Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATAGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCCCGTTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA
mRNA sequence
ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATAGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCCCGTTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA
Coding sequence (CDS)
ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATAGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCCCGTTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA
Protein sequence
MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK
Homology
BLAST of CaUC01G007610 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 218.4 bits (555), Expect = 4.6e-53
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0
Query: 1 MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
MASTSHQTSLDM+A SSF TI+QRNY + TPS+CLP+ I M QSPQAT SS Q
Sbjct: 1 MASTSHQTSLDMSAF-SSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QK 60
Query: 61 LGKTILGLTFQAILALFISS-PTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARL 120
LGK IL L+FQA+LALFISS PTS PP L H F AAV ISFAVSFAALFL NSFPR A L
Sbjct: 61 LGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHL 120
Query: 121 FEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
FEK+GALF+A GVC IASFLLVHQNFAWICW+AC FS IVF LSFK
Sbjct: 121 FEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of CaUC01G007610 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 179.5 bits (454), Expect = 2.4e-41
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 0
Query: 1 MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
M S+S Q S+DMN L S + +IN+RN I + LPICI M + A S + N
Sbjct: 1 MESSSQQISIDMNHLYSLIT-SINERNPEI-------NGLPICIIMQTASPANSSKTENN 60
Query: 61 LGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLF 120
+G TILGLTFQA+LALFI+S TSSPP LTHLFGAAVLISFAVSF +FLQ+ FPRIA LF
Sbjct: 61 VGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120
Query: 121 EKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
EKIGAL AAIGVCI+AS LL+HQNFAWI WLAC FS + F LSF+
Sbjct: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of CaUC01G007610 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 177.6 bits (449), Expect = 9.1e-41
Identity = 100/148 (67.57%), Postives = 112/148 (75.68%), Query Frame = 0
Query: 18 SFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALF 77
SF IN+RN I + LPICITM + A S + N+GKTILGLTFQA+LALF
Sbjct: 6 SFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALF 65
Query: 78 ISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIAS 137
I+SP SSPP LTHLF AAVLISFAVSFA +FLQN FPRIA LFEKIGAL AAIGVCI+AS
Sbjct: 66 ITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS 125
Query: 138 FLLVHQNFAWICWLACAFSFIVFGLSFK 166
LL+HQNFAWI WLA FS + F LSF+
Sbjct: 126 -LLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of CaUC01G007610 vs. NCBI nr
Match:
KAG6579132.1 (hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 0
Query: 33 FSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLF 92
FSTP DCLP I + + P N+GK I+GLT QA+LA+FISSP+SSPP L LF
Sbjct: 3 FSTPRDCLP--IWRAREQRLEPDKGHSNVGKAIIGLTSQALLAMFISSPSSSPPLLRVLF 62
Query: 93 GAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLA 152
GA + ISF +SFA +FL+N+FP+ ARLFEK+GALFAAIGV IIASFLL+H+N+AWI LA
Sbjct: 63 GATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWISGLA 122
Query: 153 CAFSFIVFGLSF 165
C FS IVFGLS+
Sbjct: 123 CVFSLIVFGLSY 132
BLAST of CaUC01G007610 vs. NCBI nr
Match:
XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])
HSP 1 Score: 141.0 bits (354), Expect = 9.4e-30
Identity = 86/128 (67.19%), Postives = 96/128 (75.00%), Query Frame = 0
Query: 1 MASTSHQTSLDMNALSSSFSPTINQRNYRISIF------STPSDCLPICITMLQSPQATP 60
MAST QTS+DMNAL SSF IN+RN IS F STPSDCLPICI M + P P
Sbjct: 1 MASTPQQTSVDMNAL-SSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP---P 60
Query: 61 SSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFP 120
+ S Q+LGKTILGLTFQA+LALFIS P+S P T LFGAAVLISFAVSFA LFLQ ++P
Sbjct: 61 AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120
Query: 121 RIARLFEK 123
R+A LFEK
Sbjct: 121 RMALLFEK 124
BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0
Query: 1 MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
MASTSHQTSLDM+A SSF TI+QRNY + TPS+CLP+ I M QSPQAT SS Q
Sbjct: 1 MASTSHQTSLDMSAF-SSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QK 60
Query: 61 LGKTILGLTFQAILALFISS-PTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARL 120
LGK IL L+FQA+LALFISS PTS PP L H F AAV ISFAVSFAALFL NSFPR A L
Sbjct: 61 LGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHL 120
Query: 121 FEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
FEK+GALF+A GVC IASFLLVHQNFAWICW+AC FS IVF LSFK
Sbjct: 121 FEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 0
Query: 1 MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
M S+S Q S+DMN L S + +IN+RN I + LPICI M + A S + N
Sbjct: 1 MESSSQQISIDMNHLYSLIT-SINERNPEI-------NGLPICIIMQTASPANSSKTENN 60
Query: 61 LGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLF 120
+G TILGLTFQA+LALFI+S TSSPP LTHLFGAAVLISFAVSF +FLQ+ FPRIA LF
Sbjct: 61 VGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120
Query: 121 EKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
EKIGAL AAIGVCI+AS LL+HQNFAWI WLAC FS + F LSF+
Sbjct: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 4.4e-41
Identity = 100/148 (67.57%), Postives = 112/148 (75.68%), Query Frame = 0
Query: 18 SFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALF 77
SF IN+RN I + LPICITM + A S + N+GKTILGLTFQA+LALF
Sbjct: 6 SFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALF 65
Query: 78 ISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIAS 137
I+SP SSPP LTHLF AAVLISFAVSFA +FLQN FPRIA LFEKIGAL AAIGVCI+AS
Sbjct: 66 ITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS 125
Query: 138 FLLVHQNFAWICWLACAFSFIVFGLSFK 166
LL+HQNFAWI WLA FS + F LSF+
Sbjct: 126 -LLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match:
A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 4.6e-30
Identity = 86/128 (67.19%), Postives = 96/128 (75.00%), Query Frame = 0
Query: 1 MASTSHQTSLDMNALSSSFSPTINQRNYRISIF------STPSDCLPICITMLQSPQATP 60
MAST QTS+DMNAL SSF IN+RN IS F STPSDCLPICI M + P P
Sbjct: 1 MASTPQQTSVDMNAL-SSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP---P 60
Query: 61 SSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFP 120
+ S Q+LGKTILGLTFQA+LALFIS P+S P T LFGAAVLISFAVSFA LFLQ ++P
Sbjct: 61 AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120
Query: 121 RIARLFEK 123
R+A LFEK
Sbjct: 121 RMALLFEK 124
BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match:
A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 85/170 (50.00%), Postives = 104/170 (61.18%), Query Frame = 0
Query: 1 MAST-SHQTSLDMNALSSSFSPTINQRNYRISIFS---TPSDCLPICITMLQSPQATPSS 60
MA T H+ SLDMN L+S N RN IS + SDCLPI I M Q P +P +
Sbjct: 1 MAETPPHEISLDMNKLNSLIFAVTN-RNPGISSCTWGGAASDCLPIYIKM-QRP--SPVN 60
Query: 61 SPQNLGKTILGLTFQAILALFIS-SPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPR 120
SPQ G T L LTFQAI+ LF+S +P+SS P + LF A +L SF S+ + LQ FP+
Sbjct: 61 SPQ-FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120
Query: 121 IARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
A+L + GALFAAIG CII S LL++ NF WICWLA F +SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISFK 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN49808.1 | 4.6e-53 | 74.10 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
KGN49803.1 | 2.4e-41 | 64.24 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
KAA0050246.1 | 9.1e-41 | 67.57 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
KAG6579132.1 | 1.3e-34 | 63.64 | hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022146444.1 | 9.4e-30 | 67.19 | uncharacterized protein LOC111015658 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KJP2 | 2.2e-53 | 74.10 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
A0A0A0KJN8 | 1.2e-41 | 64.24 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
A0A5A7U7U1 | 4.4e-41 | 67.57 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A6J1CY58 | 4.6e-30 | 67.19 | uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
A0A0A0KQ03 | 2.0e-22 | 50.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |