CaUC01G007610 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G007610
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationCiama_Chr01: 8718896 .. 8719393 (+)
RNA-Seq ExpressionCaUC01G007610
SyntenyCaUC01G007610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATAGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCCCGTTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA

mRNA sequence

ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATAGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCCCGTTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA

Coding sequence (CDS)

ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATAGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCCCGTTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA

Protein sequence

MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK
Homology
BLAST of CaUC01G007610 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 4.6e-53
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0

Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           MASTSHQTSLDM+A  SSF  TI+QRNY +    TPS+CLP+ I M QSPQAT  SS Q 
Sbjct: 1   MASTSHQTSLDMSAF-SSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QK 60

Query: 61  LGKTILGLTFQAILALFISS-PTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARL 120
           LGK IL L+FQA+LALFISS PTS PP L H F AAV ISFAVSFAALFL NSFPR A L
Sbjct: 61  LGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHL 120

Query: 121 FEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           FEK+GALF+A GVC IASFLLVHQNFAWICW+AC FS IVF LSFK
Sbjct: 121 FEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of CaUC01G007610 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-41
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 0

Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           M S+S Q S+DMN L S  + +IN+RN  I       + LPICI M  +  A  S +  N
Sbjct: 1   MESSSQQISIDMNHLYSLIT-SINERNPEI-------NGLPICIIMQTASPANSSKTENN 60

Query: 61  LGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLF 120
           +G TILGLTFQA+LALFI+S TSSPP LTHLFGAAVLISFAVSF  +FLQ+ FPRIA LF
Sbjct: 61  VGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120

Query: 121 EKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           EKIGAL AAIGVCI+AS LL+HQNFAWI WLAC FS + F LSF+
Sbjct: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of CaUC01G007610 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 9.1e-41
Identity = 100/148 (67.57%), Postives = 112/148 (75.68%), Query Frame = 0

Query: 18  SFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALF 77
           SF   IN+RN  I       + LPICITM +   A  S +  N+GKTILGLTFQA+LALF
Sbjct: 6   SFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALF 65

Query: 78  ISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIAS 137
           I+SP SSPP LTHLF AAVLISFAVSFA +FLQN FPRIA LFEKIGAL AAIGVCI+AS
Sbjct: 66  ITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS 125

Query: 138 FLLVHQNFAWICWLACAFSFIVFGLSFK 166
            LL+HQNFAWI WLA  FS + F LSF+
Sbjct: 126 -LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of CaUC01G007610 vs. NCBI nr
Match: KAG6579132.1 (hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 33  FSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLF 92
           FSTP DCLP  I   +  +  P     N+GK I+GLT QA+LA+FISSP+SSPP L  LF
Sbjct: 3   FSTPRDCLP--IWRAREQRLEPDKGHSNVGKAIIGLTSQALLAMFISSPSSSPPLLRVLF 62

Query: 93  GAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLA 152
           GA + ISF +SFA +FL+N+FP+ ARLFEK+GALFAAIGV IIASFLL+H+N+AWI  LA
Sbjct: 63  GATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWISGLA 122

Query: 153 CAFSFIVFGLSF 165
           C FS IVFGLS+
Sbjct: 123 CVFSLIVFGLSY 132

BLAST of CaUC01G007610 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 9.4e-30
Identity = 86/128 (67.19%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYRISIF------STPSDCLPICITMLQSPQATP 60
           MAST  QTS+DMNAL SSF   IN+RN  IS F      STPSDCLPICI M + P   P
Sbjct: 1   MASTPQQTSVDMNAL-SSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP---P 60

Query: 61  SSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFP 120
           + S Q+LGKTILGLTFQA+LALFIS P+S P   T LFGAAVLISFAVSFA LFLQ ++P
Sbjct: 61  AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120

Query: 121 RIARLFEK 123
           R+A LFEK
Sbjct: 121 RMALLFEK 124

BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0

Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           MASTSHQTSLDM+A  SSF  TI+QRNY +    TPS+CLP+ I M QSPQAT  SS Q 
Sbjct: 1   MASTSHQTSLDMSAF-SSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QK 60

Query: 61  LGKTILGLTFQAILALFISS-PTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARL 120
           LGK IL L+FQA+LALFISS PTS PP L H F AAV ISFAVSFAALFL NSFPR A L
Sbjct: 61  LGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHL 120

Query: 121 FEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           FEK+GALF+A GVC IASFLLVHQNFAWICW+AC FS IVF LSFK
Sbjct: 121 FEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 0

Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           M S+S Q S+DMN L S  + +IN+RN  I       + LPICI M  +  A  S +  N
Sbjct: 1   MESSSQQISIDMNHLYSLIT-SINERNPEI-------NGLPICIIMQTASPANSSKTENN 60

Query: 61  LGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLF 120
           +G TILGLTFQA+LALFI+S TSSPP LTHLFGAAVLISFAVSF  +FLQ+ FPRIA LF
Sbjct: 61  VGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120

Query: 121 EKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           EKIGAL AAIGVCI+AS LL+HQNFAWI WLAC FS + F LSF+
Sbjct: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.4e-41
Identity = 100/148 (67.57%), Postives = 112/148 (75.68%), Query Frame = 0

Query: 18  SFSPTINQRNYRISIFSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALF 77
           SF   IN+RN  I       + LPICITM +   A  S +  N+GKTILGLTFQA+LALF
Sbjct: 6   SFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALF 65

Query: 78  ISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIARLFEKIGALFAAIGVCIIAS 137
           I+SP SSPP LTHLF AAVLISFAVSFA +FLQN FPRIA LFEKIGAL AAIGVCI+AS
Sbjct: 66  ITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS 125

Query: 138 FLLVHQNFAWICWLACAFSFIVFGLSFK 166
            LL+HQNFAWI WLA  FS + F LSF+
Sbjct: 126 -LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.6e-30
Identity = 86/128 (67.19%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYRISIF------STPSDCLPICITMLQSPQATP 60
           MAST  QTS+DMNAL SSF   IN+RN  IS F      STPSDCLPICI M + P   P
Sbjct: 1   MASTPQQTSVDMNAL-SSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP---P 60

Query: 61  SSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFP 120
           + S Q+LGKTILGLTFQA+LALFIS P+S P   T LFGAAVLISFAVSFA LFLQ ++P
Sbjct: 61  AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120

Query: 121 RIARLFEK 123
           R+A LFEK
Sbjct: 121 RMALLFEK 124

BLAST of CaUC01G007610 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 85/170 (50.00%), Postives = 104/170 (61.18%), Query Frame = 0

Query: 1   MAST-SHQTSLDMNALSSSFSPTINQRNYRISIFS---TPSDCLPICITMLQSPQATPSS 60
           MA T  H+ SLDMN L+S      N RN  IS  +     SDCLPI I M Q P  +P +
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTN-RNPGISSCTWGGAASDCLPIYIKM-QRP--SPVN 60

Query: 61  SPQNLGKTILGLTFQAILALFIS-SPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPR 120
           SPQ  G T L LTFQAI+ LF+S +P+SS P  + LF A +L SF  S+  + LQ  FP+
Sbjct: 61  SPQ-FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 121 IARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
            A+L +  GALFAAIG CII S LL++ NF WICWLA       F +SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISFK 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49808.14.6e-5374.10hypothetical protein Csa_004650 [Cucumis sativus][more]
KGN49803.12.4e-4164.24hypothetical protein Csa_004681 [Cucumis sativus][more]
KAA0050246.19.1e-4167.57putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KAG6579132.11.3e-3463.64hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022146444.19.4e-3067.19uncharacterized protein LOC111015658 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJP22.2e-5374.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KJN81.2e-4164.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A5A7U7U14.4e-4167.57Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1CY584.6e-3067.19uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KQ032.0e-2250.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G007610.1CaUC01G007610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane