTCAACGGAGAGCTGTGAGATTCTACACTACATGTTGTGGATTCAGGCCACCATTTAAAATCTTTTGCGATGGAACTTTTGTGCACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGATGCTGTTGCTAAAGCTGTTGGTGACAGAGTAAAGCTTTTCACCACCAGGTTTGTTCTTTCTATTGAGTCAATCATAGAGTGGTTCCCGTTTGACTTGTTATTTTCATTATCTCATAGTTTTGGTTTGCAGATGTGTACTCTTAGAGTTGAGGGCTCTTGGCCAATCCTACTCTGGAGCTTTTGAGGCAGCTAGTCAGCTGTTCACTGCGAGGTCAGCTACAGGCTTTTTTCCATCCTTGAACTTGAATAGTTTCTCTTCATGACGACTGGTATCTTAAGTTTTCCATGTTTTTGTGGTATTATCAATTATTGATATGGGGAAGTGTAATTATTTGCTTATTCAATTCTGTCTTTTCTGAGTTGAAATTACACTGTGGTTTTAGATGCAACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATCATTGATGTGATTGGTGAATCAAATCCTGAGCATTTCTTTGTTGCCACTCAAGATACTAATCTTAGGAAGCAGCTTCAACAGGTTAGTGTATTTCATGAACTGACACACAAATATTAGTTTTCCATTAGGCCTAATACTCTTTTCGTTTGCTTCAAATTTGGTTATTTCACAATTGCAACTTATGGTCATTTCTGAGCTAGTTTATGAAATGTTTCTAATTTTTTCTTTCTTATTATATGCAACCTTACTGTTTATAAACAGTTCATAAAATAAAACGGAGAAGTCTTGTGGCATGCCTTTTTTTTGGCTATTTTGTGGGGTGTTTGGCTCAAGAGAAACAATAGAATCTTTAGAGCGGTGGAGATGCCTTGTGATGAATGAGGTTTGGGAGGTGGTGAAATTAAATGTCTCCTTGTGGGCATCGGTCACTAGGCCTTTTTGTAAATGTGATATTGGTTTGATTTTGTTTGTTTGGAGTTCCTTCTTGTAGTTTGTGTTTTGGGATGTTTTTATTCAATGAATGCTCGGTTTTCTAACCTAAAAAAATACGTTTTCTTATCATATGCATGCAAGGTTAGTTTTGCTTTTCTAAAATATGCAGTTAATTTGAAGTTCTCGAGGTTCAATTATGTAATTATTTATCTATATGTTTATATGTTAGCAGATACCTGGGGTCCCACTCATATTTGGTCTGAGAAATGCACTTTTCATGGAGCAACCATCTGATGCACAACGACAGTTTGTTAAGTCTTTAGAAGAAAAAAGGATGCACATTTCTGAGATGGAACGTAATTTATTGAAGAAAAAAATAAAGTATGAAGTGGAAGCTGAGAAAACTAATGGAGATGAAGATTCGGGAGATCAAAATTTAGACACACAAGTTGTGAAAAAGAAAAAGAAAAGCATTCCAAATAATTTGAAAGACAGAGCTCAATTTAAGAGAAACAAAGCAAAGGTATTTTTCCACGATGACATCTTCTCTCTTTATTATAGACAGACTTGATTTTTTATTTTTATTTTGCATTATTGATTGACTAACTTCTGTACTAACTTTGATTTTTATAATTTGGGCATACTTTCTTGTTTTCTATATTAAAAACCATGGAAAAAATTATAACAATAAAAATAAATTGTTTGTGATTTTGATACTGATTTTTTTAGGTGAGTGCTTAGGACTCTAGTTTGTTAACTAAAGGCTTTGCACCCAACGAAAGCTTTTCTTTGTTGGTTTGGTGTCCTTTTTTGTTGTTAGCTCTTGGACTCCCTTTTAATCGAGATTGTTTCTTAGTTTGTCCTTGCTTTTCGTTCATTTTAATCAATGAAAGCTCGGTTGCTCATCAAAAACTAAAGGATTTGCATGAAAAAATTGAATGCGTATGTATAATATTGCAGCTTTTAACTAGATCCATCATCCTTGTGTTAGTATAATATAGTAGTATTTGACTGATCAAAGAACATACAACTGTAATGTAGAAACATGAACAAATGAGTAATAAAACTTCCAACACTTTCAAATGATGAGTAAGAATTTTAATCATAGAAAACTAAGTGTTTTTTCATTACATTAATGGAAAATTATGTTTTTCTTGACATGTACATTTTTGTTCACTCTTTCCTGTTCGCGATTGCATGCATGGTCTTTGATTTTATATAGTGTCTATATGAAATTGGACTGGGTTTGATGTGAAATTTCTATTAGTTTTGATTGCAATGTTCAATGTTGAGGCATTTAAACAATGGAGTTACTTTAACCGGACATGTTCAGGATTGGTTTTTAAATTGTTAAAATCACTTTTTCTCTGTTCAAATTACTTCAAAACATTTGAAAATTACATTTAAAAGTGTAAAATCAAATATTGAATGATTATAGGTATGGTCATACAAAAGTAATTTTAACAATTTCAAAAACTTACTCTCGCATGCTCTAATAAATGTACAATGAGGTAATACTATTTTGTTTATGGTGCTAGTCTGTTCATAGGTTTGAGAAAATTAGAATATCTTATTCTATACACTAAAGAGATATACATATACAAGAGTACAAGAGCGACTTCATTAAGAGAATGTAAAATGACAATAAAGGACACTAAACCAAAGGTGTTTCGTTTACAATAATACTCATTATATAAATTACATCACTCAAACCAATTTTCTTGGTTTGTGCATGTACTTTCATTTTCTAATCTCTCCACGAAACTCTGCAGGGTCCAAACCCTCTTTCATGTTTGAAGAAAAAGGTCAAACCAAGCTCACATCCAGTTTCAGAGAAGGTAGTTTTCCATCTTCAGTCATTTTCATTTTCAGTGCTTCTGAATGCCTAGTAGTCTATTCTAGAATAAGCTGATCATAATGAGATTTTAGTCTAAAATGTTCTTGGAAATTCATGTCCTAATCTAAGGAAATCTTAATATAGTCATTACTCATTGTCATTGAGTTCAATAGCTGATTTTTTTTTCTTCTTCATAATCAATTCTGTATAAATGTAAGCATAGGTAAGGGGGAGACTAGGGCTTCAACTTTTTGTTACTCTCCATGGTTCATTAGAAATTCATGTATACCTATTTTTAAAGTTAGACCTTGTTTTATAACCATTTCGTTTTAAAAATTTTTGTTTTTTTTTTTTCTCCCAAACTGTTGTTGGCAAGCTTTTCATTTTCCATCAAGATATAGTCATGAGAATGCAACTTTTGTTATTTTTTCTTTAATACTTGCATCTTGCTGCTACTCTAAACACACTAAAATAATTATCATCTTATACTTCTATGCATTCTATTTCAATGTGTGTATATGGTCTTGTGGTTGTGATTAAATTGTTCTTTCTCTTATGCACTAAAAGAAGAAAGATGATGCTGCATCAAAGCGGACTCGAAAACGAAAGCGGTCGCGGAAGGCCAAAACGCCAACAAAGACAACCGTGCAATAGTTGGGTCCATATTTGTTGTGCCTTAGGAAATTTTGTTGCTTTGAGGTAAATGGTAGGATTATTTGGTTTTAACTTGAAGCATCCCTAGCTTGAGAATTAGAAAGTTGCAAGAAGTTAATGCTTACATAGATTTACCTGAGTTAAGATTTGAAAATCTATTATACTAAAAAAAATACTTGTCAATATTCTTTTGATTTCTTGATCATTATATAATAGAAGGAAATAGATCATTTCACCATTTAGGC

mRNA sequence

AGGGTGATAGGTTAGCCGACTATAAGGGACCAACAAACCAGAAAGCAGATTTCTTCTTCTCTTCTCAATTTCTCGCCCTCGGCTTCTCCTGCGCTGCTCCAGCGCCAGCAACAGCAACCTCCGGCATCCGAACAAACCAGATCGGCAACGAGATTTTCACTTCTTGCTTCTCAAATTTCAAACTTTCAGCGGCCGATTTCGAGATGAGAATAAAAAAACAAAAGCGTCAACGGAGAGCTGTGAGATTCTACACTACATGTTGTGGATTCAGGCCACCATTTAAAATCTTTTGCGATGGAACTTTTGTGCACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGATGCTGTTGCTAAAGCTGTTGGTGACAGAGTAAAGCTTTTCACCACCAGATGTGTACTCTTAGAGTTGAGGGCTCTTGGCCAATCCTACTCTGGAGCTTTTGAGGCAGCTAGTCAGCTGTTCACTGCGAGATGCAACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATCATTGATGTGATTGGTGAATCAAATCCTGAGCATTTCTTTGTTGCCACTCAAGATACTAATCTTAGGAAGCAGCTTCAACAGATACCTGGGGTCCCACTCATATTTGGTCTGAGAAATGCACTTTTCATGGAGCAACCATCTGATGCACAACGACAGTTTGTTAAGTCTTTAGAAGAAAAAAGGATGCACATTTCTGAGATGGAACGTAATTTATTGAAGAAAAAAATAAAGTATGAAGTGGAAGCTGAGAAAACTAATGGAGATGAAGATTCGGGAGATCAAAATTTAGACACACAAGTTGTGAAAAAGAAAAAGAAAAGCATTCCAAATAATTTGAAAGACAGAGCTCAATTTAAGAGAAACAAAGCAAAGGGTCCAAACCCTCTTTCATGTTTGAAGAAAAAGGTCAAACCAAGCTCACATCCAGTTTCAGAGAAGAAGAAAGATGATGCTGCATCAAAGCGGACTCGAAAACGAAAGCGGTCGCGGAAGGCCAAAACGCCAACAAAGACAACCGTGCAATAGTTGGGTCCATATTTGTTGTGCCTTAGGAAATTTTGTTGCTTTGAGGTAAATGGTAGGATTATTTGGTTTTAACTTGAAGCATCCCTAGCTTGAGAATTAGAAAGTTGCAAGAAGTTAATGCTTACATAGATTTACCTGAGTTAAGATTTGAAAATCTATTATACTAAAAAAAATACTTGTCAATATTCTTTTGATTTCTTGATCATTATATAATAGAAGGAAATAGATCATTTCACCATTTAGGC

Coding sequence (CDS)

ATGAGAATAAAAAAACAAAAGCGTCAACGGAGAGCTGTGAGATTCTACACTACATGTTGTGGATTCAGGCCACCATTTAAAATCTTTTGCGATGGAACTTTTGTGCACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGATGCTGTTGCTAAAGCTGTTGGTGACAGAGTAAAGCTTTTCACCACCAGATGTGTACTCTTAGAGTTGAGGGCTCTTGGCCAATCCTACTCTGGAGCTTTTGAGGCAGCTAGTCAGCTGTTCACTGCGAGATGCAACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATCATTGATGTGATTGGTGAATCAAATCCTGAGCATTTCTTTGTTGCCACTCAAGATACTAATCTTAGGAAGCAGCTTCAACAGATACCTGGGGTCCCACTCATATTTGGTCTGAGAAATGCACTTTTCATGGAGCAACCATCTGATGCACAACGACAGTTTGTTAAGTCTTTAGAAGAAAAAAGGATGCACATTTCTGAGATGGAACGTAATTTATTGAAGAAAAAAATAAAGTATGAAGTGGAAGCTGAGAAAACTAATGGAGATGAAGATTCGGGAGATCAAAATTTAGACACACAAGTTGTGAAAAAGAAAAAGAAAAGCATTCCAAATAATTTGAAAGACAGAGCTCAATTTAAGAGAAACAAAGCAAAGGGTCCAAACCCTCTTTCATGTTTGAAGAAAAAGGTCAAACCAAGCTCACATCCAGTTTCAGAGAAGAAGAAAGATGATGCTGCATCAAAGCGGACTCGAAAACGAAAGCGGTCGCGGAAGGCCAAAACGCCAACAAAGACAACCGTGCAATAG

Protein sequence

MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKLFTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKIKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKKVKPSSHPVSEKKKDDAASKRTRKRKRSRKAKTPTKTTVQ

Homology

[Close]

BLAST of CaUC01G008980 vs. NCBI nr
Match: XP_004143766.1 (rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655273.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655274.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742195.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742196.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742197.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742198.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >KAE8648473.1 hypothetical protein Csa_007759 [Cucumis sativus])

HSP 1 Score: 479.6 bits (1233), Expect = 1.9e-131
Identity = 250/279 (89.61%), Postives = 263/279 (94.27%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFV+HLLSNQIMPAD+AVAK VGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCVLLEL+ALGQSYSGAFEAASQLFTARC+HEKRKSAEACI+DVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSD QRQFVKSLEEKRMH+SE+ER+LLKKK 
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180

Query: 181 KYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKKV 240
           KY VEAEKTN DED  DQNLDT V+KKKKK+IP+NLKDR QFKRNKAKGPNPLSCLKKKV
Sbjct: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLSCLKKKV 240

Query: 241 KPSSHPVSEKKKDD--AASKRTRKRKRSRKAKTPTKTTV 278
           KPS HPVSEKKKDD   A KRTRKRKRSRKAK PT+T +
Sbjct: 241 KPSPHPVSEKKKDDDSVAQKRTRKRKRSRKAKAPTETVM 279

[Close]

BLAST of CaUC01G008980 vs. NCBI nr
Match: XP_011655276.1 (rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 478.0 bits (1229), Expect = 5.5e-131
Identity = 249/278 (89.57%), Postives = 263/278 (94.60%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFV+HLLSNQIMPAD+AVAK VGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCVLLEL+ALGQSYSGAFEAASQLFTARC+HEKRKSAEACI+DVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSD QRQFVKSLEEKRMH+SE+ER+LLKKK 
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180

Query: 181 KYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKKV 240
           KY VEAEKTN DED  DQNLDT V+KKKKK+IP+NLKDR QFKRNKAKGPNPLSCLKKKV
Sbjct: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAKGPNPLSCLKKKV 240

Query: 241 KPSSHPVSEKKKDDA-ASKRTRKRKRSRKAKTPTKTTV 278
           KPS HPVSEKK DD+ A KRTRKRKRSRKAK PT+T +
Sbjct: 241 KPSPHPVSEKKDDDSVAQKRTRKRKRSRKAKAPTETVM 278

[Close]

BLAST of CaUC01G008980 vs. NCBI nr
Match: XP_008465424.1 (PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465433.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465440.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465448.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465455.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465460.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo])

HSP 1 Score: 469.2 bits (1206), Expect = 2.5e-128
Identity = 247/277 (89.17%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFV+HLLSNQIMPAD+AVAK VGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCVLLEL+ALGQSY+GAFEAASQLFTARC+HEKRKSAEACI+DVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYAGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QDTNLRKQLQQIPGVPLIFGLRN LFMEQPSD QRQFVKSLEEKRMH+SE ER+LLKKK+
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEKRMHMSEAERDLLKKKM 180

Query: 181 KYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKKV 240
           KY VEAEKTN DED GDQNLD QV+ KKKK+I +NLKDR QFKRNKAKGPNPLSCLKKKV
Sbjct: 181 KYVVEAEKTNEDEDLGDQNLDAQVL-KKKKNILSNLKDRPQFKRNKAKGPNPLSCLKKKV 240

Query: 241 KPSSHPVSEKKK--DDAASKRTRKRKRSRKAKTPTKT 276
           KPS HPVSEKKK  DD A KRTRKRKRSRKAK PT+T
Sbjct: 241 KPSPHPVSEKKKDDDDLAQKRTRKRKRSRKAKAPTET 276

[Close]

BLAST of CaUC01G008980 vs. NCBI nr
Match: XP_038906639.1 (rRNA-processing protein UTP23 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 439.9 bits (1130), Expect = 1.6e-119
Identity = 231/281 (82.21%), Postives = 253/281 (90.04%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           M IKKQKRQRRAVRFYTTCCGFRPPFKIF DGTFVHHL+SNQIMPADDA+AK VGD+VKL
Sbjct: 1   MGIKKQKRQRRAVRFYTTCCGFRPPFKIFLDGTFVHHLISNQIMPADDAIAKTVGDKVKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FT+RCV LELRALGQSYS  FEAA+QLFTARCNH +RKSAEACI DVIGESNPEHFF+AT
Sbjct: 61  FTSRCVRLELRALGQSYSRTFEAANQLFTARCNHVQRKSAEACIRDVIGESNPEHFFLAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QD NLR+QL++IPGVPLI+GLRNALFMEQPSD QRQFVKSLEE+RMH+SE ER+LLK+K 
Sbjct: 121 QDANLRQQLREIPGVPLIYGLRNALFMEQPSDVQRQFVKSLEEERMHMSEAERSLLKRKR 180

Query: 181 KYEVEAEKTNGDEDSGDQNLDTQVV--KKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKK 240
           KYEVE++KTNG ED GDQN + QV   KKKKKSIPNN+ DRAQFKRNKAKGPNPLSCLKK
Sbjct: 181 KYEVESDKTNGPEDFGDQNSEPQVFEKKKKKKSIPNNMIDRAQFKRNKAKGPNPLSCLKK 240

Query: 241 KVKPSSHPVSEKKKDD-----AASKRTRKRKRSRKAKTPTK 275
           KVKPSSHPV+EKKKDD     AA K+TRKRKRSRK K PT+
Sbjct: 241 KVKPSSHPVAEKKKDDGNDGNAAPKQTRKRKRSRKGKEPTE 281

[Close]

BLAST of CaUC01G008980 vs. NCBI nr
Match: XP_038906640.1 (rRNA-processing protein UTP23 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 436.0 bits (1120), Expect = 2.4e-118
Identity = 229/280 (81.79%), Postives = 252/280 (90.00%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           M IKKQKRQRRAVRFYTTCCGFRPPFKIF DGTFVHHL+SNQIMPADDA+AK VGD+VKL
Sbjct: 1   MGIKKQKRQRRAVRFYTTCCGFRPPFKIFLDGTFVHHLISNQIMPADDAIAKTVGDKVKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FT+RCV LELRALGQSYS  FEAA+QLFTARCNH +RKSAEACI DVIGESNPEHFF+AT
Sbjct: 61  FTSRCVRLELRALGQSYSRTFEAANQLFTARCNHVQRKSAEACIRDVIGESNPEHFFLAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QD NLR+QL++IPGVPLI+GLRNALFMEQPSD QRQFVKSLEE+RMH+SE ER+LLK+K 
Sbjct: 121 QDANLRQQLREIPGVPLIYGLRNALFMEQPSDVQRQFVKSLEEERMHMSEAERSLLKRKR 180

Query: 181 KYEVEAEKTNGDEDSGDQNLDTQVV--KKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKK 240
           KYEVE++KTNG ED GDQN + QV   KKKKKSIPNN+ DRAQFKRNKAKGPNPLSCLKK
Sbjct: 181 KYEVESDKTNGPEDFGDQNSEPQVFEKKKKKKSIPNNMIDRAQFKRNKAKGPNPLSCLKK 240

Query: 241 KVKPSSHPVSEKKKD----DAASKRTRKRKRSRKAKTPTK 275
           KVKPSSHPV+EKK D    +AA K+TRKRKRSRK K PT+
Sbjct: 241 KVKPSSHPVAEKKDDGNDGNAAPKQTRKRKRSRKGKEPTE 280

[Close]

BLAST of CaUC01G008980 vs. ExPASy Swiss-Prot
Match: Q9CX11 (rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-27
Identity = 92/274 (33.58%), Postives = 139/274 (50.73%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           M+I +QK  ++ + F+    G R P++I  DGTF    L  +I   D      +G+  +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLRDQLPRYLMGE-TQL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVA 120
            TTRCVL EL  LG+   GA   A +     C H K   S   C++ ++ E NP H+FVA
Sbjct: 61  CTTRCVLKELETLGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVA 120

Query: 121 TQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKK 180
           TQD NL  ++++ PG+PL+F ++N + +++PS     FVK++E  ++ +S  E+  +K+ 
Sbjct: 121 TQDQNLSVKVKRTPGIPLMFIIQNTIVLDKPSPRTVAFVKAVEAGQL-VSVHEKQSIKQ- 180

Query: 181 IKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKK 240
                                    +K+++  + N    R + K+ K  GPNPLSCLKKK
Sbjct: 181 -------------------------LKEEQGLVRNPDLRRRRRKKKKVGGPNPLSCLKKK 237

Query: 241 VK--PSSHPVSEKKKDDAASKRTRKRKRSRKAKT 272
            K   +  P SEKK         RKRKR R   T
Sbjct: 241 KKAQDTKSPASEKK---------RKRKRIRNRST 237

[Close]

BLAST of CaUC01G008980 vs. ExPASy Swiss-Prot
Match: Q9BRU9 (rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 3.4e-27
Identity = 91/273 (33.33%), Postives = 138/273 (50.55%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           M+I +QK  ++ + F+    G R P++I  DGTF    L  +I   +      +G+  +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGE-TQL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVA 120
            TTRCVL EL  LG+   GA   A +     C H K   S   C++ ++ E NP H+FVA
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVA 120

Query: 121 TQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKK 180
           TQD NL  ++++ PGVPL+F ++N + +++PS     FVK++E  ++ +S  E    K+ 
Sbjct: 121 TQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQL-VSVHE----KES 180

Query: 181 IKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKK 240
           IK+                        K+++ +  N +   + KR K  GPNPLSCLKKK
Sbjct: 181 IKH-----------------------LKEEQGLVKNTEQSRRKKRKKISGPNPLSCLKKK 237

Query: 241 VKPSSHPVSEKKKDDAASKRTRKRKRSRKAKTP 273
            K             +AS++ RKRKR R    P
Sbjct: 241 KKAPD-------TQSSASEKKRKRKRIRNRSNP 237

[Close]

BLAST of CaUC01G008980 vs. ExPASy Swiss-Prot
Match: Q08DU1 (rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-25
Identity = 84/272 (30.88%), Postives = 140/272 (51.47%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           M+I +QK  ++ + F+    G R P++I  DGTF    L  +I    + + + +    +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQ-LREQLPRYLMAETQL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVA 120
            TTRCVL EL  LG+   GA   A +     C H K   S   C++ ++ + NP H+F+A
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLA 120

Query: 121 TQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKK 180
           TQD NL  ++++ PG+PL+F ++N + +++PS     FVK++E  ++ +S  E+  +++ 
Sbjct: 121 TQDQNLSMKVKKKPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESGQL-VSVHEKQSIRQ- 180

Query: 181 IKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKK 240
                                      K+++ +  + + R + KR K  GPNPLSCLKKK
Sbjct: 181 --------------------------LKEEQGLVKDPEQRRRKKRKKVSGPNPLSCLKKK 236

Query: 241 VKPSSHPVSEKKKDDAASKRTRKRKRSRKAKT 272
            K        +  + +AS++ RKRKR R   T
Sbjct: 241 KK-------TQDTNSSASEKKRKRKRIRNRST 236

[Close]

BLAST of CaUC01G008980 vs. ExPASy Swiss-Prot
Match: Q12339 (rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP23 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.7e-15
Identity = 79/275 (28.73%), Postives = 126/275 (45.82%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MR K+ K  R+ +  Y+    FR P+++  D   V    +N        + + +   VK+
Sbjct: 1   MRQKRAKSYRKQLLVYSHTFKFREPYQVLVDNQLVLE-CNNSNFNLPSGLKRTLQADVKV 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKR--KSAEACIIDVIGES--NPEHF 120
             T+C +  L        GA   A Q    RCNH  +  KS   CI  V+  S  N   +
Sbjct: 61  MITQCCIQALYETRN--DGAINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKHRY 120

Query: 121 FVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLL 180
            VA+QD +LR++L+ +PGVPLI   R+ + ME  S A  +  K  EE++++    + N+ 
Sbjct: 121 VVASQDIDLRRKLRTVPGVPLIHLTRSVMVMEPLSTASAKASKITEEQKLYKGLNDPNIE 180

Query: 181 KKKIKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCL 240
           K               ++SGD +    + KK+K                  K PNPLS +
Sbjct: 181 KL--------------QESGDGSGKESITKKRKLG---------------PKAPNPLS-V 240

Query: 241 KKKVKPSSHPVSEKKKDDAASKRTRKRKRSRKAKT 272
           KKK K +S     K K+D + ++ ++R+R  K+ T
Sbjct: 241 KKKKKVNSPSDEVKDKEDTSKEKKKRRRRKHKSNT 242

[Close]

BLAST of CaUC01G008980 vs. ExPASy Swiss-Prot
Match: O74862 (rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp23 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-14
Identity = 80/273 (29.30%), Postives = 123/273 (45.05%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MR K+ K  R+ +  Y    GFR P+++  D  F+   LS Q +    A+A+ V   +K 
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADFLKD-LSQQKIDIQAALARTVQGAIKP 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNH-EKRKSAEACIIDV--IGESNPEHFF 120
             T+C + +L +           A      RC H ++  S   CI  V  I   N   + 
Sbjct: 61  MITQCCIRQLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYV 120

Query: 121 VATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLK 180
           VATQD  LR+ L+ +PGVPLI+  R+ + +E  S A      + E  +M +S+ E+ LL 
Sbjct: 121 VATQDPELRQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEEKLLLS 180

Query: 181 KKIKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLK 240
            K +    A +   D+    ++ D   +   + S P     +A  KR   KGPNPLS  K
Sbjct: 181 GKKR---SANELAIDDQDTKESTD---LAGTEDSAP-----KANKKRKGPKGPNPLSIKK 240

Query: 241 KKVKPSSHPVSEKKK-----DDAASKRTRKRKR 266
           +  K  +H   E         D   ++  +RKR
Sbjct: 241 RSSK--NHTTDEPTLPVNIIGDVGERKKHRRKR 259

[Close]

BLAST of CaUC01G008980 vs. ExPASy TrEMBL
Match: A0A1S3CNY6 (rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.2e-128
Identity = 247/277 (89.17%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFV+HLLSNQIMPAD+AVAK VGDRVKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCVLLEL+ALGQSY+GAFEAASQLFTARC+HEKRKSAEACI+DVIGESNPEHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYAGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QDTNLRKQLQQIPGVPLIFGLRN LFMEQPSD QRQFVKSLEEKRMH+SE ER+LLKKK+
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEKRMHMSEAERDLLKKKM 180

Query: 181 KYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKKV 240
           KY VEAEKTN DED GDQNLD QV+ KKKK+I +NLKDR QFKRNKAKGPNPLSCLKKKV
Sbjct: 181 KYVVEAEKTNEDEDLGDQNLDAQVL-KKKKNILSNLKDRPQFKRNKAKGPNPLSCLKKKV 240

Query: 241 KPSSHPVSEKKK--DDAASKRTRKRKRSRKAKTPTKT 276
           KPS HPVSEKKK  DD A KRTRKRKRSRKAK PT+T
Sbjct: 241 KPSPHPVSEKKKDDDDLAQKRTRKRKRSRKAKAPTET 276

[Close]

BLAST of CaUC01G008980 vs. ExPASy TrEMBL
Match: A0A0A0KTT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G466330 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 7.3e-105
Identity = 208/236 (88.14%), Postives = 220/236 (93.22%), Query Frame = 0


Query: 44  MPADDAVAKAVGDRVKLFTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEAC 103
           MPAD+AVAK VGDRVKLFTTRCVLLEL+ALGQSYSGAFEAASQLFTARC+HEKRKSAEAC
Sbjct: 1   MPADEAVAKTVGDRVKLFTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEAC 60

Query: 104 IIDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEE 163
           I+DVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSD QRQFVKSLEE
Sbjct: 61  ILDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEE 120

Query: 164 KRMHISEMERNLLKKKIKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFK 223
           KRMH+SE+ER+LLKKK KY VEAEKTN DED  DQNLDT V+KKKKK+IP+NLKDR QFK
Sbjct: 121 KRMHVSEVERDLLKKKTKYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFK 180

Query: 224 RNKAKGPNPLSCLKKKVKPSSHPVSEKKKDD--AASKRTRKRKRSRKAKTPTKTTV 278
           RNKAKGPNPLSCLKKKVKPS HPVSEKKKDD   A KRTRKRKRSRKAK PT+T +
Sbjct: 181 RNKAKGPNPLSCLKKKVKPSPHPVSEKKKDDDSVAQKRTRKRKRSRKAKAPTETVM 236

[Close]

BLAST of CaUC01G008980 vs. ExPASy TrEMBL
Match: A0A6J1CLD6 (rRNA-processing protein UTP23 homolog OS=Momordica charantia OX=3673 GN=LOC111012016 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.2e-100
Identity = 200/278 (71.94%), Postives = 229/278 (82.37%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MR K+QKR RR VRFY  C GFR PFK+ CDGTFVHHLLSN+I+PAD+A+AK +G  +KL
Sbjct: 1   MRFKRQKRHRRVVRFYAACFGFRQPFKVLCDGTFVHHLLSNRIVPADNALAKTIGGPIKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCVL EL+ALGQSYS AF+AAS+L  ARC+HE+RKSAEACI DVIGESN EHFFVAT
Sbjct: 61  FTTRCVLSELKALGQSYSEAFDAASRLLIARCDHERRKSAEACISDVIGESNAEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QDT+LRK+LQ+IPGVPL++GLRNALFMEQPS  QRQFVKS EE+R+H+SE+ER+LLKK+ 
Sbjct: 121 QDTDLRKKLQEIPGVPLVYGLRNALFMEQPSVLQRQFVKSSEEERLHMSELERDLLKKR- 180

Query: 181 KYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLKKKV 240
           KY VE E+TN D   GDQNL+TQ +KK+  S  N LKD+ QFKR KAKGPNPLSC KKK 
Sbjct: 181 KYRVETEETNEDRGLGDQNLETQAMKKRSTS--NELKDKIQFKRKKAKGPNPLSCKKKKE 240

Query: 241 KPSSHPVSEKKK---DDAASKRTRKRKRSRKAKTPTKT 276
            PS HPVSEK K   D AA  RTRKRKRSRKAK P  T
Sbjct: 241 NPSQHPVSEKHKKDNDSAAESRTRKRKRSRKAKMPATT 275

[Close]

BLAST of CaUC01G008980 vs. ExPASy TrEMBL
Match: A0A6J1JT87 (rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487635 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.4e-95
Identity = 199/280 (71.07%), Postives = 226/280 (80.71%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MR KKQKR R+AVRFYTTC GFR PFK+ CDGTFVHHLLSNQI+PAD A+AK +G RVK+
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCVLLEL+ALG SYS AFEAAS L TARC+HE RK A  CI++VIG+SN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QDT+L+KQLQ+IPGVPLIFGLRNALFMEQP+  +RQFVKS EEKR HISE+E NLL+K  
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 K-YEVEAEKTNGDEDSGDQNLDTQVV--KKKKKSIPNNLKDRAQFKRNKAKGPNPLSCL- 240
           K  E E E TN D D   +N + QV+  KKKK+   N+LKDR QFKR K KGPNPLSCL 
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTKGPNPLSCLK 240

Query: 241 -KKKVKPSSHPVSEKKKDDAASKRTRKRKRSRKAKTPTKT 276
            KKKV P+ HPVSEKK DD  +KRTRKRKR+RK KT  +T
Sbjct: 241 KKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKTKTTAET 280

[Close]

BLAST of CaUC01G008980 vs. ExPASy TrEMBL
Match: A0A6J1E579 (rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430840 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.4e-95
Identity = 199/280 (71.07%), Postives = 226/280 (80.71%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MR KKQKR R+AVRFYTTC GFR PFK+ CDGTFVHHLLSNQI+PAD A+AK +G RVK+
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCVLLEL+ALG SYS AFEAAS L TARC+HE RK A  CI++VIG+SN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKKKI 180
           QDT+L+KQLQ+IPGVPLIFGLRNALFMEQP+  +RQFVKS EEKR HISE+E NLL+K  
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 K-YEVEAEKTNGDEDSGDQNLDTQVV--KKKKKSIPNNLKDRAQFKRNKAKGPNPLSCL- 240
           K  E E E TN D D   +N + QV+  KKKK+   N+LKDR QFKR K KGPNPLSCL 
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTKGPNPLSCLK 240

Query: 241 -KKKVKPSSHPVSEKKKDDAASKRTRKRKRSRKAKTPTKT 276
            KKKV P+ HPVSEKK DD  +KRTRKRKR+RK KT  +T
Sbjct: 241 KKKKVDPNQHPVSEKKADDNTTKRTRKRKRARKTKTTAET 280

[Close]

BLAST of CaUC01G008980 vs. TAIR 10
Match: AT2G34570.1 (PIN domain-like family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-62
Identity = 138/287 (48.08%), Postives = 187/287 (65.16%), Query Frame = 0


Query: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKL 60
           MR+K+QK+ RR VRF+T C GFR P+K+ CDGTFVHHL++N+I PAD AV++ +G  VKL
Sbjct: 1   MRVKRQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKL 60

Query: 61  FTTRCVLLELRALGQSYSGAFEAASQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVAT 120
           FTTRCV+ EL  LG+ ++ + EAA  L TA C HE+ K+A+ C+ +VIG  N EHFF+ T
Sbjct: 61  FTTRCVIAELEKLGKDFAESLEAAQTLNTATCEHEEAKTADECLSEVIGVQNTEHFFLGT 120

Query: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDAQRQFVKSLEEKRMHISEMERNLLKK-- 180
           QD   R++LQQ   VPL+FGLRN L ++QPSD QRQ  K  E KR+ +++ E+ LL K  
Sbjct: 121 QDAEFRRKLQQESIVPLVFGLRNILLIDQPSDFQRQSAKDSENKRLTMTDTEKKLLVKRT 180

Query: 181 -KIKYEVEAEKTNGDEDSGDQNLDTQVVKKKKKSIPNNLKDRAQFKRNKAKGPNPLSCLK 240
            KI      E T  +E+ G      +VV  K       +KDR QFKRN+AKGPNPLSC+K
Sbjct: 181 AKIIASNRKEATIANEEWG----MPRVVSTKNGL---GVKDRPQFKRNRAKGPNPLSCMK 240

Query: 241 KKVK--------PSSHPVSEKKKDDAASKRTRKRKRSRKAKTPTKTT 277
           KK +         S+    ++KK+  +  + R RKRS+K K+  + T
Sbjct: 241 KKKENPQSKSKADSNSNAQKEKKEGGSDTQKRSRKRSKKGKSGPERT 280

[Close]

BLAST of CaUC01G008980 vs. TAIR 10
Match: AT2G46230.1 (PIN domain-like family protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09
Identity = 37/132 (28.03%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 24  PPFKIFCDGTFVHHLLSNQIMPADDAVAKAVGDRVKLFTTRCVLLELRALGQSYSGAFEA 83
           PP+++  D  F++  + N+I   +  +   +        T CV+ EL  LGQ Y  A   
Sbjct: 61  PPYRVLVDTNFINFSIQNKI-DLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALRI 120

Query: 84  ASQLFTAR--CNHEKRKSAEACIIDVIGESNPEHFFVATQDTNLRKQLQQIPGVPLIFGL 143
           A      R  C H K   A+ C++D +  +  + F VAT D +L++++++IPGVP+++  
Sbjct: 121 AKDPHFERLPCIH-KGTYADDCLVDRV--TQHKCFIVATCDRDLKRRIRKIPGVPIMYVT 180

Query: 144 RNALFMEQPSDA 154
                +E+  +A
Sbjct: 181 NRKYSIEKLPEA 188

The following BLAST results are available for this feature:

BLAST of CaUC01G008980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143766.1	1.9e-131	89.61	rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655273...	[more]
XP_011655276.1	5.5e-131	89.57	rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus]	[more]
XP_008465424.1	2.5e-128	89.17	PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465433.1 ...	[more]
XP_038906639.1	1.6e-119	82.21	rRNA-processing protein UTP23 homolog isoform X1 [Benincasa hispida]	[more]
XP_038906640.1	2.4e-118	81.79	rRNA-processing protein UTP23 homolog isoform X2 [Benincasa hispida]	[more]

BLAST of CaUC01G008980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CX11	1.5e-27	33.58	rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=...	[more]
Q9BRU9	3.4e-27	33.33	rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2	[more]
Q08DU1	1.9e-25	30.88	rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1	[more]
Q12339	6.7e-15	28.73	rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]
O74862	3.3e-14	29.30	rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of CaUC01G008980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CNY6	1.2e-128	89.17	rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE...	[more]
A0A0A0KTT8	7.3e-105	88.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G466330 PE=4 SV=1	[more]
A0A6J1CLD6	3.2e-100	71.94	rRNA-processing protein UTP23 homolog OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1JT87	1.4e-95	71.07	rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E579	1.4e-95	71.07	rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of CaUC01G008980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34570.1	1.5e-62	48.08	PIN domain-like family protein	[more]
AT2G46230.1	5.6e-09	28.03	PIN domain-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.1010		coord: 1..158 e-value: 9.5E-48 score: 163.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..208
None	No IPR available	PANTHER	PTHR12416:SF3	RRNA-PROCESSING PROTEIN UTP23 HOMOLOG	coord: 1..273
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..273
None	No IPR available	CDD	cd08553	PIN_Fcf1-like	coord: 26..148 e-value: 1.02177E-52 score: 166.217
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 55..149 e-value: 5.1E-26 score: 90.9
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 24..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G008980.1	CaUC01G008980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome