CaUC01G008620 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G008620
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB7
LocationCiama_Chr01: 9805355 .. 9814967 (+)
RNA-Seq ExpressionCaUC01G008620
SyntenyCaUC01G008620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGGTTTGCTATCCAAGAGTGTCAATGTTGATAATAGAACAATTTCCATAGGCTCATTAAGAGCTATATGACTTGAAATTTTCTACTCAGCTTCAAGAAGGAACGACACATAGGTTGATGGACTTGATAGGTTTCCATTTCTTTTCCCTCTCTATTCCAATTTTTATTTTTGTAGATTGCTTGCCTTTATAGATCGTTTCAACGTGATTTCTGATATGTGTTATTGAAGTTTACTTGGCTGTAGTTTTTACTCTTTCTTCATTGATCACTTTTGTTTTGCTAATTGATGTCAGGAGTTGAAAAAATTAATAAGGGACAAACACTTCTTCAACTAATGTGGTACATGAGTTAGGTTCATTGGCAAATTCAACAGGACTCTTGGCCTTCTAATAAAGTTTTAGTTTGTATGTAGATTGATCTATTGATTACTTTATTTCTATATTTTCTTTATTTCAATAATTTTTTTAAACTTCTTTTTACTTGATACTTTTTTTGTAGTTTGATGAAGAGTTATTCACTGCATGCAATGTCTTGACCACAAACACAATTAAGTTGGAGTTATCTTGGAATTTGATAACGACATGTTTTGTAATTTATAAATTTATGTTGTGTTTCATCTCGAAGTTTTTAGTACTCATTACTATCTCTCTTTTTTGTTGGAATATATGATCTTGTATTGAATGATTATTTTTTATAATGTTTATTTTGGGGATTATATAAATATAATTTTATTTGACTTTTAATATGTATCAGCGTATGAAACACAACAATAGAATTATGAATATTAGATAAGTTATAAAATATGCAAAAATGAGATTCCTTAGCTATAAAAAGCTAATAAATGCTATGAAGACAAAAAGTTTTGACAATAAAGCTTATTATAGCTTTCATTAGTTGAGGTAGGGGTGAGAGAAAATGGAAGAGGTGATGAGTTGTAGATTAGGTAAGAGCATTTTTAACTTGTTTTTTTTCTTTTTTAAGGATACCAATGCAACTTTTAAGAGTTTATATTTATGCAATGAGATATTAACGGTTTTTGTTTATATATCAAGAGTAATGGCATTTTTTAACATTTCTTTAAGTTTAAGGGTATTTTTTTAAACTTTTGGAAGTTTAAGGGTATTTTTTTAAACTTTTGGAAGTTTAAGGATATTTTTAAAACAAAACATTAACGGTTCCATCCAAAACTAATGATAAGAGTACTTTTGAACTCTTTTTTAAAAATTCAAGGGTATTTTTTAAACTTTTAAAAGTTCAAGATATTTTTGACACTAAGTACAAAGTTCAAGGGTATTTTGTATAATTTAGCCTTAAATAAATGACTCGACTAATTTGAACCAAGCCGACTCAAATGTTTCATAGTTGGGTTGAAGAAATTTACAACCCAAACAATTGAGTTGGGTCTAAAAAATGCTTCAACCTGACGCAACCCAACCCTCAAACATCCTTAGTCATAGCCAAATTATTTTATATTTGACAATTTATCCTTTTAGTATGTTGGGAGATTTTAATTTTGGTATTTTTTTGAGATTCTTTTATTTTGACTTAAATTTTGGTTTTTATTTTGGTTGCTCAAAATTTTGGTGTAAGAATTAGAAAAACAAGAGAAAAGTGAGAGTATCTATATAAAAAAAAATTGAGGATATCTATATAATTTGTTTTAAAATTAGTTTTAATCCAAGAAAACTTCAAACAAATTACTCAAGAACTAGACTTAAGCGATTGTGCCTACCAGTCAAGACAGGAAGGTGGGACGCTATCCCGCCTCAGTCATTTCCAAGGAGTAATTCTCAAAGTGCTTTCTAGGTTCACGAACACGATCCGGAAATCGTCCTTTTTTTTTCTCCACTCGGACCAACCCGCCTACTCGGCTTCATATATGATTACAGGTCGAACAAAAACAAAATACTTTTTCTTAGTAGGCGTGATCCACTGGACATAAATCCAATTTTTCAATTTTTTTGATTTCTTAGATTTTTTTTTTTTACTCTTTCAGGTGGTATCAAGATGCCATTGTGTCGGGATATCTTATCCATCCCTCCAGGAAAATGTATATCTCTAGAAAATATTTTGAGTTCAATCCTTTTTTTTCTTTCTCCACTCAAATTTAGTGTCATGTTAAGTAGATTTTGAAAGTATTTGAAAAAATAAGGTGATTTGCAAACTATTTGGAAAAATAGGGCGATATTCAATTCAATCTGTTGGAGAGACTGAACACTTTTTTTAAAAAAATTATTTCTCTCGCTTTTTAGTCAATTAAAAGGTGCATCTTTTTTTCTCAAATTATTTCATTTTCAAAATATCCATAAATTTTATACTTTGCGTAAAAAATAATCTTGGACTTTCAAAAGTTTCAAAGGTACTCTTAAACTTTCAGAATGAGTTAAAAAAAGTAACTTTAAATTTGTTTTGGAGGGAAACCATTAGTGTTTTGTGTAAAAAATACTCTGAACTTTCAAAAGTTTAAAAAATACCCCTAAATTTAAAAAAAAAAATTAAAAAACCGTTAATACTGTCTTACTTCTCCATTTTCCCTCTTTTTTCTCCTCTCACTTCTTCAATACTCTCCTACTCCCCTTTTTGTTAAATGTTTACATTTGTATATCTAATAAATAAATAAATAAGTGCACACTTTAGTTAAGGTATACTAACTATAATAAGAAGAAAGAGAATAATAGAAACACCAAAGGATTTTAGGACTTAAATGTTTTAAGAAAGTTGTATGTTAGTAATGGAGCGTGTGTTAATAGCCAAATAATTTTTTATTTGACTATTTACTGTTTTGGTATATTAAAGGAAGATTTTGATTTTGATTTTGAAATTTTGTGAGATTTTTTTGTTTTAACTTAAAATTTTTGTTTTTATTTTGGTTACTGAAAAATTTGGTGTAAGAATTAGAAAAATGAGAGTATCTATATAAAAAAAAATGAAGATATCTATATAATTTGTTTTATAATTGACTTTTTTTTTCTTTCTTTCTTTTTTTTTTTTTAACTCAATAGAACTTCAAACAAATTGATCATCATATTAACGATAGGAGCATTATTATTATTATTATTTTTTTTAAATTTTACCGTTATTTTTTTCAACAAGGTATCAACGGTTGTTCATATACTAACAGTGAAGGTATTTTTGAATTTTTTAGAGGTGTCAAGGTATTTTTGAAACTTTTGAAAGTTTAGGGTATTTTTTAAACAAAACTTTAACGATTTCCATCCAAACCTAATGACAATGGCATTTTTTAACTATTTTTGAAAATTTAGAGATATTTTTGAAATTTTTAAAAGTTTTAGGATATTTTTGACTCAAAATGCAAAATTCAGAGATATTTCTTTTATAATGTAACCAATTTTATCTTCGTTATTTTAAATTTTTTCCTAATGGATATAATTTTTATTATATATATATATATATTTTTTTTTTTATCTTTTATCACTTTTTTGGCTTTATAAATTTTTGTTTACCTTTTAATCAAATTATAATATATATATATATATATATATATATATATATATATATATAATTTTCAAAAGAAAACATGATTGTTATAAAGTAACCATTAGTCATTAAATCAACAAATTTCTTTTCCCATTGAAAAAATAGATAATATTTTCTAAATACCAAATTATAAAATTTGTTTACACAACAAAATCACACAATAAATATGTAAAAGAAAGGGAAGTAACAATTATATTTAACCCTGATTTTGCTATAGTAAAATTGTTTGCAATGGAGTGGTTAAAACTTAAAATAACTAACTCTACCTCTCTCCAATGTTTTCAATGGCTCTATCTATCGACGGTCAACTCTGACAACTAACAAGACCATCTTCAACCCCTAATTTAGGCGATAACCACCTTTGGTGACTAACTCCTTCGAATTAAACTAGAGAATAAGATTTTAAAAAAATGCCAAGGAATCTTTTACAACAATATCTACATTCTAATTTATTTGATATAATTTAATAACATATTTTCTTCGTAGAACATGCTCAATCAACAAAATTTCTTGATTTGCTTGTTTTCAAATTTTCATCGAAGTGCTTATTTTCGTTGAATTTAGGGGTCGAGATGGTCTTCGTTGGAGTTGGTTGCTAGAGGTGATCATCGATGGGTAAAGTCATTTGAAATCGGAGGGGTAGAATTGGTTATTTTAAGTTTTAACAACTTGGTTGTGAATAACTTTAATGTAGGAAAATGAGCGTTAAATAACCGTTACTTCTTATTGTTTTACATATTTATTGTATAATTTTGTCGAGTAAACAAATTTTATAGTTTGGTTTTTAGAAAACATTATCTATTTTTTCAATGAGAAAGAAATTTGTTGATTTGATGACTAACTGTTACTTTAAAACAACAATATTTTTCTTACCAATTTTGAAACTTGTATATATTTATAATTTGGTTAAAAGATAAATTAAAATTATAAAGCAAAAAATGTATAAAAGATGAAACAAATCTAAAATAAAAAATTTATCAAATATGAAAAGGAAAAATAAAATAACAAAGATGAAAAAAAGAAAAAAAAACAATGAATTGATTATAGAAAAAAGATGCACCCAGTTGAATAGACTTAAAAAAGCCAAAGAAATATATATAAAGAAAAAAAAAAAAAGAAAAAAAAAGTGCATTGAGTCTTTGCAACGGACTGAATTGAACAACACCACAAAATACCCCTATTTTTGCAAATAGGTTGCAAATCATCACATTTTTACAAATACGTTCTAAATCCACCCTAAAATGACATAAATTCACCCTGGGAGCATTTTTAAATTTTTTTTTTTTTAAAATATTTTAGAGTTATTTTTCTAACGAGTTATTAACAATTTTTGTTAGTGAAAGTATTTGTTGAAATTTTTCTTAGTTTAAGAATATTTTTGAAACAAAGCTTTAATAGTTTCCATTCAAAACTAATCGCAATAGTATTTTTGAACATTTTTATAAAGTTTAAGAATTTAGGGTATTTTTGTCACAAAATACAAAAATTTAAGAAAATTGTTGATAATTTAGTCGAACAGAAAAATGGTTAAAAATAATTATAAATATAGCAAAATTTTACTTTACATTTATGATAAATTATGATAAATCCAAATGGACATTTATCTAAAATTTTGTTATATTTGTAAATAATTTAATATTTCTTTTATATTTAAAATATTTTTTCTTAGAAATAACAATTTACGAAGGAATACCCTACACTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTTGACGCTGTTGCCGCGCCACCGTCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTTCTCTCTCCGTTCAGCGCCGTCGCCTTCTCTCTCCGTTCAGCGCCGTTGCCTTCTCTCTCCGTTCAGCGCCGTCGCCTCCCTCCTACCGGTATTCTCTCGATCTCCATCTATGGCGTTCTTCACTACAACTCACGTTAGAACTTGTGTAACGAAAGAAACCGGATGTTGCTTTACTTAACCGAACAATCTCAATATATAGTTGGATTTGATGTTAACCTAAATCATTGAATAGACTTTCCCCCCTATTTTTTAGCATCACATCACATTTTATCCCTAACTAATATCTTGGTCATTTTATCTGCATATAGTTGGGTTTGATGTTAAGATCAAATGCTCTGAATTTATTGTTTGAAGATCGATTCTGTCTAACATCGGTTGTTCCCAAATTGAGTCGAGAAAACCCTATTCTTTAATTCACATCAGGCTAGTTGTTTCTTTAACCTATGATTCTCAGATTCTTGATTCACTCCTTCGGCATGTGTTTGACTCTAATCTTTGTATTGAACATAGAAGTTGCATTCATTGAGTTCATGTGGGTTTTCGTTCAGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGGTTTCTTTACTGTTTTCCCTACCTTTTGTATGCTAGAACATTCCTGTTGCTCTTATTTTATTTTATTTTTTTTAACTTTGGCGGAAAATGCATGTGATAAGATGTAGTGCTAGATTTGATTTTGGATTATGCGATCCTTGGGTGGCATCCCATTAGCTTTATTTCACCTATAAGGCGGCAATTATATGATTTTTTTTTGCATTATATTTAACTTTTCTTCTTAGTGTTTTTAATGGATGATGTAATAATGTGAAAACATATTGTTAATATGTTTGATAGAGAGAGGGGTTGGACATCTGAGAAACATGTGAAAACTGAAAGGATAGTTGTTTTAATAGACATCTCAGATTTTTACATCAGTTGTTTAAATAAACATCCAACTCTCATTGAAGCAATGAAACTTCCAAGTTCCAATGGGGTGAGGAACAAAAGTTCAGATTACTAATTGGCAATCCATGGTGGCCACCTACGTAGGAATTACGAGTTTCTTTGATACCAAAATGTTGTAGGGTCAGACGAGTTGTCCTGTGAAATTAGTTGAGATCTGTGTAGGTTGGCTTGGACACTCACGGATATTAAAAAAAATTGGGCAAGATGTTGGTGGTCAAATATTAGGGAGAATTTTTATTTATCTATACTAGACATGTTTTTAATTTTTAAATCTTGATTAGAAATGTTCAAAGAAGTGAGAATTACAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAATTTGAAGGTGGAAGTAGTGTCCATAGGCTTCATTTTCAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGTTAGGATGGTATTGGGTCACACTCCATTGATATTAGAATTAGGGTAACTTTTTCTTGGTTCCTTCACCCTTATGTTTAATGAACGTATGATCTTTACTATTCAAATCAGGGGAAGACATCTCCTCTAACACCATGCATAAAGGCTTAGAATTGCCTTAAGGAGCATAACTGAGGTCTGATGGTGGTTTAAATTTTGTTTCCTAGCATTTTTCCTGTGGTGCATGGTAACATAAAATTCTATTCTGATGCATAAGCATGTCAGTTCATCTTTATATAAAGGACAACATAATCAGTTCATGAACAGATGAAAGCAAATAAAACAGATTAATGGATGATATTTCTTTTGAACGTTTGATACTTCTTTTCAACTGGTGAACGGTTGGCGGGATTTCGTTATTGATAAAATTTTGTATGTTGACACAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGGTATATATTTGTCACATTTTTACTATCTAGAAAGTAATTTATTAGTTTATTTTAAATAATAAATACATTAATGACTGCAACTGCAACTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTATATATTTATAGCCAATTTCAATTATCATCTTTTTTCTCTTTGGTTCTCTTTACAAGCCACCAACGATCTTGGGGCTTGGACAGAAAAGTAACTATATGAAAAAGTGGATCGTGAAAATATTGAGAGAGTTTCACAAATTCGTTATGAATGCTGTCACCCGTAGTGTTCGTTGTGCAGTGAAGTACTTAAGCAAGCTAACACTTCTTCTCAAGTTTCTAGTTTGTTCTTTTGATATTTCTCAGCGTTGTTGTGGCACGTTGGATCAAATCTAAATGGACCAAAACACCTCCTACTTAATTACTCCCACTAAACATTGCAACAGCAACATCTTGGCTTTTATTCCTGTCATATATTTCCCCCATAAATGTTTTTAGCTTTCAATTTTCACTAAAATTAGTTATCTCACATCTTGTGATTCAGTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTATGTTTCTATAGTACATGCATTCTCTAACATAAATTGATAATGCTCTTGTGTTAAATTTATCGAATTATTTCTATTCTCTTGTAGGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTGTAATGCCTTTCTTCCGTATTTAGAATTGTTTTTCTTTTTAAAAAAAATTATTTGTTCTGTCCTCTGCACGTGCATGTTAATTTTAAATTTCTATGCAAATTTAGTGCTTCGCCTTCATTCTTACAGTTTTTAGATCAAAGGGATTCCCTTGGTAGCTAAGAATTGAAAGGTTCCTAAGTTTTTTAAATCCTGAATAATTAAAAATTTTTCCCCTTTTATCTCAGTTTTGGAGTAGGTGCAAATGTTGATATTTTAGTGATAGAAAAAATATATTGGGCTGAATGAATCTTAGTTTTGAGATTCTTTTAAACTTTTTGCATGAAAGTTCAAAAGTTGTGTCCAAAGGTACTGTTGATCTATTTAGCATATATGCTCTCAAGTGGTGAAAATATTAAAACTTGATAACTCCATGTTAGTTGCTTTTTGTGACTTTGGTAGAATTGCGTGCGATTGTCAAATTCTGAAATCTGTTGTGTCTCATTTAACTATTACTGCTTTTGTTTGCAGTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGTGTGATCAATGACCCTTCCGCGGCTTAGGTGTTAATCTCGTTCAAGAGATTCTTTGAGTTGCCAGTTTGTATATTGTTACTTATTAACCTTGACATTGAAAAAAATTCTATTTTGCTGTATAGTTTTTGCATTTTCTCAGCTGTTTATCCATTTACTTATATGGATATGGATCCTTTTGGTAATTACTTGGAGTGTTGGCATTTGGAATGAGAAACATATTCATAGGGTTAAATTATAAACTTTAGAGAGTTAGAATGTAGTTTAAAGTTTATAGATCTTTATGGTTTGATCAACTTTATAAATAGTCCTCTTTGTTA

mRNA sequence

ATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGATTGCTTGCCTTTATAGATCGTTTCAACTTTGATGAAGAGTTATTCACTGCATGCAATGTCTTGACCACAAACACAATTAAAAATAACAATTTACGAAGGAATACCCTACACTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTTGACGCTGTTGCCGCGCCACCGTCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTTCTCTCTCCGTTCAGCGCCGTCGCCTTCTCTCTCCGTTCAGCGCCGTTGCCTTCTCTCTCCGTTCAGCGCCGTCGCCTCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGTGTGATCAATGACCCTTCCGCGGCTTAGGTGTTAATCTCGTTCAAGAGATTCTTTGAGTTGCCAGTTTGTATATTGTTACTTATTAACCTTGACATTGAAAAAAATTCTATTTTGCTGTATAGTTTTTGCATTTTCTCAGCTGTTTATCCATTTACTTATATGGATATGGATCCTTTTGGTAATTACTTGGAGTGTTGGCATTTGGAATGAGAAACATATTCATAGGGTTAAATTATAAACTTTAGAGAGTTAGAATGTAGTTTAAAGTTTATAGATCTTTATGGTTTGATCAACTTTATAAATAGTCCTCTTTGTTA

Coding sequence (CDS)

ATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGATTGCTTGCCTTTATAGATCGTTTCAACTTTGATGAAGAGTTATTCACTGCATGCAATGTCTTGACCACAAACACAATTAAAAATAACAATTTACGAAGGAATACCCTACACTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTTGACGCTGTTGCCGCGCCACCGTCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTTCTCTCTCCGTTCAGCGCCGTCGCCTTCTCTCTCCGTTCAGCGCCGTTGCCTTCTCTCTCCGTTCAGCGCCGTCGCCTCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGTGTGATCAATGACCCTTCCGCGGCTTAG

Protein sequence

MVHKDVSPDAITCTKAKKYKECLDLLPRLLAFIDRFNFDEELFTACNVLTTNTIKNNNLRRNTLHFHPFELRFQFHSHLLAFSLSLLDAVAAPPSLSVQRRLLSPFSAVAFSLRSAPSPSLSVQRRCLLSPFSAVASLLPVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Homology
[Close]
BLAST of CaUC01G008620 vs. NCBI nr
Match: KAG6579070.1 (hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.2 bits (944), Expect = 7.1e-98
Identity = 187/219 (85.39%), Postives = 197/219 (89.95%), Query Frame = 0 

Query: 113 LRSAPSPSLSVQRRCLLSPFSAVASLLPV---------KRAASMFFHIVLERNMQLHPRH 172
           L S+ SP L++     LSPFSA A+ LP+          + A+MFFHIVLERNMQLHPRH
Sbjct: 42  LTSSSSPCLTLLSARRLSPFSATAASLPLCPAAAASLPVQGATMFFHIVLERNMQLHPRH 101

Query: 173 FGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVF 232
           FGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLI DGTGFVTFPVKYQCVVF
Sbjct: 102 FGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVF 161

Query: 233 RPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQ 292
           RPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQ
Sbjct: 162 RPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQ 221

Query: 293 KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 222 KDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 260

[Close]
BLAST of CaUC01G008620 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 2.5e-95
Identity = 175/180 (97.22%), Postives = 179/180 (99.44%), Query Frame = 0 

Query: 143 RAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGK 202
           + A+MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGK
Sbjct: 2   KGATMFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGK 61

Query: 203 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 262
           GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD
Sbjct: 62  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 121

Query: 263 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 322
           MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 122 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 181

[Close]
BLAST of CaUC01G008620 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 4.3e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CaUC01G008620 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 357.8 bits (917), Expect = 9.6e-95
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CaUC01G008620 vs. NCBI nr
Match: XP_038906991.1 (DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 1.6e-94
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPRHFGRNLR+N+VSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CaUC01G008620 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.4e-95
Identity = 169/174 (97.13%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 321
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]
BLAST of CaUC01G008620 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.3e-91
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CaUC01G008620 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 9.4e-53
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 267 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 318
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]
BLAST of CaUC01G008620 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 9.4e-53
Identity = 95/172 (55.23%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 267 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 318
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]
BLAST of CaUC01G008620 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 9.4e-53
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 267 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 318
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]
BLAST of CaUC01G008620 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 2.1e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CaUC01G008620 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.0e-94
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CaUC01G008620 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.0e-94
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CaUC01G008620 vs. ExPASy TrEMBL
Match: A0A6J1FGH6 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.0e-94
Identity = 173/180 (96.11%), Postives = 178/180 (98.89%), Query Frame = 0 

Query: 143 RAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGK 202
           + A+MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGK
Sbjct: 69  QGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGK 128

Query: 203 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 262
           GLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDD
Sbjct: 129 GLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDD 188

Query: 263 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 322
           MEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 189 MEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 248

[Close]
BLAST of CaUC01G008620 vs. ExPASy TrEMBL
Match: A0A2I4HHD1 (DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC109017848 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.3e-94
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CaUC01G008620 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 337.8 bits (865), Expect = 9.5e-93
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 266
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 267 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 323
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CaUC01G008620 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 76.6 bits (187), Expect = 4.0e-14
Identity = 43/132 (32.58%), Postives = 75/132 (56.82%), Query Frame = 0 

Query: 189 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 248
           G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 249 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 308
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 309 TIKDDFLGVIND 319
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]
BLAST of CaUC01G008620 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-14
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 0 

Query: 189 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 248
           G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 249 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 308
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 309 TIKDDFLG 315
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]
BLAST of CaUC01G008620 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.2e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEA 234
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]
BLAST of CaUC01G008620 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.2e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 147 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 206
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 207 DGTGFVTFPVKYQCVVFRPFKGEILEA 234
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:
BLAST of CaUC01G008620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579070.17.1e-9885.39hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7032688.12.5e-9597.22hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_004150740.14.3e-95100.00DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011... [more]
XP_038906688.19.6e-9599.43DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ... [more]
XP_038906991.11.6e-9498.86DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida][more]
BLAST of CaUC01G008620 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462793.4e-9597.13DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1[more]
P384211.3e-9192.61DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB... [more]
Q5E9B89.4e-5354.65DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1... [more]
Q7ZW419.4e-5355.23DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=... [more]
P624879.4e-5354.65DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE... [more]
BLAST of CaUC01G008620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPS42.1e-95100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1[more]
A0A6J1JSG61.0e-9498.86DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1E6V31.0e-9498.86DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1FGH61.0e-9496.11DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=... [more]
A0A2I4HHD11.3e-9498.30DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC1090... [more]
BLAST of CaUC01G008620 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G59180.19.5e-9392.61DNA-directed RNA polymerase II [more]
AT4G14660.14.0e-1432.58RNA polymerase Rpb7-like, N-terminal domain [more]
AT3G22900.15.2e-1434.38RNA polymerase Rpb7-like, N-terminal domain [more]
AT1G06790.22.2e-0429.89RNA polymerase Rpb7 N-terminal domain-containing protein [more]
AT1G06790.12.2e-0429.89RNA polymerase Rpb7 N-terminal domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003029S1 domainPFAMPF00575S1coord: 224..302
e-value: 4.9E-16
score: 58.8
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 146..226
e-value: 9.1E-28
score: 98.4
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 147..224
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 154..210
e-value: 1.6E-12
score: 47.5
NoneNo IPR availableGENE3D2.40.50.140coord: 227..317
e-value: 2.7E-36
score: 125.5
NoneNo IPR availablePANTHERPTHR12709:SF8BNAA10G12180D PROTEINcoord: 136..322
NoneNo IPR availableCDDcd04329RNAP_II_Rpb7_Ncoord: 148..227
e-value: 2.70098E-40
score: 134.232
NoneNo IPR availableCDDcd04462S1_RNAPII_Rpb7coord: 227..314
e-value: 3.57322E-47
score: 152.03
IPR045113RNA polymerase Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 136..322
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 225..315

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G008620.1CaUC01G008620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process GO:0045948 positive regulation of translational initiation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000932 P-body
cellular_component GO:0005665 RNA polymerase II, core complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0031369 translation initiation factor binding
molecular_function GO:0003676 nucleic acid binding