CaUC01G007620 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G007620
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationCiama_Chr01: 8724911 .. 8725808 (+)
RNA-Seq ExpressionCaUC01G007620
SyntenyCaUC01G007620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAAATACTCCACATGAAACCTCCCTAGATATGAATGAACTCTATTCCTTCATCACTGCAATCACAAAGAGAAATCCTGGAATAAGCAGTTGTACCTGGGGAGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCTTCTTCACCAGTCAACAGCCCTCCTCAGCTTGGGAAGATCTTTCTTAGTCTAACTTTTCAGGCCATTTTAGCCTTGTTTTTCAGCTTATCTTCTTCATCTCCTCCATTTCCTACAGTTCTTTTTGGGGCTGTTATGTTGATTGGCTTTGCAGTTTCATTTGCTGGAGTTCTCCTTCAAAATGCATTCCCAAAAATTGCACTTCTGTTAGAAAAGTTAGGTGCTCTATTTGCTGCAATTGGTATCTGCATCATAGCAAGTCTTCTAGTCCATCCAAACCTTGCTTGGATATGTTGGTTGGCATGTGGCTTCTTCCTGCTAGCCTTTATTATATCATTCAAGTGAATTTGACAGAATGTGTATCCCAATTGTCCAAGTGTACAGAGGATGCACTTCTGTAGAATCCATGCCCATGTGTTTTGATCTCTTTTACCGTCTCTGATTCTTGACCTGGTGTGGTTCATCACCAAGACAACATCAGCTCCAATTTACCTGAAAAATCATGTTATTCTACAACTTAAAATGACATGATAACTCTGCCTGTGTCATGCATTAAGCATCATTTCTTCTACGCAGCCGGTCCCAAGCCCGGACAAAGGAGGAGGGTAGTGTCATCAGACCATTGGATCTTGAGCTTGTTCTAAAAGACAGAGGCTTAAAGTATAGGTGGCCATATTTTCATCAAAGTAGAGTAGTACTAAAGATGGCAGCATCAAGAAAGATGGGCTCTCTCATTGGTGCAGACTGA

mRNA sequence

ATGGCAGCAAATACTCCACATGAAACCTCCCTAGATATGAATGAACTCTATTCCTTCATCACTGCAATCACAAAGAGAAATCCTGGAATAAGCAGTTGTACCTGGGGAGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCTTCTTCACCAGTCAACAGCCCTCCTCAGCTTGGGAAGATCTTTCTTAGTCTAACTTTTCAGGCCATTTTAGCCTTGTTTTTCAGCTTATCTTCTTCATCTCCTCCATTTCCTACAGTTCTTTTTGGGGCTGTTATGTTGATTGGCTTTGCAGTTTCATTTGCTGGAGTTCTCCTTCAAAATGCATTCCCAAAAATTGCACTTCTGTTAGAAAAGTTAGGTGCTCTATTTGCTGCAATTGGTATCTGCATCATAGCAAGTCTTCTAGTCCATCCAAACCTTGCTTGGATATGTTGCCGGTCCCAAGCCCGGACAAAGGAGGAGGGTAGTGTCATCAGACCATTGGATCTTGAGCTTGTTCTAAAAGACAGAGGCTTAAAGTATAGGTGGCCATATTTTCATCAAAGTAGAGTAGTACTAAAGATGGCAGCATCAAGAAAGATGGGCTCTCTCATTGGTGCAGACTGA

Coding sequence (CDS)

ATGGCAGCAAATACTCCACATGAAACCTCCCTAGATATGAATGAACTCTATTCCTTCATCACTGCAATCACAAAGAGAAATCCTGGAATAAGCAGTTGTACCTGGGGAGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCTTCTTCACCAGTCAACAGCCCTCCTCAGCTTGGGAAGATCTTTCTTAGTCTAACTTTTCAGGCCATTTTAGCCTTGTTTTTCAGCTTATCTTCTTCATCTCCTCCATTTCCTACAGTTCTTTTTGGGGCTGTTATGTTGATTGGCTTTGCAGTTTCATTTGCTGGAGTTCTCCTTCAAAATGCATTCCCAAAAATTGCACTTCTGTTAGAAAAGTTAGGTGCTCTATTTGCTGCAATTGGTATCTGCATCATAGCAAGTCTTCTAGTCCATCCAAACCTTGCTTGGATATGTTGCCGGTCCCAAGCCCGGACAAAGGAGGAGGGTAGTGTCATCAGACCATTGGATCTTGAGCTTGTTCTAAAAGACAGAGGCTTAAAGTATAGGTGGCCATATTTTCATCAAAGTAGAGTAGTACTAAAGATGGCAGCATCAAGAAAGATGGGCTCTCTCATTGGTGCAGACTGA

Protein sequence

MAANTPHETSLDMNELYSFITAITKRNPGISSCTWGASDCLPIYIKMQRPSSSPVNSPPQLGKIFLSLTFQAILALFFSLSSSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIALLLEKLGALFAAIGICIIASLLVHPNLAWICCRSQARTKEEGSVIRPLDLELVLKDRGLKYRWPYFHQSRVVLKMAASRKMGSLIGAD
Homology
BLAST of CaUC01G007620 vs. NCBI nr
Match: KGN49806.1 (hypothetical protein Csa_004683 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 9.2e-43
Identity = 103/151 (68.21%), Postives = 113/151 (74.83%), Query Frame = 0

Query: 1   MAANTPHETSLDMNELYSFITAITKRNPGISSCTWG--ASDCLPIYIKMQRPSSSPVNSP 60
           MA   PHE SLDMN+L S I A+T RNPGISSCTWG  ASDCLPIYIKMQRP  SPVNS 
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRP--SPVNS- 60

Query: 61  PQLGKIFLSLTFQAILALFFSLS-SSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIA 120
           PQ G  FLSLTFQAI+ LF SL+ SSS P P+ LF AVML  F  S+ GV+LQ  FPK A
Sbjct: 61  PQFGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTA 120

Query: 121 LLLEKLGALFAAIGICIIASLLVHPNLAWIC 149
            LL+  GALFAAIG CII SLL++PN  WIC
Sbjct: 121 QLLQTFGALFAAIGTCIIGSLLLYPNFTWIC 148

BLAST of CaUC01G007620 vs. NCBI nr
Match: KAA0050244.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98162.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-42
Identity = 102/149 (68.46%), Postives = 110/149 (73.83%), Query Frame = 0

Query: 1   MAANTPHETSLDMNELYSFITAITKRNPGISSCTWG--ASDCLPIYIKMQRPSSSPVNSP 60
           MA   PHE SLDMNELYSFITA+T RNPGISSCTWG  ASDCLPIYIKMQRP  SPVNS 
Sbjct: 1   MAETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRP--SPVNS- 60

Query: 61  PQLGKIFLSLTFQAILALFFSLSSSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIAL 120
           PQ G  F+S  FQAIL LF +L  S PP  + L G VML  F  SF GVLLQ  FPKIA 
Sbjct: 61  PQFGNTFVSSNFQAILGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAH 120

Query: 121 LLEKLGALFAAIGICIIASLLVHPNLAWI 148
           LL+  GAL AAIG+CI+ S L+HPNL WI
Sbjct: 121 LLQMFGALLAAIGVCIMGSPLLHPNLTWI 145

BLAST of CaUC01G007620 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-32
Identity = 86/138 (62.32%), Postives = 99/138 (71.74%), Query Frame = 0

Query: 13  MNELYSFITAITKRNPGISSCTWGASDCLPIYIKMQRPSSSPVNSPP---QLGKIFLSLT 72
           MNELYSFITAI +RNP I+S        LPI I MQRP  SP NS      +GK  L LT
Sbjct: 1   MNELYSFITAINERNPEINS--------LPICITMQRP--SPANSSKTENNVGKTILGLT 60

Query: 73  FQAILALFFSLSSSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIALLLEKLGALFAA 132
           FQA+LALF +  +SSPP  T LF A +LI FAVSFAG+ LQN FP+IALL EK+GAL AA
Sbjct: 61  FQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAA 120

Query: 133 IGICIIASLLVHPNLAWI 148
           IG+CI+ASLL+H N AWI
Sbjct: 121 IGVCIVASLLIHQNFAWI 128

BLAST of CaUC01G007620 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-30
Identity = 79/125 (63.20%), Postives = 91/125 (72.80%), Query Frame = 0

Query: 3   ANTPHETSLDMNELYSFITAITKRNPGISSCTWGA-----SDCLPIYIKMQRPSSSPVNS 62
           A+TP +TS+DMN L SFITAI +RN GISS TWG      SDCLPI I+MQRP   P  S
Sbjct: 2   ASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRP--PPAKS 61

Query: 63  PPQLGKIFLSLTFQAILALFFSLSSSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIA 122
              LGK  L LTFQA+LALF SL SS P  PT+LFGA +LI FAVSFAG+ LQ A+P++A
Sbjct: 62  SQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMA 121

BLAST of CaUC01G007620 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 6.8e-30
Identity = 79/149 (53.02%), Postives = 105/149 (70.47%), Query Frame = 0

Query: 3   ANTPHETSLDMNELYSFITAITKRNPGISSCTWGASDCLPIYIKMQRPSSSPVNSPPQLG 62
           A+T H+TSLDM+   SFI  I++RN G+  C    S+CLP++I+MQ+   +  +S  +LG
Sbjct: 2   ASTSHQTSLDMSAFSSFIRTISQRNYGLGCCC-TPSNCLPVFIRMQQSPQATADSSQKLG 61

Query: 63  KIFLSLTFQAILALFFSLSSSSPPFPTVL--FGAVMLIGFAVSFAGVLLQNAFPKIALLL 122
           KI LSL+FQA+LALF S   +SPP P ++  F A + I FAVSFA + L N+FP+ A L 
Sbjct: 62  KIILSLSFQAVLALFISSPPTSPP-PLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 121

Query: 123 EKLGALFAAIGICIIAS-LLVHPNLAWIC 149
           EK+GALF+A G+C IAS LLVH N AWIC
Sbjct: 122 EKVGALFSAFGVCFIASFLLVHQNFAWIC 148

BLAST of CaUC01G007620 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-43
Identity = 103/151 (68.21%), Postives = 113/151 (74.83%), Query Frame = 0

Query: 1   MAANTPHETSLDMNELYSFITAITKRNPGISSCTWG--ASDCLPIYIKMQRPSSSPVNSP 60
           MA   PHE SLDMN+L S I A+T RNPGISSCTWG  ASDCLPIYIKMQRP  SPVNS 
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRP--SPVNS- 60

Query: 61  PQLGKIFLSLTFQAILALFFSLS-SSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIA 120
           PQ G  FLSLTFQAI+ LF SL+ SSS P P+ LF AVML  F  S+ GV+LQ  FPK A
Sbjct: 61  PQFGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTA 120

Query: 121 LLLEKLGALFAAIGICIIASLLVHPNLAWIC 149
            LL+  GALFAAIG CII SLL++PN  WIC
Sbjct: 121 QLLQTFGALFAAIGTCIIGSLLLYPNFTWIC 148

BLAST of CaUC01G007620 vs. ExPASy TrEMBL
Match: A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 5.8e-43
Identity = 102/149 (68.46%), Postives = 110/149 (73.83%), Query Frame = 0

Query: 1   MAANTPHETSLDMNELYSFITAITKRNPGISSCTWG--ASDCLPIYIKMQRPSSSPVNSP 60
           MA   PHE SLDMNELYSFITA+T RNPGISSCTWG  ASDCLPIYIKMQRP  SPVNS 
Sbjct: 1   MAETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRP--SPVNS- 60

Query: 61  PQLGKIFLSLTFQAILALFFSLSSSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIAL 120
           PQ G  F+S  FQAIL LF +L  S PP  + L G VML  F  SF GVLLQ  FPKIA 
Sbjct: 61  PQFGNTFVSSNFQAILGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAH 120

Query: 121 LLEKLGALFAAIGICIIASLLVHPNLAWI 148
           LL+  GAL AAIG+CI+ S L+HPNL WI
Sbjct: 121 LLQMFGALLAAIGVCIMGSPLLHPNLTWI 145

BLAST of CaUC01G007620 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.3e-33
Identity = 86/138 (62.32%), Postives = 99/138 (71.74%), Query Frame = 0

Query: 13  MNELYSFITAITKRNPGISSCTWGASDCLPIYIKMQRPSSSPVNSPP---QLGKIFLSLT 72
           MNELYSFITAI +RNP I+S        LPI I MQRP  SP NS      +GK  L LT
Sbjct: 1   MNELYSFITAINERNPEINS--------LPICITMQRP--SPANSSKTENNVGKTILGLT 60

Query: 73  FQAILALFFSLSSSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIALLLEKLGALFAA 132
           FQA+LALF +  +SSPP  T LF A +LI FAVSFAG+ LQN FP+IALL EK+GAL AA
Sbjct: 61  FQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAA 120

Query: 133 IGICIIASLLVHPNLAWI 148
           IG+CI+ASLL+H N AWI
Sbjct: 121 IGVCIVASLLIHQNFAWI 128

BLAST of CaUC01G007620 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.7e-31
Identity = 79/125 (63.20%), Postives = 91/125 (72.80%), Query Frame = 0

Query: 3   ANTPHETSLDMNELYSFITAITKRNPGISSCTWGA-----SDCLPIYIKMQRPSSSPVNS 62
           A+TP +TS+DMN L SFITAI +RN GISS TWG      SDCLPI I+MQRP   P  S
Sbjct: 2   ASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRP--PPAKS 61

Query: 63  PPQLGKIFLSLTFQAILALFFSLSSSSPPFPTVLFGAVMLIGFAVSFAGVLLQNAFPKIA 122
              LGK  L LTFQA+LALF SL SS P  PT+LFGA +LI FAVSFAG+ LQ A+P++A
Sbjct: 62  SQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMA 121

BLAST of CaUC01G007620 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 79/149 (53.02%), Postives = 105/149 (70.47%), Query Frame = 0

Query: 3   ANTPHETSLDMNELYSFITAITKRNPGISSCTWGASDCLPIYIKMQRPSSSPVNSPPQLG 62
           A+T H+TSLDM+   SFI  I++RN G+  C    S+CLP++I+MQ+   +  +S  +LG
Sbjct: 2   ASTSHQTSLDMSAFSSFIRTISQRNYGLGCCC-TPSNCLPVFIRMQQSPQATADSSQKLG 61

Query: 63  KIFLSLTFQAILALFFSLSSSSPPFPTVL--FGAVMLIGFAVSFAGVLLQNAFPKIALLL 122
           KI LSL+FQA+LALF S   +SPP P ++  F A + I FAVSFA + L N+FP+ A L 
Sbjct: 62  KIILSLSFQAVLALFISSPPTSPP-PLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 121

Query: 123 EKLGALFAAIGICIIAS-LLVHPNLAWIC 149
           EK+GALF+A G+C IAS LLVH N AWIC
Sbjct: 122 EKVGALFSAFGVCFIASFLLVHQNFAWIC 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49806.19.2e-4368.21hypothetical protein Csa_004683 [Cucumis sativus][more]
KAA0050244.11.2e-4268.46putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KAA0050246.11.9e-3262.32putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
XP_022146444.11.8e-3063.20uncharacterized protein LOC111015658 [Momordica charantia][more]
KGN49808.16.8e-3053.02hypothetical protein Csa_004650 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQ034.5e-4368.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
A0A5D3BEH85.8e-4368.46Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7U7U19.3e-3362.32Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1CY588.7e-3163.20uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KJP23.3e-3053.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G007620.1CaUC01G007620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane