CaUC01G003710 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G003710
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description40S ribosomal protein S13
LocationCiama_Chr01: 4081218 .. 4083548 (+)
RNA-Seq ExpressionCaUC01G003710
SyntenyCaUC01G003710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGCCGTGCTAGGGTTTTGGTTATCGGCCGTCGCGGTAGAGCAACTCTCATCGAACTCGAGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGGTTGGTTTCCAATCTCCAATTTCTTTCTGATTCACTTCCATTTCGTCTGTTGATTTCATTTGTTGAATATGGTTGAAATTCTTCCCAACATTGACTCCATTTTCTCATTTACAGTAAGGGTATTTCAGCCTCTGCATTGCCCTACAAGAGGACGCCACCAAGTTGGCTCAAGATCTCTTCTACAGATGTAAGTATGCTACAGGAAATTCTGAGCTTTGAGAATAACTTCCAGGATTTTGTTATTTCTTCTATAATAGTCATTTTTTTCCTATTGTAATTTGAACTTAGGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGTTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCTCAGGTCAGAAGTGTTACTGGAAGCAAAATCTTGCGTATTCTTAAGGCCCATGGTATTCTTCTTTTCCCTGACGCCAAGCATTTCCATTTAAGTTGCTTAGGTGCATTTTTTCACTGTAGTTTGGCTTGTACTATCTAGGATTGGCACCGGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTAGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAGTAAGTTTTCTTCATGCTCTGATAATTGGCAGTCAATTATCGTTATACTTTGTATTTGATGCTATCAAATCATTAATTTAGTTTCATATTTTAGTATAACTACTTTTCTTCTTCTAAAGCTTGTGATATTAAGCATGGTCTAGTTTGAGTTCTTTCTTATATAATATTTACCTTTATACATATGAATCAAGAATCATGCTGACCTTTGACCATATGGAATTTTATGTTAAAATATACTGTGGTGCATAACCATAATTCAAACCCAATAGTAACAAGGAAGCATAGAAGGGAAACATGGAAGATACCTTTGTTTCTGATCCAATGGCAACTAGTTTAGAATGGTTACATGTTATCGCTGTTAAATAAAAAAATTTGGGGCATGAACATGAGTTAACATTTGTAGCTAGTTATTAAATTAAATGTTGATCTTACATATTGGGTTGGCGAACTATTACTCTCTCGGCTGTGTTTTTGGTGGGTCATGTTTGCGTCCTAATTCTTTTGAGTGCTAGTATCCTCTTGTGTCTTTGGATTTAGTGCTTGTCTGTAGTGCTAGTGTCGTTACCTGATTTGTAGGTTTAGAATCCTTTTTCACTGGGCCATTTTGCGTAGTTAAACTAGCTCTACTATCATTTTACAAAGACAGTCACATTCAGAATTGACTGCTTTTCCATTTTAAATGTTATTATGGTCTGTTAGTTTTTATTTTTTTTTATTTTGGTATATGAACTTTGCTTAGAAATCTAATTTGGTGATTGTTTGGGCGATTTTTTTTATTAGAGATTTTTGTTTTTAGAGCCCGTAATTGGTGCTTGGTTTCTTCCCTCATGATATGTGTTCATGATTGATAAGCAGCTGCTTTATGAAGTTTCTTTTTCCCTTGCAGCGAGTCAACAACTGCTAGCACCCTGGTTGCATAATTTTGAGTTAAGAGTGTTTGGTGGCTACATGATTCGATCTGTGTTCGGCTTCTGTCATTGTGAGGTCAGGGAGATCAGTGAGAGTTGTGACTTGGTTTTTATTTATGGCATCAGTTTTGACTTCAGTTTTTATTTAGTATGGAATCTGTAGACTTATTTGGCCAGATTTAAAAGCAAATTAGAAAAGATTGCGTTGCCTTAATGGCGCATGTTTCCCTTAAATAGTAGTATCCACTTAAAGCAAGAGCAATTTTCTTAAGATGTGCACTTCTGAGTTATTAGTTAAAGTTGAGAAAGAACCCTGCAAAAGAGCAATACTGAAAAGCACAATTTGGAACAATTTGGAATATTGGTGTTTTTTTATAGGTTGTAAAAGTAGTGTTTAGTGGTTTGGTTGCGACCAATGTTGGCAAGAAACCTGCCCATTATTTGTATTCTCAGTTTTCTTCTGTTTTGGTATAATGGTTTTTATCGAGTCTCACGTTCTGAAGTCCTTCCATTCTCCGTAGCCGCTATTCTTAACCCACAATGTTTGCCCATGATAGTTCCTTGTATATTTAATTTTGACCGTTTTAGATCGATCAATTTTGATATTGCTT

mRNA sequence

ATGCCAAGCCGTGCTAGGGTTTTGGTTATCGGCCGTCGCGGTAGAGCAACTCTCATCGAACTCGAGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGGTTGTAAGGGTATTTCAGCCTCTGCATTGCCCTACAAGAGGACGCCACCAAGTTGGCTCAAGATCTCTTCTACAGATGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGTTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCTCAGGTCAGAAGTGTTACTGGAAGCAAAATCTTGCGTATTCTTAAGGCCCATGGATTGGCACCGGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTAGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCTAGCACCCTGGTTGCATAATTTTGAGTTAAGAGTGTTTGGTGGCTACATGATTCGATCTGTGTTCGGCTTCTGTCATTGTGAGGTCAGGGAGATCAGTGAGAGTTGTGACTTGGTTTTTATTTATGGCATCAGTTTTGACTTCAGTTTTTATTTAGTATGGAATCTGTAGACTTATTTGGCCAGATTTAAAAGCAAATTAGAAAAGATTGCGTTGCCTTAATGGCGCATGTTTCCCTTAAATAGTAGTATCCACTTAAAGCAAGAGCAATTTTCTTAAGATGTGCACTTCTGAGTTATTAGTTAAAGTTGAGAAAGAACCCTGCAAAAGAGCAATACTGAAAAGCACAATTTGGAACAATTTGGAATATTGGTGTTTTTTTATAGGTTGTAAAAGTAGTGTTTAGTGGTTTGGTTGCGACCAATGTTGGCAAGAAACCTGCCCATTATTTGTATTCTCAGTTTTCTTCTGTTTTGGTATAATGGTTTTTATCGAGTCTCACGTTCTGAAGTCCTTCCATTCTCCGTAGCCGCTATTCTTAACCCACAATGTTTGCCCATGATAGTTCCTTGTATATTTAATTTTGACCGTTTTAGATCGATCAATTTTGATATTGCTT

Coding sequence (CDS)

ATGCCAAGCCGTGCTAGGGTTTTGGTTATCGGCCGTCGCGGTAGAGCAACTCTCATCGAACTCGAGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGGTTGTAAGGGTATTTCAGCCTCTGCATTGCCCTACAAGAGGACGCCACCAAGTTGGCTCAAGATCTCTTCTACAGATGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGTTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCTCAGGTCAGAAGTGTTACTGGAAGCAAAATCTTGCGTATTCTTAAGGCCCATGGATTGGCACCGGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTAGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCTAGCACCCTGGTTGCATAA

Protein sequence

MPSRARVLVIGRRGRATLIELEKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Homology
[Close]
BLAST of CaUC01G003710 vs. NCBI nr
Match: KJB09907.1 (hypothetical protein B456_001G174200, partial [Gossypium raimondii])

HSP 1 Score: 301.2 bits (770), Expect = 6.0e-78
Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = 0 

Query: 29  QPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDS 88
           QPWVVCT  GCKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDS
Sbjct: 18  QPWVVCTAEGCKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDS 77

Query: 89  HGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 148
           HGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLIL
Sbjct: 78  HGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 137

Query: 149 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 183
           VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 138 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 171

[Close]
BLAST of CaUC01G003710 vs. NCBI nr
Match: KAA0042849.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 150/171 (87.72%), Postives = 154/171 (90.06%), Query Frame = 0 

Query: 9   VIGRRGRATLIEL--EKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVED 68
           + GRR RATLIEL   KQG+ RQPWV        GISASALPYKRTPPSWLKISSTDVED
Sbjct: 11  IAGRRSRATLIELRKRKQGQGRQPWV--------GISASALPYKRTPPSWLKISSTDVED 70

Query: 69  NICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 128
           NICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKA
Sbjct: 71  NICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKA 130

Query: 129 VSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 178
           VSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Sbjct: 131 VSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA 173

[Close]
BLAST of CaUC01G003710 vs. NCBI nr
Match: XP_022922396.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6579439.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016913.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6606139.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 284.6 bits (727), Expect = 5.8e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. NCBI nr
Match: XP_038874585.1 (40S ribosomal protein S13-like [Benincasa hispida])

HSP 1 Score: 283.5 bits (724), Expect = 1.3e-72
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. NCBI nr
Match: KAF7810164.1 (40S ribosomal protein S13 [Senna tora])

HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 143/164 (87.20%), Postives = 150/164 (91.46%), Query Frame = 0 

Query: 19  IELEKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTP 78
           +++   GK      +  +V  KGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTP
Sbjct: 127 VDVGSDGKILYEDFIARMVANKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTP 186

Query: 79  SQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK 138
           SQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK
Sbjct: 187 SQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK 246

Query: 139 DKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 183
           DKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 247 DKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 290

[Close]
BLAST of CaUC01G003710 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.3e-74
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG
Sbjct: 9   KGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.7e-70
Identity = 132/143 (92.31%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-69
Identity = 131/143 (91.61%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.3e-64
Identity = 123/143 (86.01%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI  V+SVTG
Sbjct: 9   KGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YK+TKKLPP WKYESTTASTLVA
Sbjct: 129 YKRTKKLPPTWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. ExPASy TrEMBL
Match: A0A0D2LZT7 (Ribosomal_S13_N domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G174200 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.9e-78
Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = 0 

Query: 29  QPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDS 88
           QPWVVCT  GCKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDS
Sbjct: 18  QPWVVCTAEGCKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDS 77

Query: 89  HGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 148
           HGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLIL
Sbjct: 78  HGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 137

Query: 149 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 183
           VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 138 VESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 171

[Close]
BLAST of CaUC01G003710 vs. ExPASy TrEMBL
Match: A0A5A7TNG4 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003600 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.7e-75
Identity = 150/171 (87.72%), Postives = 154/171 (90.06%), Query Frame = 0 

Query: 9   VIGRRGRATLIEL--EKQGKERQPWVVCTVVGCKGISASALPYKRTPPSWLKISSTDVED 68
           + GRR RATLIEL   KQG+ RQPWV        GISASALPYKRTPPSWLKISSTDVED
Sbjct: 11  IAGRRSRATLIELRKRKQGQGRQPWV--------GISASALPYKRTPPSWLKISSTDVED 70

Query: 69  NICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 128
           NICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKA
Sbjct: 71  NICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKA 130

Query: 129 VSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 178
           VSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Sbjct: 131 VSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA 173

[Close]
BLAST of CaUC01G003710 vs. ExPASy TrEMBL
Match: A0A6J1HYG9 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. ExPASy TrEMBL
Match: A0A6J1E411 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.8e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. ExPASy TrEMBL
Match: A0A0A0KMS8 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.4e-72
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG
Sbjct: 9   KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           +KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 265.8 bits (678), Expect = 2.6e-71
Identity = 132/143 (92.31%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of CaUC01G003710 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 263.8 bits (673), Expect = 9.9e-71
Identity = 131/143 (91.61%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 40  KGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTG 99
           KGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTG
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 100 SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 159
           SKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 128

Query: 160 YKKTKKLPPVWKYESTTASTLVA 183
           YKKTKKLPPVWKYESTTASTLVA
Sbjct: 129 YKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:
BLAST of CaUC01G003710 vs. NCBI nr
Match NameE-valueIdentityDescription
KJB09907.16.0e-7896.10hypothetical protein B456_001G174200, partial [Gossypium raimondii][more]
KAA0042849.11.4e-7487.7240S ribosomal protein S13 [Cucumis melo var. makuwa][more]
XP_022922396.15.8e-73100.0040S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosoma... [more]
XP_038874585.11.3e-7299.3040S ribosomal protein S13-like [Benincasa hispida][more]
KAF7810164.11.7e-7287.2040S ribosomal protein S13 [Senna tora][more]
BLAST of CaUC01G003710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623029.3e-7497.2040S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P462981.3e-7093.7140S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
P592243.7e-7092.3140S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P592231.4e-6991.6140S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
Q69UI12.3e-6486.0140S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of CaUC01G003710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0D2LZT72.9e-7896.10Ribosomal_S13_N domain-containing protein (Fragment) OS=Gossypium raimondii OX=2... [more]
A0A5A7TNG46.7e-7587.7240S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A6J1HYG92.8e-73100.0040S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 ... [more]
A0A6J1E4112.8e-73100.0040S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=... [more]
A0A0A0KMS81.4e-7298.60Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G15... [more]
BLAST of CaUC01G003710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00100.12.6e-7192.31ribosomal protein S13A [more]
AT3G60770.19.9e-7191.61Ribosomal protein S13/S15 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 101..180
e-value: 2.9E-15
score: 66.7
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 105..176
e-value: 7.3E-15
score: 54.9
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 129..159
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 101..174
e-value: 1.61462E-27
score: 96.8034
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 37..91
e-value: 1.1E-27
score: 107.9
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 39..91
e-value: 5.4E-25
score: 87.2
NoneNo IPR availableGENE3D1.10.287.10coord: 114..182
e-value: 1.4E-40
score: 139.5
NoneNo IPR availableGENE3D4.10.860.130coord: 66..113
e-value: 1.4E-28
score: 100.4
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 39..182
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 39..182
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 22..180
score: 30.063402
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 97..173

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G003710.1CaUC01G003710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome