CaUC01G007890 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G007890
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein of unknown function (DUF 3339)
Location	Ciama_Chr01: 8909585 .. 8911036 (+)
RNA-Seq Expression	CaUC01G007890
Synteny	CaUC01G007890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAATTTGGAAGCTTCACCATTAGCGGCAAGGTTATTATTATCCATACCATCCTCTTTTTCGGCGTCTTCACAATTCTCAATTTGTCTATCGATATTTATATCTTCACCGGTGACTTTTAAAAATGACTTCTAAATAATATGCTTTGTTGTTTGTCTATTTTCTTAAATTTACTTCCTATTGTTTGATATTGTTTCTAATTTACTCCCTCATTATTCGGAGATGTTAAATTTTTGGAGTATGACATTTAATTAGTAAAGCTATGAAAATTAAGAGAAGAAGAATGTCATCTAAAATAGAAAAGATTTTGAGTTTTGTTTTTTTAATTTGACCTTTCGTTATGTTTTTTACGTTGATTTTGTTCAATTTTTTAAGTTGATTCATTTAGGCTTTTTGAATAATATATTAATTATATGATATGTTTATATTTCGTATATCAGTAAAACTGATATATTCATATTCCATAAGAGTTATAACTAATTTTAGTATCATATCAATTAAACAACAATCAAATAGAAAATCACATAACAATTAGTATCAAATAATAATCAGATAGCAATCATTATCCAATAAGAATTAGTATCATTAAGAATCAACATCAAATAGTAATCAGAGAGCCATCAGTATCATTAGCAATCGATATCAAATAGTAATCGGATATCAATCAAATGACAATTGATGTTATTAGCAATTAGATAACAATCAATATCATATAGCAATCAGATAGCAAATCAATAATATTAGCAATCAGTATAAGATAGTAATCATATAACAATCAGTTTCAAATAGCAATTATTATTAGATAACATTGAGTATCATTAAGAATCAATATTAGAGAAGTAATCAGATAGCAATCAAATAACAATATGTATCATTAGCAATTAGTATCAGATAGCAATCATTTTCATTTAAACTTTTTTGATAAAAAAAAAAAGGTTTAAAATAAAAACACTCATGTGTTTTGTTACACTTTCTCAAAAGTGTTTTAATATACAAGTTTGTTTGGTTTGCTTCATACTATGTGTTTCCGTTAATGTCAAATTGCTATAAAGGACGTCTATTAAACACTATGAACTAATAATTTTAAAATATTTTTCACTAGTCGAGTGTTTTTTAAGCAGATGATTGATATAATAGTTTATTAGATTTTAGTCATTAGAAGTTGGTCGTTGGAGATAATCAATGTAGTAGGTCGATGGAGTTGGTTGCTAGAGTTAGCCTCGGAGGTGGTTATTGCTAAAGTTGGTTGCTGGAGGGAGTCGTTGGAGATGACCGCTAATGTTGATCATCGAAGGTGGTCAAAGAAGTTCATCCTCTTGGTTGCCAGAGGTGGCCATCAACAATGGTTTCCGTTGGAGTTGGTGGTTGCGGTGGTCACCAAAGTCATTAGTGGTGGTCATCGAAGTTGGTCGTATGTGGTGGTTGCTGGAGATGGTCATCAGAGGTAG

mRNA sequence

ATGGTTGAATTTGGAAGCTTCACCATTAGCGGCAAGGTTATTATTATCCATACCATCCTCTTTTTCGGCGTCTTCACAATTCTCAATTTGTCTATCGATATTTATATCTTCACCGGTCGATGGAGTTGGTTGCTAGAGTTAGCCTCGGAGGTGGTTATTGCTAAAGTTGGTTGCTGGAGGGAGTCGTTGGAGATGACCGCTAATGTTGATCATCGAAGGTGGTCAAAGAAGTTCATCCTCTTGGTTGCCAGAGGTGGCCATCAACAATGGTTTCCGTTGGAGTTGGTGGTTGCGGTGGTCACCAAAGTCATTAGTGGTGGTCATCGAAGTTGGTCGTATGTGGTGGTTGCTGGAGATGGTCATCAGAGGTAG

Coding sequence (CDS)

ATGGTTGAATTTGGAAGCTTCACCATTAGCGGCAAGGTTATTATTATCCATACCATCCTCTTTTTCGGCGTCTTCACAATTCTCAATTTGTCTATCGATATTTATATCTTCACCGGTCGATGGAGTTGGTTGCTAGAGTTAGCCTCGGAGGTGGTTATTGCTAAAGTTGGTTGCTGGAGGGAGTCGTTGGAGATGACCGCTAATGTTGATCATCGAAGGTGGTCAAAGAAGTTCATCCTCTTGGTTGCCAGAGGTGGCCATCAACAATGGTTTCCGTTGGAGTTGGTGGTTGCGGTGGTCACCAAAGTCATTAGTGGTGGTCATCGAAGTTGGTCGTATGTGGTGGTTGCTGGAGATGGTCATCAGAGGTAG

Protein sequence

MVEFGSFTISGKVIIIHTILFFGVFTILNLSIDIYIFTGRWSWLLELASEVVIAKVGCWRESLEMTANVDHRRWSKKFILLVARGGHQQWFPLELVVAVVTKVISGGHRSWSYVVVAGDGHQR

Homology

[Close]

BLAST of CaUC01G007890 vs. NCBI nr
Match: XP_008439857.1 (PREDICTED: uncharacterized protein LOC103484520 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MVEFGSFTISGKVIIIHTILFFGVFTILNLSIDIYIFTG 40
          MVEFGSFT +GK II+HTILFFGVFTIL L++DI+IFTG
Sbjct: 31 MVEFGSFTTNGKAIIVHTILFFGVFTILILAVDIHIFTG 69

[Close]

BLAST of CaUC01G007890 vs. ExPASy TrEMBL
Match: A0A1S3AZR7 (uncharacterized protein LOC103484520 OS=Cucumis melo OX=3656 GN=LOC103484520 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MVEFGSFTISGKVIIIHTILFFGVFTILNLSIDIYIFTG 40
          MVEFGSFT +GK II+HTILFFGVFTIL L++DI+IFTG
Sbjct: 31 MVEFGSFTTNGKAIIVHTILFFGVFTILILAVDIHIFTG 69

[Close]

BLAST of CaUC01G007890 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 19/39 (48.72%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 1  MVEFGSFTISGKVIIIHTILFFGVFTILNLSIDIYIFTG 40
          +VEFG+   SG  I++HTI+FFG+ TI  ++I ++I+TG
Sbjct: 31 VVEFGNMQTSGASILVHTIIFFGLITIFTIAIRLHIYTG 69

[Close]

BLAST of CaUC01G007890 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.0e-04
Identity = 17/38 (44.74%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 2   VEFGSFTISGKVIIIHTILFFGVFTILNLSIDIYIFTG 40
           V+FG    +GK I +HT++FF ++TIL L+++++I+TG
Sbjct: 105 VDFGGLKTNGKAIAVHTLIFFAIYTILILALNLHIYTG 142

The following BLAST results are available for this feature:

BLAST of CaUC01G007890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439857.1	4.1e-06	79.49	PREDICTED: uncharacterized protein LOC103484520 [Cucumis melo]	[more]

BLAST of CaUC01G007890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC01G007890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZR7	2.0e-06	79.49	uncharacterized protein LOC103484520 OS=Cucumis melo OX=3656 GN=LOC103484520 PE=...	[more]

BLAST of CaUC01G007890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48660.1	4.1e-04	48.72	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	7.0e-04	44.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..36 e-value: 2.8E-6 score: 27.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G007890.1	CaUC01G007890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane