CaUC01G006620 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G006620
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 7247506 .. 7248673 (-)
RNA-Seq ExpressionCaUC01G006620
SyntenyCaUC01G006620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGATCAGAATTTTACGAGAAAAGTGACAGAGAGCTTCCATTCCTTTCCTTCTTGTGACTTGAATTCCTAGTAAGTTCTCTTCTTCGTTCCTTTCCTTCCTAATCTTCCTATTTCCTCGTAAAGTTATTTTTATTTAAGATTCTAAAATTAAAATAATAATTCATGGTAAGTTTCTGTCTATTTTTTCAGTGAAAATGATACCAGAAAAATGGTACCAGGAAAACAAGAATTTTTTTTCAAAAAAATGGCAAAATGTTGTCAGCTCAATTCTTTTTCGTTAAGTTTGACCAATTGACCATGACAGAGGGTGTGACATTCAGATAAAGACAAAAAAACTACCCCTTTTACCTTTTTTTTTTTTTTTTTTTTTTTTTCAAACTACCTCTTTTACCTATTTTTTTTTAAAAAAAATACTTTTTTTTCTTTCTTTTTTTTTTTTTCTAATTAACCCAAAGAAAAGTAAAAATGAAAGAATTTCAAAAGCACCCCCAAATCTTAAAGTCATCTAATAAGATGAACAGATCAACAAGTTCTTTTAAACTTGTTTATCTTTTGTAATTTTATTCTCAATTGAATGATAATTGGTAATCTTTGTCGGGGAAGACATCCTTATTCGTCTCTTAATTAAATACTCAAATTTACTTAATGACGTTTTATATTGACTCTTAGTAAATTAATTAGTAATTATTTAAATTTAAGATGTAAGATAATAAAAAATTCATCCAAAGCTCATCAAGTGGGCGTGCCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTTTGCCCGCGCAAGTTCGAATCTTGCCGCTCACGTTTTCTTTAAACAATGTAAATCTTGTCTCTATTCCTAGAGTTTAAAGTCAACCAAAAATTATAATATTTTTAAAAAACTCATTTTTATTTAAACTCTTTTGATAACAATTATTTAAAATACACTACAAAATACATTTTTAGTGGTTACCAAACACCAAAATGATTTTTTTTTTTATTAATTATTGAATCTAACATATTACTATTAATATTTCAAATCAAAATATTTTTTTTCTTGCCAAGTATATGACAAATACAAACTAATAATAATAAAAAAGAGAGAAATTAGAATTAATGGTCACATATACTTTGTTTTGAAAGATGACCAAAAATATTTCTAATGAAATGTGA

mRNA sequence

TATGATCAGAATTTTACGAGAAAAGTGACAGAGAGCTTCCATTCCTTTCCTTCTTGTGACTTGAATTCCTATAAATTAATTAGTAATTATTTAAATTTAAGATGTAAGATAATAAAAAATTCATCCAAAGCTCATCAAGTGGGCGTGCCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTTTGCCCGCGCAAGTTCGAATCTTGCCGCTCACATGACCAAAAATATTTCTAATGAAATGTGA

Coding sequence (CDS)

TATGATCAGAATTTTACGAGAAAAGTGACAGAGAGCTTCCATTCCTTTCCTTCTTGTGACTTGAATTCCTATAAATTAATTAGTAATTATTTAAATTTAAGATGTAAGATAATAAAAAATTCATCCAAAGCTCATCAAGTGGGCGTGCCGGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTTTGCCCGCGCAAGTTCGAATCTTGCCGCTCACATGACCAAAAATATTTCTAATGAAATGTGA

Protein sequence

YDQNFTRKVTESFHSFPSCDLNSYKLISNYLNLRCKIIKNSSKAHQVGVPEWLSGMTRNHVGFARASSNLAAHMTKNISNEM
Homology
[Close]
BLAST of CaUC01G006620 vs. NCBI nr
Match: KAG6681294.1 (hypothetical protein I3842_13G086200 [Carya illinoinensis])

HSP 1 Score: 63.5 bits (153), Expect = 9.5e-07
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 37  IIKNSSKAHQVGVPEWLSGMTRNHVGFARASSNLAAH 74
           II +S  AH+VGVPEWLSGMTRNHVGFARA SN AAH
Sbjct: 76  IITDSPIAHRVGVPEWLSGMTRNHVGFARAGSNPAAH 112

[Close]
BLAST of CaUC01G006620 vs. NCBI nr
Match: PTQ31581.1 (hypothetical protein MARPO_0109s0014 [Marchantia polymorpha] >BBN02623.1 hypothetical protein Mp_2g16730 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-04
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 43 KAHQVGVPEWLSGMTRNHVGFARASSNLAAHMT 76
          K + V VPEWLSGMTRNHVGFARA SN A H T
Sbjct: 31 KQYSVAVPEWLSGMTRNHVGFARAGSNPAGHGT 63

[Close]
BLAST of CaUC01G006620 vs. ExPASy TrEMBL
Match: A0A2R6WCJ7 (Uncharacterized protein OS=Marchantia polymorpha OX=3197 GN=MARPO_0109s0014 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 43 KAHQVGVPEWLSGMTRNHVGFARASSNLAAHMT 76
          K + V VPEWLSGMTRNHVGFARA SN A H T
Sbjct: 31 KQYSVAVPEWLSGMTRNHVGFARAGSNPAGHGT 63

The following BLAST results are available for this feature:
BLAST of CaUC01G006620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6681294.19.5e-0781.08hypothetical protein I3842_13G086200 [Carya illinoinensis][more]
PTQ31581.14.4e-0475.76hypothetical protein MARPO_0109s0014 [Marchantia polymorpha] >BBN02623.1 hypothe... [more]
BLAST of CaUC01G006620 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G006620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2R6WCJ72.1e-0475.76Uncharacterized protein OS=Marchantia polymorpha OX=3197 GN=MARPO_0109s0014 PE=4... [more]
BLAST of CaUC01G006620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G006620.1CaUC01G006620.1mRNA