CaUC01G005360 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G005360
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
LocationCiama_Chr01: 5648647 .. 5650701 (-)
RNA-Seq ExpressionCaUC01G005360
SyntenyCaUC01G005360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGTATTGTGTTCACTTTAAAATTTTGTCTGATCTTTTGAAATTTTCATTCTGTAATGCTGTGAGCCTTTGTGATAAATCCTAGAAGATGAAAATTATAGTTTGTATTTCTTTTGAAGAAAAAATCCTAATTTTGGTAGTTATTGTTATTGTGCCATTATGGTTTTGAATCTTATAAATTTTGATAGAGTTGGTGTTCTAATCAAAGATTTGCAAATCATTCTTGTGTCCAGAGGGTGTGGAGATATGTCTGTGTTGGGTTAGTTTTCTTGGATTGGTTAAAAGATGTTTTAATCCAATCATCTTAGGTGATGTGATGTAATTTAATCTAATTATGGTGTTTTTTTTTAATGTCAGGTTGTTTGACTTAAAAGTCATTTTTATTTAAACTTTTGATAAAAACTGTTTATTGGAAATAATTTTGAGTGGTTGTGAAATATTTTAATTTTTTTTAATGACTTGTTTTTAAAATTAAACACTTGAAAAGTTAAATCAAATATTCTCTTGGTTATTGAGGTTTGGATGGTTTAAGTGTTGGTATAATAGGTCAGAGTAGTAAATAAATCAATCAATTGTGGTTAGTTTTTCCTTTTCTTTTTTTTTTTTTTTCCTCAAAATTTGATAGTTTTAGGAGTTTATTCGAATATATTTGTAAGTATATAAAAAATAAATAGAAGCACTGTAAGAATCTATCCAGAGCTCTTTAATGTCGTATGGGATCTACCTATTCGTATAATCTTCTAAATCTATAATTTAAACCTTCAAGGAAATTTTGATTAAATAATTTGAAACGATGATGTTTTTGTTCACTTCCCATTCATCAATTTCTCCATTGTTTGTCATATTAGCCACATAGGTATCCTTGAAATATAATAAAATAATATATTGCTTAGCTCCCATTAGCCACATAGGTATTATGTTTTTAAGTTTTGATTACAAAACTTGACTTGAATTTTGAAAACATTCTTAAAGTCTAGACTAAAATAAGTTAATTAATTTAAAATTAATAAGAGAAGGTAATGTTTGATTTTTCTGTTTTAAAAAATTAAACTTATAAACAGTACTTTCATCCATAATTTTCTATGTTTTATTATCTACATCTATCAATGTTTTTAAAAATTAAGCCAAATTTTAAAAGCTAAAAAAAACAATAATAATAAATTTAATAACGTTGTTTTTTTATTTTTTGAAATTTGACTAAGAATTCAAGTGTTTTTTTTAGCGAATCATAAATTGAAAAATTAAGAGGAAAAAAAATAGAATTTTAAAAAATAAAATCTTTATCAAAAGGCATAATAATATCGAACATCTAAATTTGAAATCCCCATATGAATAGTGGTAGTAATTTCACATAATACACAGCATCTAAATTTGAATTCCAATAATTATTAAAATCCTCAGCACATGATAATCTTTGAGTTGACTTTAAAAAACCATTGAAGTTGCTTTCACAACACAAAAGTGTCTGCTTCCACAACAAAAAGCTTCTTCACTACACTTTCCACATTACCAAACCCTTTAAATACCCAAAAACCTTCACACTTCCCATTCATTCTTCTCTCTTCAATTCCAATTTCCAAGTAGAAGCTTACAAGCCAATTTCCACTGCAGCCATGGCTAATTCCATTATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAGTTTTGATCAACAAAACGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAACAGAACAAAATTTCATGCTTCAGAAGAATCCCACAGTTGATGTGTGTGAAGTGACAGAGATTCAAAATGAACCGGAGAGATGCATGAAATTCAACTTCAACGATAATGTTGAACAGAGTGATGATGATCATGATGAGGATGAGGATGAGGATGAGGATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCAAATAACCTTGAGATCGGTCGAATAG

mRNA sequence

ATGGTGGAAGCTTACAAGCCAATTTCCACTGCAGCCATGGCTAATTCCATTATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAGTTTTGATCAACAAAACGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAACAGAACAAAATTTCATGCTTCAGAAGAATCCCACAGTTGATGTGTGTGAAGTGACAGAGATTCAAAATGAACCGGAGAGATGCATGAAATTCAACTTCAACGATAATGTTGAACAGAGTGATGATGATCATGATGAGGATGAGGATGAGGATGAGGATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCAAATAACCTTGAGATCGGTCGAATAG

Coding sequence (CDS)

ATGGTGGAAGCTTACAAGCCAATTTCCACTGCAGCCATGGCTAATTCCATTATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAGTTTTGATCAACAAAACGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAACAGAACAAAATTTCATGCTTCAGAAGAATCCCACAGTTGATGTGTGTGAAGTGACAGAGATTCAAAATGAACCGGAGAGATGCATGAAATTCAACTTCAACGATAATGTTGAACAGAGTGATGATGATCATGATGAGGATGAGGATGAGGATGAGGATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCAAATAACCTTGAGATCGGTCGAATAG

Protein sequence

MVEAYKPISTAAMANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDHDEDEDEDEDDFRRRVEEFIEKVNRGWREERQITLRSVE
Homology
BLAST of CaUC01G005360 vs. NCBI nr
Match: XP_031742158.1 (probable ATP-dependent RNA helicase ddx52 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-44
Identity = 110/149 (73.83%), Postives = 125/149 (83.89%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQN-DYDMPLSIVIHS 72
           MA+SI+E+AA+A SSTLFIFCFFNLIIL+I FTS+P  ++SSFDQQN D DMPLSIVIHS
Sbjct: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRP--ATSSFDQQNDDNDMPLSIVIHS 60

Query: 73  NTNTTEQNFMLQKNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDHD---EDEDEDED 132
            TNTTEQN MLQK+P V VCEV E QNE ERC+ FN N +VEQSDDD++   EDEDEDED
Sbjct: 61  KTNTTEQNSMLQKDPIVGVCEVIESQNETERCVNFNCNVDVEQSDDDNEDDYEDEDEDED 120

Query: 133 DFRRRVEEFIEKVNRGWREERQITLRSVE 158
           DFR+RVEEFIEKVNRGWREER  T   V+
Sbjct: 121 DFRQRVEEFIEKVNRGWREERLRTFGRVQ 147

BLAST of CaUC01G005360 vs. NCBI nr
Match: KAG6605668.1 (hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-38
Identity = 106/150 (70.67%), Postives = 118/150 (78.67%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           MA+SI+E+AAEA SSTLFIFC FNLI+LIILFTS+PVSSSS  D QN  D+PLSIVIHSN
Sbjct: 1   MADSILELAAEAASSTLFIFCIFNLILLIILFTSRPVSSSS--DHQNHDDVPLSIVIHSN 60

Query: 73  TNTTEQNFMLQKNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDH-----DEDEDEDE 132
           TN  +QNFMLQKN  VDVC VTE  NEP+      F+D+VE S DDH     DEDE EDE
Sbjct: 61  TN-AQQNFMLQKNAIVDVCAVTETLNEPD------FSDSVEGSGDDHEDEDEDEDEVEDE 120

Query: 133 DDFRRRVEEFIEKVNRGWREERQITLRSVE 158
           +DF+RRVEEFIEKVN GWREERQ T R VE
Sbjct: 121 EDFKRRVEEFIEKVNSGWREERQRTSRLVE 141

BLAST of CaUC01G005360 vs. NCBI nr
Match: XP_024928006.1 (uncharacterized protein LOC112491100 [Ziziphus jujuba])

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-11
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M +S  ++  +  S++LF+FCF NLII+IIL  SK   S ++FDQ+N   +PLS+    +
Sbjct: 1   MFDSTYDLITQTASNSLFVFCFCNLIIVIILVGSK---SITNFDQEN--RIPLSVATKRS 60

Query: 73  TNTTEQNFMLQKNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDHDEDED-EDEDDFR 132
           T+         +  T+D  +V E  +E     K   N NV  ++ ++DE+E+ ED+D+ R
Sbjct: 61  TD--------DRQGTIDAKQVHEEVDEVSNAKKSLGNHNVGSNEAENDEEEENEDDDELR 120

Query: 133 RRVEEFIEKVNRGWREERQITLRSV 157
           RRVEEFIEKVNRGW+ E  IT + V
Sbjct: 121 RRVEEFIEKVNRGWKAEMLITRQLV 132

BLAST of CaUC01G005360 vs. NCBI nr
Match: QHO42419.1 (uncharacterized protein DS421_5g153990 [Arachis hypogaea])

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-10
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M +SI+E   +A SS+ FIFCF N II+ IL   KP + SSS  Q+N    P S+  +  
Sbjct: 1   MLDSIVEFVTQAASSSAFIFCFCNFIIVYILVDLKP-TLSSSVHQENSEVTP-SMGTNLQ 60

Query: 73  TNTTEQNFMLQKNP---TVDVCEVTEIQNEPERCMKFN---------------FNDNVEQ 132
           T  T   F++QK+     + V  V +++ E E  +K                 F + V++
Sbjct: 61  TQETNSKFLVQKDTELRAIQVSYVRQVEAEAEAEVKAKLIEVDIIETIGNDECFVEEVKK 120

Query: 133 SD-----DDHDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT 153
            D     ++ +E+E+EDED+ R+RVEEFIEKVN+GW+EE  IT
Sbjct: 121 EDEKEEKEEKEEEEEEDEDELRKRVEEFIEKVNKGWKEELLIT 161

BLAST of CaUC01G005360 vs. NCBI nr
Match: XP_020958837.1 (uncharacterized protein LOC110262661 [Arachis ipaensis] >QHO14112.1 uncharacterized protein DS421_15g521350 [Arachis hypogaea])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M +SI+E   +A SS+ FIFCF NLII+ IL   KP  SSS   QQ + ++  S+  +  
Sbjct: 1   MLDSIVEFITQAASSSAFIFCFCNLIIVYILLDLKPTLSSSV--QQENSEVTPSMGTNLQ 60

Query: 73  TNTTEQNFMLQKNP---TVDVCEVTEIQNEPERCMKFNFNDNV---------------EQ 132
              T   F++QK+     + V  V +++ E E   K    D +               E 
Sbjct: 61  KQETNSKFLVQKDTELRAIQVSYVRQVEAEAEAEAKLIEVDIIETIGNDECFVEEVKKED 120

Query: 133 SDDDHDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT 153
            +++ +E E+ED+D+ R+RVEEFIEKVN+GW+EE  IT
Sbjct: 121 EEEEKEEKEEEDDDELRKRVEEFIEKVNKGWKEELLIT 156

BLAST of CaUC01G005360 vs. ExPASy TrEMBL
Match: A0A6P6G1P3 (uncharacterized protein LOC112491100 OS=Ziziphus jujuba OX=326968 GN=LOC112491100 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M +S  ++  +  S++LF+FCF NLII+IIL  SK   S ++FDQ+N   +PLS+    +
Sbjct: 1   MFDSTYDLITQTASNSLFVFCFCNLIIVIILVGSK---SITNFDQEN--RIPLSVATKRS 60

Query: 73  TNTTEQNFMLQKNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDHDEDED-EDEDDFR 132
           T+         +  T+D  +V E  +E     K   N NV  ++ ++DE+E+ ED+D+ R
Sbjct: 61  TD--------DRQGTIDAKQVHEEVDEVSNAKKSLGNHNVGSNEAENDEEEENEDDDELR 120

Query: 133 RRVEEFIEKVNRGWREERQITLRSV 157
           RRVEEFIEKVNRGW+ E  IT + V
Sbjct: 121 RRVEEFIEKVNRGWKAEMLITRQLV 132

BLAST of CaUC01G005360 vs. ExPASy TrEMBL
Match: A0A2N9GM45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-11
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M +S++E+  +A S++LFIFCF NLII I+L  SK   SSS F QQ   ++PLS+VI+++
Sbjct: 1   MFDSMLELITQAASNSLFIFCFCNLIIAILLVASK---SSSDFGQQG--EIPLSVVINTS 60

Query: 73  TN----TTEQNFMLQKNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDHDEDEDEDED 132
           TN    T  +          +  EV+     P         D  E  ++++ +DEDED+D
Sbjct: 61  TNHKHVTNGKQVFFYNKMLRNFDEVSYSHEAP-------VADKEESGNNNNKKDEDEDDD 120

Query: 133 DFRRRVEEFIEKVNRGWREE 149
           + RRRVEEFIEKVN+GW+ E
Sbjct: 121 ELRRRVEEFIEKVNKGWKAE 128

BLAST of CaUC01G005360 vs. ExPASy TrEMBL
Match: A0A6P5NPZ6 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Arachis duranensis OX=130453 GN=LOC110281203 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M +SI+E   +A SS+ FIFCF NLII+ IL   KP + SSS  Q+N    P S+  +  
Sbjct: 1   MLDSIVEFVTQAASSSAFIFCFCNLIIVYILVDLKP-TLSSSVHQENSEVTP-SMGTNLQ 60

Query: 73  TNTTEQNFMLQKNPTVDVCEVT-----------EIQNEPE-RCMKFNFNDNV-------- 132
           T  T   F++QK+  +   +V+           E++ E E + ++ +  +N+        
Sbjct: 61  TQETNSKFLVQKDTELRAIQVSYVRQAEAEAEAEVEVEVEAKLIEVDIIENIGNGECFVE 120

Query: 133 ----EQSDDDHDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT 153
               E   ++ +E E+ED+D+ R+RVEEFIEKVN+GW+EE  IT
Sbjct: 121 EVKKEDEKEEKEEKEEEDDDELRKRVEEFIEKVNKGWKEELLIT 162

BLAST of CaUC01G005360 vs. ExPASy TrEMBL
Match: A0A5N6RPH7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018156 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M + + E+  +A S+ LFIFCF NLII I+L  SKP S        +  ++P+S+VI++ 
Sbjct: 1   MLDYMFELITQAASNHLFIFCFCNLIIAIVLVGSKPTSKIG-----HAAEIPISLVINTR 60

Query: 73  TN----TTEQNFMLQKNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDHDEDEDEDED 132
           TN       +     K    +V +V+  Q  P    +   N N    ++D D+D+D+D+D
Sbjct: 61  TNRNPGADSKQLFYDKETLRNVNQVSCSQEAPVDDGR-EENGNGSNKNEDEDDDDDDDDD 120

Query: 133 DFRRRVEEFIEKVNRGWREE 149
           + RR+VEEFIEKVN+GW+ E
Sbjct: 121 ELRRKVEEFIEKVNKGWKAE 134

BLAST of CaUC01G005360 vs. ExPASy TrEMBL
Match: A0A7N2QYC4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 59/141 (41.84%), Postives = 85/141 (60.28%), Query Frame = 0

Query: 13  MANSIMEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSN 72
           M +S++E+  +A S++LFIFCF NLII I+L  SK   SSS   QQ   ++PLS+VI+++
Sbjct: 1   MFDSMLELITQAASNSLFIFCFCNLIIAILLVVSK---SSSELGQQG--EIPLSVVINTS 60

Query: 73  TNTTEQNFMLQ----KNPTVDVCEVTEIQNEPERCMKFNFNDNVEQSDDDHDEDEDEDED 132
           TN  +  +  Q         +V EV+  +  P         D  E  +  H++DE+ED+D
Sbjct: 61  TNHKQGTYGKQVFDDDKMLTNVDEVSYFREAP-------VVDKEESGNIRHNKDEEEDDD 120

Query: 133 D-FRRRVEEFIEKVNRGWREE 149
           D  RRRVEEFIEKVN+ W+ E
Sbjct: 121 DELRRRVEEFIEKVNKEWKAE 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031742158.11.7e-4473.83probable ATP-dependent RNA helicase ddx52 [Cucumis sativus][more]
KAG6605668.11.8e-3870.67hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_024928006.14.2e-1141.38uncharacterized protein LOC112491100 [Ziziphus jujuba][more]
QHO42419.17.9e-1038.04uncharacterized protein DS421_5g153990 [Arachis hypogaea][more]
XP_020958837.11.0e-0937.34uncharacterized protein LOC110262661 [Arachis ipaensis] >QHO14112.1 uncharacteri... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P6G1P32.0e-1141.38uncharacterized protein LOC112491100 OS=Ziziphus jujuba OX=326968 GN=LOC11249110... [more]
A0A2N9GM454.5e-1142.14Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1[more]
A0A6P5NPZ61.9e-0936.59X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Ara... [more]
A0A5N6RPH73.2e-0937.86Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018156 PE=4 SV=1[more]
A0A7N2QYC44.2e-0941.84Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..130
NoneNo IPR availablePANTHERPTHR36595TRANSMEMBRANE PROTEINcoord: 13..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G005360.1CaUC01G005360.1mRNA