CaUC01G007500 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G007500
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMATH domain and coiled-coil domain-containing protein
LocationCiama_Chr01: 8584737 .. 8587236 (+)
RNA-Seq ExpressionCaUC01G007500
SyntenyCaUC01G007500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCTTTTCTTGTCTTCTTGTTTGTGGCGAGGCTATGAAACAGGCGGATATGGCAGATTCTACACTTGGTATTAACATTTTTATATCTCGAGTTCGTTATGTTATGTTAACTAAAATAATGAGCATATAGTTCAACCGACATAAAACTTGTACTAATATTATTGTTGAGTTAATTTTGCCGTTGTAAGATCTAGAAGAGATGAAAAACCAATTCATTATACTTTACAAATCAATTCCCTTTCGTTGCCGAAGGCTGCACTTGCTAGTTCTGATCGCGACAGATATGAATCCCAACCTGCACTTGCTAGTTTGCAAGACAAGTATTTGGCAGTCCAAGTTAACCTTAAACCTAAAGCATGTGTTATATTTTTACCTCTAAACTTGTCACCTTGTATTAATTGAGAAAATTTCCTAACACTACCGTACTTAATTGGTTGTCACATTAGTATTCTTTTGAAAATTAGGAGGGGTTTACTATCGTTAAAAGAATATTTATGAAGACAAAATTGTGAATAAAGGGAGTATATCTTATTCTTGTAGTAGTAGAAATTTTTCCTTATCAATTTTCGTTTTAAACTTTCAATATCTTCCCATTAAACCCTAGAATTAGTTGGATGTGGTAGTTTTCTATCATCTATTCAATGTCCCCTCTAAATTTAATAACTAATTTTAACAAAAAGCAATATAGAAATCTCTATGAACTCACAATTTTAAATAATATCATATTATTGCCTAAATTTAAATTTAGTTAATACACAAATTAATCATTGAAAAAATTGCGAAAACTCACATTAATGGTTATTTAATATTTAGCTCTAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAAAAAAGAATTTATTGTCAATTTTATATGATACATATGTTTTATAGTTCATTGAAATTAGTATATGGAAATGCATATTTACGTTTAGGTGGTAAGAAATGATCCCCTTTTTGAATATATATATATATATATATTTTTATTTAATGTTATTATGTCCTAATGATTTCAGATGGCAAAACGAGGCGTTTTCATGCAATGAAGACACAATGGGGATTTGAAAAGTTGGTTTCACTTGGCACTTTCAACGATGCTTCTAATGGATTTTTGGTTGGGGATTATTGTGCATTTGGAGTCGACATTTTTATTATGAAATTTGATGGGAAGAGGGAGATTCATTCCTTGATCAAGCAGCCAAATAATTACAAATTTACTTGGAAATTCAATGATTTCTCACAACAAAATGAAACTTGTTACAAATCCGAAGCCTTTACATGCAGTGGAGAAGTAACCGTTGGTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAATTTGCAATTATTATTTTCATAAAGTTATATTATATGTGGCTTTTACTTGCAATATTTTATGTTTCAGGATGATATCCTTGTATCCTAAAGGATCCTCCAAAGCAACCGCTGGTTATCTGTCACTGTACTTGTTGTTTGATAGTTTCAAAGAACTTCCTCAAGGTTCTCAAGTTTACATTGAATATGAGATGGCCATATTGAGTCAAGCTAATTGGGTAAAACCAAACAAAAAAGAAAGATCATGTAAGTACCTACTTTTAAACATATAATTTGCGAAGGAAGTTCTAATTTTTAAAACGTCTCATTTGATAACAATTTTTTTTTTTTTTTTTTTTAATTTTAAATTTATGCTATAATTTCATCTCAACTTTTGAATTATAGTTTGCATCTTTGTTAAAGAAAAAACGTATCCTAAAAACAAAAAAAAGTTTTTGAATTTTTTTCCCCCAAAACTTGATTTGGTTGCTTTGCTTTTGAAAATATAAGAATGAAATTTGTGTTTATAAGCTTAATTTTCAAAAACCACAAACCAAAAGTGTAAACGTTTATCCCTATGAACTCAAATGAGGAGGAGTTGCTAGAGTTGGTTGTTGGATTATTGCTTGGTGGTTTAACATGATATTAGAGCAAGATGTCATGCGTTTGAATACTTTTGTAAAGTCATTTCTTCCCCTAATTAACATTGAATATTTCACATGTTCCCAACTTTAAGATTTTGGGTTGATTGGTGTTTTAACGTTTGGGTTTCTTTTTTTTGTGCCGATAAACGTTGGTTTGAGTTTGGCGGTGTAGAAACGGGTTGCAGATTTCATATTGTTGAGCGATCTCAAGGAACCGAAGAAGGGGTTTATTCACGATAATAGCATTATTGTTGAAGTGAGTATGAATGTTGTCTCTACCTTGAAAAAGTTTTTGTAGAAGGGAAAATATAGATGAGTTGCCGTTTTGGGGATCATAATGGAGTATTAGATGCAAAATTTTGAAGGATTATTTATTTTTTCTATTCTAATGTCTTAGGATGCACAGCCTTTTGAAGATGGTTTAAAATTTTGTATATCTGAACAAATGTGTTATGTTTTTGCTCTTGCAAAAGCCAAGAGATTCATCAATTTATGA

mRNA sequence

ATGCAGCTTTTCTTGTCTTCTTGTTTGTGGCGAGGCTATGAAACAGGCGGATATGGCAGATTCTACACTTGGATGATATCCTTGTATCCTAAAGGATCCTCCAAAGCAACCGCTGGTTATCTGTCACTGTACTTGTTGTTTGATAGTTTCAAAGAACTTCCTCAAGGTTCTCAAGTTTACATTGAATATGAGATGGCCATATTGAGTCAAGCTAATTGGGTAAAACCAAACAAAAAAGAAAGATCATATTTCATATTGTTGAGCGATCTCAAGGAACCGAAGAAGGGGTTTATTCACGATAATAGCATTATTGTTGAAGATGCACAGCCTTTTGAAGATGGTTTAAAATTTTGTATATCTGAACAAATGTGTTATGTTTTTGCTCTTGCAAAAGCCAAGAGATTCATCAATTTATGA

Coding sequence (CDS)

ATGCAGCTTTTCTTGTCTTCTTGTTTGTGGCGAGGCTATGAAACAGGCGGATATGGCAGATTCTACACTTGGATGATATCCTTGTATCCTAAAGGATCCTCCAAAGCAACCGCTGGTTATCTGTCACTGTACTTGTTGTTTGATAGTTTCAAAGAACTTCCTCAAGGTTCTCAAGTTTACATTGAATATGAGATGGCCATATTGAGTCAAGCTAATTGGGTAAAACCAAACAAAAAAGAAAGATCATATTTCATATTGTTGAGCGATCTCAAGGAACCGAAGAAGGGGTTTATTCACGATAATAGCATTATTGTTGAAGATGCACAGCCTTTTGAAGATGGTTTAAAATTTTGTATATCTGAACAAATGTGTTATGTTTTTGCTCTTGCAAAAGCCAAGAGATTCATCAATTTATGA

Protein sequence

MQLFLSSCLWRGYETGGYGRFYTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQANWVKPNKKERSYFILLSDLKEPKKGFIHDNSIIVEDAQPFEDGLKFCISEQMCYVFALAKAKRFINL
Homology
BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_038874970.1 (uncharacterized protein LOC120067490 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-15
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 0

Query: 22  YTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQ----------A 81
           YTW I LYP+G S A  GY+S++L FDSF++LPQGS+VY+EY++A+LSQ           
Sbjct: 222 YTWKIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQLGGAYTNYPVK 281

Query: 82  NWVKPNKKERSY--FILLSDLKEPKKGFIHDNSIIVE 107
           +W     K   +  F+ LS++KEP KGF+ D++++VE
Sbjct: 282 HWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVE 318

BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_022146379.1 (ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 22  YTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQANWVKPNKKER 81
           Y W + LYPKG S A  G+LSLYL+ DS KE+ QGS+VY+EYE+A+LSQ    +P K+  
Sbjct: 176 YRWKLWLYPKGCSNAETGFLSLYLILDSSKEILQGSKVYVEYELALLSQLG-AEPEKETY 235

Query: 82  SY--------FILLSDLKEPKKGFIHDNSIIVE 107
           +Y        FI LS+LK+P KG++H++++ VE
Sbjct: 236 NYWFAGGGPNFISLSELKKPLKGYLHNDTLKVE 267

BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_038875772.1 (uncharacterized protein LOC120068142 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 22  YTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQ----------- 81
           Y W I LYP G SKA +G+LS+YLLFDS  +LPQGSQVY+EYEMAILSQ           
Sbjct: 220 YRWKILLYPSGCSKAKSGFLSMYLLFDSSNQLPQGSQVYVEYEMAILSQLEAVPVKETYN 279

Query: 82  -----------ANWVKPNKKERSYFILLSDLKEPKKGFIHDNSIIVE 107
                        W  PN      F  LSDL+EP KG++ +++++ E
Sbjct: 280 CWFGFDGVEAGRGWGAPN------FSSLSDLEEPTKGYLLNDTLVTE 320

BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_022146380.1 (probable inactive serine/threonine-protein kinase fnkC [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-14
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 0

Query: 22  YTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMA---------ILSQAN 81
           Y W + LYPKGSSKA  G+LSLYL ++S++E+PQGSQVY+EYE +         + S   
Sbjct: 179 YRWKLWLYPKGSSKAKTGFLSLYLSYNSYEEIPQGSQVYVEYEDSHNCWFGFGGVESGRG 238

Query: 82  WVKPNKKERSYFILLSDLKEPKKGFIHDNSIIVE 107
           W  PN      F+ L DL EP +GFI D++IIVE
Sbjct: 239 WGHPN------FLSLRDLNEPTEGFIVDDTIIVE 266

BLAST of CaUC01G007500 vs. NCBI nr
Match: XP_022146377.1 (uncharacterized protein LOC111015606 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-12
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 28  LYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQANWVKPNKK-------- 87
           LYPKG  KAT  +LSLYL  DS K+LP+GSQVYIE+EM++LSQ   V  NKK        
Sbjct: 123 LYPKGCPKATTDFLSLYLGLDSLKDLPKGSQVYIEWEMSVLSQFG-VGHNKKTAHNRWLS 182

Query: 88  -----ERSY----FILLSDLKEPKKGFIHDNSIIVE 107
                E S+    F+ LSDL EP KGFI+++++IVE
Sbjct: 183 SGGEYEDSWGVPRFMSLSDLMEPTKGFIYNDTLIVE 217

BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CXZ0 (ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=LOC111015607 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.9e-15
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 22  YTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQANWVKPNKKER 81
           Y W + LYPKG S A  G+LSLYL+ DS KE+ QGS+VY+EYE+A+LSQ    +P K+  
Sbjct: 176 YRWKLWLYPKGCSNAETGFLSLYLILDSSKEILQGSKVYVEYELALLSQLG-AEPEKETY 235

Query: 82  SY--------FILLSDLKEPKKGFIHDNSIIVE 107
           +Y        FI LS+LK+P KG++H++++ VE
Sbjct: 236 NYWFAGGGPNFISLSELKKPLKGYLHNDTLKVE 267

BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CX47 (probable inactive serine/threonine-protein kinase fnkC OS=Momordica charantia OX=3673 GN=LOC111015608 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.2e-14
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 0

Query: 22  YTWMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMA---------ILSQAN 81
           Y W + LYPKGSSKA  G+LSLYL ++S++E+PQGSQVY+EYE +         + S   
Sbjct: 179 YRWKLWLYPKGSSKAKTGFLSLYLSYNSYEEIPQGSQVYVEYEDSHNCWFGFGGVESGRG 238

Query: 82  WVKPNKKERSYFILLSDLKEPKKGFIHDNSIIVE 107
           W  PN      F+ L DL EP +GFI D++IIVE
Sbjct: 239 WGHPN------FLSLRDLNEPTEGFIVDDTIIVE 266

BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CZF3 (uncharacterized protein LOC111015606 OS=Momordica charantia OX=3673 GN=LOC111015606 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 28  LYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQANWVKPNKK-------- 87
           LYPKG  KAT  +LSLYL  DS K+LP+GSQVYIE+EM++LSQ   V  NKK        
Sbjct: 123 LYPKGCPKATTDFLSLYLGLDSLKDLPKGSQVYIEWEMSVLSQFG-VGHNKKTAHNRWLS 182

Query: 88  -----ERSY----FILLSDLKEPKKGFIHDNSIIVE 107
                E S+    F+ LSDL EP KGFI+++++IVE
Sbjct: 183 SGGEYEDSWGVPRFMSLSDLMEPTKGFIYNDTLIVE 217

BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CYF6 (uncharacterized protein LOC111015611 OS=Momordica charantia OX=3673 GN=LOC111015611 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 22  YTWMISLYPKGSSKATAGYLSLYLLFDSFKE-LPQGSQVYIEYEMAILSQAN-------- 81
           Y W I L+PKG S+ +AG+LSLYL+FDSFKE LPQG +VY E+E+A+LS+          
Sbjct: 468 YRWKIRLHPKGCSQESAGFLSLYLIFDSFKELLPQGCRVYAEFEIAVLSKYGVGHKKLES 527

Query: 82  --WVKPNKKERSY----FILLSDLKEPKKGFIHDNSIIVE 107
             W +    E       F+ L DLKE KKG+I D+++IV+
Sbjct: 528 KCWFEFGGIETGLGFPEFMPLRDLKEVKKGYICDDTLIVK 567

BLAST of CaUC01G007500 vs. ExPASy TrEMBL
Match: A0A6J1CZF7 (uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015610 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.5e-10
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 26  ISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQANWVKPNKKERSY-- 85
           +SLYPKGS KA+  YLSL+L  +S KELPQG +VY E+E+A+LS+  W +       +  
Sbjct: 236 MSLYPKGSPKASPDYLSLFLRCESLKELPQGCRVYAEFEIAVLSK-YWFEFGDLGLGFPD 295

Query: 86  FILLSDLKEPKKGFIHDNSIIVE 107
           F+ L DL E  KG+I D+++IVE
Sbjct: 296 FMSLRDLNEVTKGYICDDTLIVE 317

BLAST of CaUC01G007500 vs. TAIR 10
Match: AT2G25320.1 (TRAF-like family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 30/115 (26.09%), Postives = 57/115 (49.57%), Query Frame = 0

Query: 6   SSCLWRGY-ETGGYGRFYTWMISLYPKGSSKATAGYLSLYL-LFDSFKELPQGSQVYIEY 65
           +  LW  Y + GG    Y   + +YP+G S+A  GY+S+YL + D           +  Y
Sbjct: 85  AKALWSKYFDVGG----YDCRLLVYPRGDSQALPGYISIYLQIMDPRGTTSSRWDCFASY 144

Query: 66  EMAILS---------QANWVKPNKKERSY----FILLSDLKEPKKGFIHDNSIIV 106
            ++I++         + +W + + K++S+    F L S + +PK GF+ +N  ++
Sbjct: 145 RLSIVNLVDDSLTIHKDSWHRFSSKKKSHGWCDFTLNSSILDPKMGFLFNNDSLL 195

BLAST of CaUC01G007500 vs. TAIR 10
Match: AT1G31390.1 (TRAF-like family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.0e-04
Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 24 WMISLYPKGSSKATAGYLSLYLLFDSFKELPQGSQVYIEYEMAILSQ 71
          W +  YPKG+ ++T   LSLYL    F+ LP G + +I+Y + +++Q
Sbjct: 36 WHLVAYPKGNGESTNKCLSLYLNVADFQSLPNGWKRHIKYRLTVVNQ 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038874970.15.5e-1546.39uncharacterized protein LOC120067490 [Benincasa hispida][more]
XP_022146379.11.2e-1449.46ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia][more]
XP_038875772.13.5e-1445.79uncharacterized protein LOC120068142 [Benincasa hispida][more]
XP_022146380.14.6e-1450.00probable inactive serine/threonine-protein kinase fnkC [Momordica charantia][more]
XP_022146377.14.3e-1252.08uncharacterized protein LOC111015606 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CXZ05.9e-1549.46ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1CX472.2e-1450.00probable inactive serine/threonine-protein kinase fnkC OS=Momordica charantia OX... [more]
A0A6J1CZF32.1e-1252.08uncharacterized protein LOC111015606 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1CYF66.1e-1247.00uncharacterized protein LOC111015611 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1CZF77.5e-1049.40uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
AT2G25320.12.1e-0426.09TRAF-like family protein [more]
AT1G31390.16.0e-0438.30TRAF-like family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008974TRAF-likeGENE3D2.60.210.10Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain Acoord: 12..107
e-value: 4.0E-12
score: 48.2
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 1..109
score: 13.078065
IPR002083MATH/TRAF domainCDDcd00121MATHcoord: 22..106
e-value: 1.8446E-10
score: 52.7666
NoneNo IPR availableSUPERFAMILY49599TRAF domain-likecoord: 19..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G007500.1CaUC01G007500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding