CaUC01G007500 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGCTTTTCTTGTCTTCTTGTTTGTGGCGAGGCTATGAAACAGGCGGATATGGCAGATTCTACACTTGGTATTAACATTTTTATATCTCGAGTTCGTTATGTTATGTTAACTAAAATAATGAGCATATAGTTCAACCGACATAAAACTTGTACTAATATTATTGTTGAGTTAATTTTGCCGTTGTAAGATCTAGAAGAGATGAAAAACCAATTCATTATACTTTACAAATCAATTCCCTTTCGTTGCCGAAGGCTGCACTTGCTAGTTCTGATCGCGACAGATATGAATCCCAACCTGCACTTGCTAGTTTGCAAGACAAGTATTTGGCAGTCCAAGTTAACCTTAAACCTAAAGCATGTGTTATATTTTTACCTCTAAACTTGTCACCTTGTATTAATTGAGAAAATTTCCTAACACTACCGTACTTAATTGGTTGTCACATTAGTATTCTTTTGAAAATTAGGAGGGGTTTACTATCGTTAAAAGAATATTTATGAAGACAAAATTGTGAATAAAGGGAGTATATCTTATTCTTGTAGTAGTAGAAATTTTTCCTTATCAATTTTCGTTTTAAACTTTCAATATCTTCCCATTAAACCCTAGAATTAGTTGGATGTGGTAGTTTTCTATCATCTATTCAATGTCCCCTCTAAATTTAATAACTAATTTTAACAAAAAGCAATATAGAAATCTCTATGAACTCACAATTTTAAATAATATCATATTATTGCCTAAATTTAAATTTAGTTAATACACAAATTAATCATTGAAAAAATTGCGAAAACTCACATTAATGGTTATTTAATATTTAGCTCTAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAAAAAAGAATTTATTGTCAATTTTATATGATACATATGTTTTATAGTTCATTGAAATTAGTATATGGAAATGCATATTTACGTTTAGGTGGTAAGAAATGATCCCCTTTTTGAATATATATATATATATATATTTTTATTTAATGTTATTATGTCCTAATGATTTCAGATGGCAAAACGAGGCGTTTTCATGCAATGAAGACACAATGGGGATTTGAAAAGTTGGTTTCACTTGGCACTTTCAACGATGCTTCTAATGGATTTTTGGTTGGGGATTATTGTGCATTTGGAGTCGACATTTTTATTATGAAATTTGATGGGAAGAGGGAGATTCATTCCTTGATCAAGCAGCCAAATAATTACAAATTTACTTGGAAATTCAATGATTTCTCACAACAAAATGAAACTTGTTACAAATCCGAAGCCTTTACATGCAGTGGAGAAGTAACCGTTGGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAATTTGCAATTATTATTTTCATAAAGTTATATTATATGTGGCTTTTACTTGCAATATTTTATGTTTCAGGATGATATCCTTGTATCCTAAAGGATCCTCCAAAGCAACCGCTGGTTATCTGTCACTGTACTTGTTGTTTGATAGTTTCAAAGAACTTCCTCAAGGTTCTCAAGTTTACATTGAATATGAGATGGCCATATTGAGTCAAGCTAATTGGGTAAAACCAAACAAAAAAGAAAGATCATGTAAGTACCTACTTTTAAACATATAATTTGCGAAGGAAGTTCTAATTTTTAAAACGTCTCATTTGATAACAATTTTTTTTTTTTTTTTTTTTAATTTTAAATTTATGCTATAATTTCATCTCAACTTTTGAATTATAGTTTGCATCTTTGTTAAAGAAAAAACGTATCCTAAAAACAAAAAAAAGTTTTTGAATTTTTTTCCCCCAAAACTTGATTTGGTTGCTTTGCTTTTGAAAATATAAGAATGAAATTTGTGTTTATAAGCTTAATTTTCAAAAACCACAAACCAAAAGTGTAAACGTTTATCCCTATGAACTCAAATGAGGAGGAGTTGCTAGAGTTGGTTGTTGGATTATTGCTTGGTGGTTTAACATGATATTAGAGCAAGATGTCATGCGTTTGAATACTTTTGTAAAGTCATTTCTTCCCCTAATTAACATTGAATATTTCACATGTTCCCAACTTTAAGATTTTGGGTTGATTGGTGTTTTAACGTTTGGGTTTCTTTTTTTTGTGCCGATAAACGTTGGTTTGAGTTTGGCGGTGTAGAAACGGGTTGCAGATTTCATATTGTTGAGCGATCTCAAGGAACCGAAGAAGGGGTTTATTCACGATAATAGCATTATTGTTGAAGTGAGTATGAATGTTGTCTCTACCTTGAAAAAGTTTTTGTAGAAGGGAAAATATAGATGAGTTGCCGTTTTGGGGATCATAATGGAGTATTAGATGCAAAATTTTGAAGGATTATTTATTTTTTCTATTCTAATGTCTTAGGATGCACAGCCTTTTGAAGATGGTTTAAAATTTTGTATATCTGAACAAATGTGTTATGTTTTTGCTCTTGCAAAAGCCAAGAGATTCATCAATTTATGA ATGCAGCTTTTCTTGTCTTCTTGTTTGTGGCGAGGCTATGAAACAGGCGGATATGGCAGATTCTACACTTGGATGATATCCTTGTATCCTAAAGGATCCTCCAAAGCAACCGCTGGTTATCTGTCACTGTACTTGTTGTTTGATAGTTTCAAAGAACTTCCTCAAGGTTCTCAAGTTTACATTGAATATGAGATGGCCATATTGAGTCAAGCTAATTGGGTAAAACCAAACAAAAAAGAAAGATCATATTTCATATTGTTGAGCGATCTCAAGGAACCGAAGAAGGGGTTTATTCACGATAATAGCATTATTGTTGAAGATGCACAGCCTTTTGAAGATGGTTTAAAATTTTGTATATCTGAACAAATGTGTTATGTTTTTGCTCTTGCAAAAGCCAAGAGATTCATCAATTTATGA ATGCAGCTTTTCTTGTCTTCTTGTTTGTGGCGAGGCTATGAAACAGGCGGATATGGCAGATTCTACACTTGGATGATATCCTTGTATCCTAAAGGATCCTCCAAAGCAACCGCTGGTTATCTGTCACTGTACTTGTTGTTTGATAGTTTCAAAGAACTTCCTCAAGGTTCTCAAGTTTACATTGAATATGAGATGGCCATATTGAGTCAAGCTAATTGGGTAAAACCAAACAAAAAAGAAAGATCATATTTCATATTGTTGAGCGATCTCAAGGAACCGAAGAAGGGGTTTATTCACGATAATAGCATTATTGTTGAAGATGCACAGCCTTTTGAAGATGGTTTAAAATTTTGTATATCTGAACAAATGTGTTATGTTTTTGCTCTTGCAAAAGCCAAGAGATTCATCAATTTATGA MQLFLSSCLWRGYETGGYGRFYTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQANWVKPNKKERSYFILLSDLKEPKKGFIHDNSIIVEDAQPFEDGLKFCISEQMCYVFALAKAKRFINL Homology
BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_038874970.1 (uncharacterized protein LOC120067490 [Benincasa hispida]) HSP 1 Score: 91.7 bits (226), Expect = 5.5e-15 Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 0
BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_022146379.1 (ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia]) HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14 Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 0
BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_038875772.1 (uncharacterized protein LOC120068142 [Benincasa hispida]) HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14 Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 0
BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_022146380.1 (probable inactive serine/threonine-protein kinase fnkC [Momordica charantia]) HSP 1 Score: 88.6 bits (218), Expect = 4.6e-14 Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_022146377.1 (uncharacterized protein LOC111015606 [Momordica charantia]) HSP 1 Score: 82.0 bits (201), Expect = 4.3e-12 Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0
BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CXZ0 (ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=LOC111015607 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 5.9e-15 Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 0
BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CX47 (probable inactive serine/threonine-protein kinase fnkC OS=Momordica charantia OX=3673 GN=LOC111015608 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 2.2e-14 Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CZF3 (uncharacterized protein LOC111015606 OS=Momordica charantia OX=3673 GN=LOC111015606 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12 Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0
BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CYF6 (uncharacterized protein LOC111015611 OS=Momordica charantia OX=3673 GN=LOC111015611 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0
BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CZF7 (uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015610 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 7.5e-10 Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of CaUC01G007500 vs. TAIR 10
Match: AT2G25320.1 (TRAF-like family protein ) HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04 Identity = 30/115 (26.09%), Postives = 57/115 (49.57%), Query Frame = 0
BLAST of CaUC01G007500 vs. TAIR 10
Match: AT1G31390.1 (TRAF-like family protein ) HSP 1 Score: 41.6 bits (96), Expect = 6.0e-04 Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|