CaUC01G003280 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC01G003280
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	homeobox protein knotted-1-like 7
Location	Ciama_Chr01: 3499520 .. 3503053 (-)
RNA-Seq Expression	CaUC01G003280
Synteny	CaUC01G003280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTCTTCTTCCTTTTCTCTGTTTGTAAAATTTTCTGAAATTCTCAGACCTGGTGCAGAAAGTTTTGTGTCTCGGATCCCTATATACTCTTCTCTCTCTCTTCTTCATTTCACACCATTAACGATAAAACTGACTCTTCTCTATCACCATATTCATTCAAGACAAAATCCCAACAAACCCTCTTTCTTCTTCTTCTTCAATTATCAGGAACTCACTCACTTCTTGTTCTTTGCTTGTTTTCTTTCTAATTAACCCTTTTTTACACAACCCCTTTTGCTTTTTTTGTGCTAATTTTACTTGGGTTTTTTGGGAGGGTTCTTTGAAATGCAAGAACCTGGGTTGGGAATGATGACTGCTCCCGGTGGATCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGTGATTTTTCTTTTTAAGAATGATTAAGTCGAGTGTCGTGTTCTTTGGGGAAGTGGGTTGAATCTTGTTTTATTTTATGATGGGGTTTCTTTTCTTTTTCTCAGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGTACATATATATATATCATGTCAATTCCTCCAAAACAAGAAAAACAAAGAGAAACACATGATTTGTCTTTAGTTTTGAATGTGCATAAACCTTGAAATGTTACAATATCTATATCTGCATGTTGTTCTCTATTCTACATAATACATGGTTTCTTTGTTTTTTGAGTATATTGAGATGTTAAAACCCAGAGGGTTTTAGTTTCGGTTTGAATTTGGATCCAAAAATGAAGGAAACAAAATAAAGAGAAGAGGAATTTGAAAAGGGGTTTTTGTTTTGTGGGTTGGGAGATGAGGATTATGGTGAAAGCAGACATGGAAGTGGGTGCAAAAAGAGGTCCCTACTTGTGAATACCAAGATTGTAGTTGGGAAAAGGATTGGTCTGTTGGGTTCGGTGAGGGTACCACCAATAGGGGACACCAACCGATAAGATTGCTTGCCCTGGCAAATACTTGTTCCACTGTAAACAATAATAATATTCTCCCTATTATTATATTTGTTCATCTTTTTGCTTTGTAAAGATAGTACATGAACCTAGCTAGCTACTTCTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTATGTATATGTATAAAAATAGACTATAAAAGCTACACTTATCTTATATGATTACATTAATCACCAACTGATCATTTTTAATCATTCAAGTGACCTAATATTTTAGAGGATATGGATATACCCAACAACAAAGTTTTATTATTTCTTTATAATAAAAAACTTCATGGGTGAGAGTGGCCTTTTTAGTCATATGATTTAACTAAACAATGTGTTGAATGAAAGGGTTGTTGTCATTCAAGCAGTTGATTGGGGGGGTTAAAGAAACTAGACATATTATCCATAAAGTAATCTGTTGCTTATTGATTGGTTTGCCAGTTTTAGACCTGCCCACCTACAACTACAATGGTCCCTATTATCAATTTCTTTACCTCCATGGGAGCTCATGATCAGTTATTCTACTTTTTGAGTCTTTATTTTGAACCCTAGCATTTGTAGAATACATAGAAACTATTCATTACTGTGTCTGCCAATGGGTGCTGCTGAGGACCTAAGGGCTGTGGCGTAGGGTCTTAAGTACCAATACAAGCTTTTATATTAAAGACCCTAGGCCGCCTAAAGGCCATTGGAGGCTCATCCCTGACAGTATTTAACTAAATGGCTGCACTTTATGCAGCTTTTTTGGTCTGCTAAATTTGGATATGTTTAAACTAATAAGATCCCGAGATTTGGTAAACAAGTCAAACTATTTATTTTTATCATTCATTGTGTTTAGACATTAATGTCTTCTTTTTGTGCTGGAGATTCAAATTCTATCTCCCTTACCTTAATAATCTGCTATGCAAGAAAGTTAAAAGTGCTTTGTTTAAATTAAATTCAGATGGGGGTTTTGTTTTTTTTTTTTTTGGTCTACTATAAACTTTTGACAAGGGCTAGTTGCTAAAACTATGGTTTTTGATTAAACAATGTTGCTTGTAATAATAACATGCATATGAATCTAAAATTGTCATCTTACTGTAGACACTTGGGTGGTTTTGAATTGTCACACCCTTAATTTTATTTATTGTTTTGGTAGGATAGAAAGTCAAAGATATGTTGAAATGACAAACAACATGTGGGTTTAATGTCATATCAAGTTGCGCAGGAGAAAGAGGTTGTTAAAATATAATGAGATTTGAAGTACAGTTAGTTGTATGATGGAACCCTCGTTGTTATTTTCTAATGGAAAATATGATTGCCCCAATTATTGACACCGCCAAAGTAGTTTAGAGCTTGCTTCTATTGTTGCCAATGTTAGTTCTGATCAAAGTTTAGACTCTTGAAAATTTGAAGCATTTCTCATTACCTAACATGGAGACATTAAAGGTTGAAGTGTCCTTTACCAACTTTGTATGCTATTTATCATGTTCCTCAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGATGAGGACGACATTCCAATGGACTTTTCGCTGGACCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGGTTCCCTTTTCATGGTTAAAAAGAAGCTTTCCCATTACATTGCAGATTAAGAGGGAAAAACAAAGAACTAATTTATATGAACAAATTTGTGGAGTTGAGGATGAACCTGATTTGCAGTCTACAATGTGATGTTATTTTGCAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACCGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGTAAGTAAAGAAAAACACAAACAAACAAATAAAAATCCCATCTTTTCTTTCGTTTTCTACAATTCTAATCGAAACGATGAATAATCCTAAGTTCGAACCTCTATAATATCTCGTCTTTCCTGTTTCAGGAAGATGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA

mRNA sequence

TTCTTCTTCTTCTTCCTTTTCTCTGTTTGTAAAATTTTCTGAAATTCTCAGACCTGGTGCAGAAAGTTTTGTGTCTCGGATCCCTATATACTCTTCTCTCTCTCTTCTTCATTTCACACCATTAACGATAAAACTGACTCTTCTCTATCACCATATTCATTCAAGACAAAATCCCAACAAACCCTCTTTCTTCTTCTTCTTCAATTATCAGGAACTCACTCACTTCTTGTTCTTTGCTTGTTTTCTTTCTAATTAACCCTTTTTTACACAACCCCTTTTGCTTTTTTTGTGCTAATTTTACTTGGGTTTTTTGGGAGGGTTCTTTGAAATGCAAGAACCTGGGTTGGGAATGATGACTGCTCCCGGTGGATCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGATGAGGACGACATTCCAATGGACTTTTCGCTGGACCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGATTAAGAGGGAAAAACAAAGAACTAATTTATATGAACAAATTTGTGGAGTTGAGGATGAACCTGATTTGCAGTCTACAATAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACCGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA

Coding sequence (CDS)

ATGCAAGAACCTGGGTTGGGAATGATGACTGCTCCCGGTGGATCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGATGAGGACGACATTCCAATGGACTTTTCGCTGGACCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGATTAAGAGGGAAAAACAAAGAACTAATTTATATGAACAAATTTGTGGAGTTGAGGATGAACCTGATTTGCAGTCTACAATAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACCGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA

Protein sequence

MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR

Homology

[Close]

BLAST of CaUC01G003280 vs. NCBI nr
Match: XP_004143939.1 (homeobox protein knotted-1-like 7 [Cucumis sativus] >KGN50155.1 hypothetical protein Csa_000116 [Cucumis sativus])

HSP 1 Score: 555.1 bits (1429), Expect = 4.1e-154
Identity = 289/323 (89.47%), Postives = 294/323 (91.02%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTA GGS+G LSGDVSVSG+GVHNSQLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLPMIDAQLSQSHH+LRSYASSQQHH NAHSLTPHERQELDNFLAQYMIVLCSFKEQ
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSG DAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIE 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                      IE
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR----------------------IE 240

Query: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300
           DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI
Sbjct: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300

Query: 301 NQRKRNWHSNSQSVTSLKSKRKR 324
           NQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NQRKRNWHSNSQSVTSLKSKRKR 301

[Close]

BLAST of CaUC01G003280 vs. NCBI nr
Match: XP_038875957.1 (homeobox protein knotted-1-like 7 [Benincasa hispida])

HSP 1 Score: 553.5 bits (1425), Expect = 1.2e-153
Identity = 287/323 (88.85%), Postives = 294/323 (91.02%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTA GGS+GALSGDVSVSG+GVHN QLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGALSGDVSVSGEGVHNGQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLPMIDAQLSQSHH+LRSYASSQQHH NAHSLTPHERQELDNFLAQYMIVLCSFKEQ
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDD+DD+PMDFSLDQSG DAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDDDDVPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIE 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                      IE
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR----------------------IE 240

Query: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300
           DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI
Sbjct: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300

Query: 301 NQRKRNWHSNSQSVTSLKSKRKR 324
           NQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NQRKRNWHSNSQSVTSLKSKRKR 301

[Close]

BLAST of CaUC01G003280 vs. NCBI nr
Match: XP_008437194.1 (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo])

HSP 1 Score: 548.9 bits (1413), Expect = 2.9e-152
Identity = 288/323 (89.16%), Postives = 293/323 (90.71%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTA GGS+G LSGDVSVSG+GVHNSQLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLPMIDAQLSQSHH+LRSYA SQQHH NAHSLTPHERQELDNFLAQYMIVLCSFKEQ
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYA-SQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSG DAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIE 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                      IE
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR----------------------IE 240

Query: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300
           DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI
Sbjct: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300

Query: 301 NQRKRNWHSNSQSVTSLKSKRKR 324
           NQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NQRKRNWHSNSQSVTSLKSKRKR 300

[Close]

BLAST of CaUC01G003280 vs. NCBI nr
Match: KAG6606131.1 (Homeobox protein knotted-1-like 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 515.4 bits (1326), Expect = 3.6e-142
Identity = 274/326 (84.05%), Postives = 289/326 (88.65%), Query Frame = 0


Query: 1   MQEPGLGMMT---APGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLR 60
           MQEPGLGMMT   A   ST ALSGDVS+SGD   N+QLKAEIATHPLYEQLL+AHVACLR
Sbjct: 1   MQEPGLGMMTAAAAAAASTAALSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVACLR 60

Query: 61  VATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSF 120
           VATPIDQLP+IDAQL+QSHHVLRSYA SQQHH +AHSL+PHERQELDNFLAQYMIVLCSF
Sbjct: 61  VATPIDQLPIIDAQLAQSHHVLRSYA-SQQHHQHAHSLSPHERQELDNFLAQYMIVLCSF 120

Query: 121 KEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGT 180
           K+QLQQHVRVHAVEAVMACREIENTLQALTGVSLGEG+GATMSDD+DD+PM+FSLDQSG+
Sbjct: 121 KDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDVPMEFSLDQSGS 180

Query: 181 DAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQST 240
           DAHDMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                     
Sbjct: 181 DAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR--------------------- 240

Query: 241 IIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN 300
            IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN
Sbjct: 241 -IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN 300

Query: 301 WFINQRKRNWHSNSQSVTSLKSKRKR 324
           WFINQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 WFINQRKRNWHSNSQSVTSLKSKRKR 300

[Close]

BLAST of CaUC01G003280 vs. NCBI nr
Match: XP_022958449.1 (homeobox protein knotted-1-like 7 [Cucurbita moschata])

HSP 1 Score: 513.5 bits (1321), Expect = 1.4e-141
Identity = 274/328 (83.54%), Postives = 288/328 (87.80%), Query Frame = 0


Query: 1   MQEPGLGMMT-----APGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVAC 60
           MQEPGLGMMT     A   ST ALSGDVS+SGD   N+QLKAEIATHPLYEQLL+AHVAC
Sbjct: 1   MQEPGLGMMTAAAAAAAAASTAALSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVAC 60

Query: 61  LRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLC 120
           LRVATPIDQLP+IDAQL+QSHHVLRSYA SQQHH +AHSL+PHERQELDNFLAQYMIVLC
Sbjct: 61  LRVATPIDQLPIIDAQLAQSHHVLRSYA-SQQHHQHAHSLSPHERQELDNFLAQYMIVLC 120

Query: 121 SFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQS 180
           SFK+QLQQHVRVHAVEAVMACREIENTLQALTGVSLGEG+GATMSDD+DD+PM+FSLDQS
Sbjct: 121 SFKDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDVPMEFSLDQS 180

Query: 181 GTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQ 240
           G DAHDMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                   
Sbjct: 181 GGDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR------------------- 240

Query: 241 STIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 300
              IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQI
Sbjct: 241 ---IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 300

Query: 301 NNWFINQRKRNWHSNSQSVTSLKSKRKR 324
           NNWFINQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NNWFINQRKRNWHSNSQSVTSLKSKRKR 302

[Close]

BLAST of CaUC01G003280 vs. ExPASy Swiss-Prot
Match: Q9FPQ8 (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 3.4e-119
Identity = 233/325 (71.69%), Postives = 257/325 (79.08%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQE  LGMM    G+T    GD +V  +   N QLK EIATHP+YEQLL+AHVACLRVAT
Sbjct: 1   MQEAALGMM----GATVGGDGDTAVVAE--QNRQLKGEIATHPMYEQLLAAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLP+I+AQLSQSHH+LRSYAS+   +        H+R ELDNFLAQY++VLCSFKEQ
Sbjct: 61  PIDQLPIIEAQLSQSHHLLRSYASTAVGY-------HHDRHELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTD-- 180
           LQQHVRVHAVEAVMACREIEN L +LTG +LGEG+GATMS+DEDD+PMDFS D SG D  
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFS 180

Query: 181 -AHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQST 240
             HDM GFGPLLPTESERSLMERVRQELK+ELKQ  + +                     
Sbjct: 181 GGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSR--------------------- 240

Query: 241 IIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN 300
            IEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINN
Sbjct: 241 -IEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINN 290

Query: 301 WFINQRKRNWHSNSQSVTSLKSKRK 323
           WFINQRKRNWH+NS S+TSLKSKRK
Sbjct: 301 WFINQRKRNWHNNSHSLTSLKSKRK 290

[Close]

BLAST of CaUC01G003280 vs. ExPASy Swiss-Prot
Match: P46606 (Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.3e-118
Identity = 231/325 (71.08%), Postives = 257/325 (79.08%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQE  LGM+ A  G  G   GD +V  +   N Q+K EIATHP+Y+QLL+AHVACLRVAT
Sbjct: 1   MQEAALGMIGATVGGGG--DGDAAVVAE--QNRQMKGEIATHPMYDQLLAAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLP+I+AQLS SHH+LRSYAS+      A   + H+RQELDNFLAQY++VLCSFKEQ
Sbjct: 61  PIDQLPIIEAQLSHSHHLLRSYAST------AVGFSHHDRQELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTD-- 180
           LQQHVRVHAVEAVMACREIEN L +LTG +LGEG+GATMS+DEDD+ MDFS D SG D  
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLQMDFSSDNSGVDFS 180

Query: 181 -AHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQST 240
             HDM GFGPLLPTESERSLMERVRQELK+ELKQ  + +                     
Sbjct: 181 GGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSR--------------------- 240

Query: 241 IIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN 300
            IEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINN
Sbjct: 241 -IEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINN 293

Query: 301 WFINQRKRNWHSNSQSVTSLKSKRK 323
           WFINQRKRNWH+NS S+TSLKSKRK
Sbjct: 301 WFINQRKRNWHNNSHSLTSLKSKRK 293

[Close]

BLAST of CaUC01G003280 vs. ExPASy Swiss-Prot
Match: Q94LW3 (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HOS66 PE=2 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 1.1e-104
Identity = 213/333 (63.96%), Postives = 245/333 (73.57%), Query Frame = 0


Query: 3   EPGLGMMTAPGG-----------STGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSA 62
           E G+G  T  GG           +  A +   + + +      LK EIA HPL EQL++A
Sbjct: 10  EMGVGSFTGGGGGGECSSSSATAAAAAAAAAAAAAAEAEERQLLKGEIAVHPLCEQLVAA 69

Query: 63  HVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYM 122
           HV CLRVATPID LP+IDAQL+QS  +L SYA+   H P    L+PH++QELD+FLAQYM
Sbjct: 70  HVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAA--HHRP---FLSPHDKQELDSFLAQYM 129

Query: 123 IVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDD-IPMDF 182
           ++LCSF+EQLQQHVRVHAVEAVMACREIE +LQ LTG +L EGTGATMS+DED+  PM  
Sbjct: 130 MLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEEGTGATMSEDEDETAPMLE 189

Query: 183 SLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVED 242
                G+D HD+MGFGPL+PT+SERSLMERVRQELKIELKQ  + +              
Sbjct: 190 GPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSR-------------- 249

Query: 243 EPDLQSTIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGL 302
                   IEDVREEILRKRRAGKLPGDTTT+LK WWQQHSKWPYPTEDDKAKLVEETGL
Sbjct: 250 --------IEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGL 309

Query: 303 QLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 324
           QLKQINNWFINQRKRNWH+NSQ+ T LKSKRKR
Sbjct: 310 QLKQINNWFINQRKRNWHNNSQTST-LKSKRKR 314

[Close]

BLAST of CaUC01G003280 vs. ExPASy Swiss-Prot
Match: O04136 (Homeobox protein knotted-1-like 3 OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 6.2e-97
Identity = 192/293 (65.53%), Postives = 221/293 (75.43%), Query Frame = 0


Query: 32  NSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPN 91
           N++ KAEI  HPLYE LLSAHVACLR+ATP+DQLP IDAQL+QS +V+  Y++       
Sbjct: 164 NARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNGMVG 223

Query: 92  AHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSL 151
                  + +ELD F+  Y+++LCSFKEQLQQHVRVHA+EAVMAC EIE +LQ+LTGVS 
Sbjct: 224 -------DDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSP 283

Query: 152 GEGTGATMSDDEDD-IPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELK 211
           GEGT ATMSDDEDD +  D +L   G + HD MGFGPL+PTESERSLMERVRQELK ELK
Sbjct: 284 GEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELK 343

Query: 212 QIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQH 271
           Q  +EK                      I D+REEILRKRRAGKLPGDTT+VLK WWQ H
Sbjct: 344 QGYKEK----------------------IVDIREEILRKRRAGKLPGDTTSVLKAWWQSH 403

Query: 272 SKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 324
           SKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  + T LKSKRKR
Sbjct: 404 SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 427

[Close]

BLAST of CaUC01G003280 vs. ExPASy Swiss-Prot
Match: P48000 (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana OX=3702 GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 5.3e-96
Identity = 197/314 (62.74%), Postives = 231/314 (73.57%), Query Frame = 0


Query: 13  GGSTGALSGDVSVSGDGV---HNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMID 72
           GG      G  + + DGV    N++ KAEI +HPLYEQLLSAHVACLR+ATP+DQLP ID
Sbjct: 134 GGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 193

Query: 73  AQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHA 132
           AQL+QS HV+  Y++       A  L   ++ ELD F+  Y+++LCSFKEQLQQHVRVHA
Sbjct: 194 AQLAQSQHVVAKYSAL---GAAAQGLVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHA 253

Query: 133 VEAVMACREIENTLQALTGVSLGEGTGATMSDDEDD-IPMDFSLDQSGTDAHDMMGFGPL 192
           +EAVMAC EIE +LQ+LTGVS GEG GATMSDDED+ +  D ++   G    D++GFGPL
Sbjct: 254 MEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPL 313

Query: 193 LPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILR 252
           +PTESERSLMERVRQELK ELKQ  +EK                      I D+REEILR
Sbjct: 314 IPTESERSLMERVRQELKHELKQGYKEK----------------------IVDIREEILR 373

Query: 253 KRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 312
           KRRAGKLPGDTT+VLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH
Sbjct: 374 KRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 418

Query: 313 SNSQSVTSLKSKRK 323
           SN  S T LK+KRK
Sbjct: 434 SNPSSSTVLKNKRK 418

[Close]

BLAST of CaUC01G003280 vs. ExPASy TrEMBL
Match: A0A0A0KKD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 2.0e-154
Identity = 289/323 (89.47%), Postives = 294/323 (91.02%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTA GGS+G LSGDVSVSG+GVHNSQLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLPMIDAQLSQSHH+LRSYASSQQHH NAHSLTPHERQELDNFLAQYMIVLCSFKEQ
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSG DAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIE 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                      IE
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR----------------------IE 240

Query: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300
           DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI
Sbjct: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300

Query: 301 NQRKRNWHSNSQSVTSLKSKRKR 324
           NQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NQRKRNWHSNSQSVTSLKSKRKR 301

[Close]

BLAST of CaUC01G003280 vs. ExPASy TrEMBL
Match: A0A1S3ATE3 (homeobox protein knotted-1-like 7 OS=Cucumis melo OX=3656 GN=LOC103482695 PE=3 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.4e-152
Identity = 288/323 (89.16%), Postives = 293/323 (90.71%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTA GGS+G LSGDVSVSG+GVHNSQLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLPMIDAQLSQSHH+LRSYA SQQHH NAHSLTPHERQELDNFLAQYMIVLCSFKEQ
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYA-SQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSG DAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIE 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                      IE
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR----------------------IE 240

Query: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300
           DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI
Sbjct: 241 DVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFI 300

Query: 301 NQRKRNWHSNSQSVTSLKSKRKR 324
           NQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NQRKRNWHSNSQSVTSLKSKRKR 300

[Close]

BLAST of CaUC01G003280 vs. ExPASy TrEMBL
Match: A0A6J1H546 (homeobox protein knotted-1-like 7 OS=Cucurbita moschata OX=3662 GN=LOC111459669 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 6.6e-142
Identity = 274/328 (83.54%), Postives = 288/328 (87.80%), Query Frame = 0


Query: 1   MQEPGLGMMT-----APGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVAC 60
           MQEPGLGMMT     A   ST ALSGDVS+SGD   N+QLKAEIATHPLYEQLL+AHVAC
Sbjct: 1   MQEPGLGMMTAAAAAAAAASTAALSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVAC 60

Query: 61  LRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLC 120
           LRVATPIDQLP+IDAQL+QSHHVLRSYA SQQHH +AHSL+PHERQELDNFLAQYMIVLC
Sbjct: 61  LRVATPIDQLPIIDAQLAQSHHVLRSYA-SQQHHQHAHSLSPHERQELDNFLAQYMIVLC 120

Query: 121 SFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQS 180
           SFK+QLQQHVRVHAVEAVMACREIENTLQALTGVSLGEG+GATMSDD+DD+PM+FSLDQS
Sbjct: 121 SFKDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDVPMEFSLDQS 180

Query: 181 GTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQ 240
           G DAHDMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                   
Sbjct: 181 GGDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR------------------- 240

Query: 241 STIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 300
              IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQI
Sbjct: 241 ---IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQI 300

Query: 301 NNWFINQRKRNWHSNSQSVTSLKSKRKR 324
           NNWFINQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NNWFINQRKRNWHSNSQSVTSLKSKRKR 302

[Close]

BLAST of CaUC01G003280 vs. ExPASy TrEMBL
Match: A0A6J1K9A9 (homeobox protein knotted-1-like 7 OS=Cucurbita maxima OX=3661 GN=LOC111491278 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.8e-139
Identity = 271/327 (82.87%), Postives = 288/327 (88.07%), Query Frame = 0


Query: 1   MQEPGLGMMT---APGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLR 60
           MQEPGLG+MT   A   ST ALSGDVS+SGD   N+QLKAEIATHPLYEQLL+AHVACLR
Sbjct: 1   MQEPGLGVMTAAAAAAASTAALSGDVSISGD---NAQLKAEIATHPLYEQLLAAHVACLR 60

Query: 61  VATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSF 120
           VATPIDQLP+IDAQL+QSHHVLRSYA SQQHH +AHSL+PH+RQELDNFLAQYMIVLCSF
Sbjct: 61  VATPIDQLPIIDAQLAQSHHVLRSYA-SQQHHQHAHSLSPHDRQELDNFLAQYMIVLCSF 120

Query: 121 KEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMS-DDEDDIPMDFSLDQSG 180
           K+QLQQHVRVHAVEAVMACREIENTLQALTGVSLGEG+GATMS DD+DD+P++FSLDQSG
Sbjct: 121 KDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDDVPIEFSLDQSG 180

Query: 181 TDAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQS 240
            DAHDMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                    
Sbjct: 181 GDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR-------------------- 240

Query: 241 TIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQIN 300
             IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQIN
Sbjct: 241 --IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQIN 300

Query: 301 NWFINQRKRNWHSNSQSVTSLKSKRKR 324
           NWFINQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NWFINQRKRNWHSNSQSVTSLKSKRKR 301

[Close]

BLAST of CaUC01G003280 vs. ExPASy TrEMBL
Match: A0A6P3YVU8 (homeobox protein knotted-1-like 7 OS=Ziziphus jujuba OX=326968 GN=LOC107405822 PE=3 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 7.1e-136
Identity = 268/327 (81.96%), Postives = 278/327 (85.02%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSV-SGDGV---HNSQLKAEIATHPLYEQLLSAHVACL 60
           MQEPGLGMM A GG  G   G+VS+ SG GV    + QLKAEIATHPLYEQLLSAHVACL
Sbjct: 1   MQEPGLGMMAAAGGGLG---GEVSISSGGGVGGDQHRQLKAEIATHPLYEQLLSAHVACL 60

Query: 61  RVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCS 120
           RVATPIDQLP+IDAQLSQSHH+LRSYAS Q   P  HSL PHERQELDNFLAQY+IVLCS
Sbjct: 61  RVATPIDQLPLIDAQLSQSHHLLRSYASHQHQQP--HSLPPHERQELDNFLAQYLIVLCS 120

Query: 121 FKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSG 180
           FKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDED++ MDFSLDQSG
Sbjct: 121 FKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDELQMDFSLDQSG 180

Query: 181 TDAHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQS 240
            D HDMMGFGPLLPTESERSLMERVRQELKIELKQ  + +                    
Sbjct: 181 GDGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSR-------------------- 240

Query: 241 TIIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQIN 300
             IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQIN
Sbjct: 241 --IEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQIN 300

Query: 301 NWFINQRKRNWHSNSQSVTSLKSKRKR 324
           NWFINQRKRNWHSNSQSVTSLKSKRKR
Sbjct: 301 NWFINQRKRNWHSNSQSVTSLKSKRKR 300

[Close]

BLAST of CaUC01G003280 vs. TAIR 10
Match: AT1G62990.1 (KNOTTED-like homeobox of Arabidopsis thaliana 7 )

HSP 1 Score: 429.5 bits (1103), Expect = 2.4e-120
Identity = 233/325 (71.69%), Postives = 257/325 (79.08%), Query Frame = 0


Query: 1   MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQE  LGMM    G+T    GD +V  +   N QLK EIATHP+YEQLL+AHVACLRVAT
Sbjct: 1   MQEAALGMM----GATVGGDGDTAVVAE--QNRQLKGEIATHPMYEQLLAAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120
           PIDQLP+I+AQLSQSHH+LRSYAS+   +        H+R ELDNFLAQY++VLCSFKEQ
Sbjct: 61  PIDQLPIIEAQLSQSHHLLRSYASTAVGY-------HHDRHELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTD-- 180
           LQQHVRVHAVEAVMACREIEN L +LTG +LGEG+GATMS+DEDD+PMDFS D SG D  
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFS 180

Query: 181 -AHDMMGFGPLLPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQST 240
             HDM GFGPLLPTESERSLMERVRQELK+ELKQ  + +                     
Sbjct: 181 GGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSR--------------------- 240

Query: 241 IIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN 300
            IEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINN
Sbjct: 241 -IEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINN 290

Query: 301 WFINQRKRNWHSNSQSVTSLKSKRK 323
           WFINQRKRNWH+NS S+TSLKSKRK
Sbjct: 301 WFINQRKRNWHNNSHSLTSLKSKRK 290

[Close]

BLAST of CaUC01G003280 vs. TAIR 10
Match: AT5G25220.2 (KNOTTED1-like homeobox gene 3 )

HSP 1 Score: 353.6 bits (906), Expect = 1.7e-97
Identity = 198/315 (62.86%), Postives = 232/315 (73.65%), Query Frame = 0


Query: 13  GGSTGALSGDVSVSGDGV---HNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMID 72
           GG      G  + + DGV    N++ KAEI +HPLYEQLLSAHVACLR+ATP+DQLP ID
Sbjct: 134 GGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 193

Query: 73  AQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHA 132
           AQL+QS HV+  Y++       A  L   ++ ELD F+  Y+++LCSFKEQLQQHVRVHA
Sbjct: 194 AQLAQSQHVVAKYSAL---GAAAQGLVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHA 253

Query: 133 VEAVMACREIENTLQALTGVSLGEGTGATMSDDEDD-IPMDFSLDQSGTDAHDMMGFGPL 192
           +EAVMAC EIE +LQ+LTGVS GEG GATMSDDED+ +  D ++   G    D++GFGPL
Sbjct: 254 MEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPL 313

Query: 193 LPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILR 252
           +PTESERSLMERVRQELK ELKQ  +EK                      I D+REEILR
Sbjct: 314 IPTESERSLMERVRQELKHELKQGYKEK----------------------IVDIREEILR 373

Query: 253 KRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 312
           KRRAGKLPGDTT+VLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH
Sbjct: 374 KRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 419

Query: 313 SNSQSVTSLKSKRKR 324
           SN  S T LK+KRKR
Sbjct: 434 SNPSSSTVLKNKRKR 419

[Close]

BLAST of CaUC01G003280 vs. TAIR 10
Match: AT5G25220.1 (KNOTTED1-like homeobox gene 3 )

HSP 1 Score: 352.4 bits (903), Expect = 3.7e-97
Identity = 197/314 (62.74%), Postives = 231/314 (73.57%), Query Frame = 0


Query: 13  GGSTGALSGDVSVSGDGV---HNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMID 72
           GG      G  + + DGV    N++ KAEI +HPLYEQLLSAHVACLR+ATP+DQLP ID
Sbjct: 134 GGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 193

Query: 73  AQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHA 132
           AQL+QS HV+  Y++       A  L   ++ ELD F+  Y+++LCSFKEQLQQHVRVHA
Sbjct: 194 AQLAQSQHVVAKYSAL---GAAAQGLVGDDK-ELDQFMTHYVLLLCSFKEQLQQHVRVHA 253

Query: 133 VEAVMACREIENTLQALTGVSLGEGTGATMSDDEDD-IPMDFSLDQSGTDAHDMMGFGPL 192
           +EAVMAC EIE +LQ+LTGVS GEG GATMSDDED+ +  D ++   G    D++GFGPL
Sbjct: 254 MEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPL 313

Query: 193 LPTESERSLMERVRQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILR 252
           +PTESERSLMERVRQELK ELKQ  +EK                      I D+REEILR
Sbjct: 314 IPTESERSLMERVRQELKHELKQGYKEK----------------------IVDIREEILR 373

Query: 253 KRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH 312
           KRRAGKLPGDTT+VLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH
Sbjct: 374 KRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 418

Query: 313 SNSQSVTSLKSKRK 323
           SN  S T LK+KRK
Sbjct: 434 SNPSSSTVLKNKRK 418

[Close]

BLAST of CaUC01G003280 vs. TAIR 10
Match: AT5G11060.1 (KNOTTED1-like homeobox gene 4 )

HSP 1 Score: 347.4 bits (890), Expect = 1.2e-95
Identity = 189/297 (63.64%), Postives = 224/297 (75.42%), Query Frame = 0


Query: 32  NSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPN 91
           N++ KAEI +HPLYEQLLSAHVACLR+ATP+DQLP IDAQL+QS +V+  Y++ +     
Sbjct: 120 NARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEA---- 179

Query: 92  AHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSL 151
           A  L   + +ELD+F+  Y+++LCSFKEQLQQHVRVHA+EAVMAC EIE +LQ+ TGVS 
Sbjct: 180 AQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSP 239

Query: 152 GEGTGATMSDDEDDIPMDFSLDQSGTDAH------DMMGFGPLLPTESERSLMERVRQEL 211
           GEGTGATMS+DED        +Q  +DAH      D +GFGPL+PTESERSLMERVRQEL
Sbjct: 240 GEGTGATMSEDED--------EQVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQEL 299

Query: 212 KIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILRKRRAGKLPGDTTTVLKN 271
           K ELKQ  +EK                      I D+REEILRKRRAGKLPGDTT+VLK+
Sbjct: 300 KHELKQGYKEK----------------------IVDIREEILRKRRAGKLPGDTTSVLKS 359

Query: 272 WWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 323
           WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T  K+KR+
Sbjct: 360 WWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVSKNKRR 382

[Close]

BLAST of CaUC01G003280 vs. TAIR 10
Match: AT4G32040.1 (KNOTTED1-like homeobox gene 5 )

HSP 1 Score: 320.1 bits (819), Expect = 2.1e-87
Identity = 176/303 (58.09%), Postives = 217/303 (71.62%), Query Frame = 0


Query: 25  VSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYAS 84
           V G+   ++  KA I  HP+YEQLL+AHVACLRVATP+DQ+P IDAQLSQ H V   Y++
Sbjct: 108 VGGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYST 167

Query: 85  SQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQ 144
                         + +ELD+F++ Y+++LCSFKEQLQ HV VHA+EA+ AC EIE +LQ
Sbjct: 168 LG---------VVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQ 227

Query: 145 ALTGVSLGEGTGATMSDDEDD--IPMDFSLDQSGTDAHD-MMGFGPLLPTESERSLMERV 204
           +LTGVS  E  G TMSDDEDD  +  + ++     D  D +MGFGPL+PTE ERSLMERV
Sbjct: 228 SLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERV 287

Query: 205 RQELKIELKQIKREKQRTNLYEQICGVEDEPDLQSTIIEDVREEILRKRRAGKLPGDTTT 264
           ++ELK ELKQ  +EK                      I D+REEI+RKRRAGKLPGDTT+
Sbjct: 288 KKELKHELKQGFKEK----------------------IVDIREEIMRKRRAGKLPGDTTS 347

Query: 265 VLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSL-KSK 324
           VLK WW+ HSKWPYPTE+DKAKLV+ETGLQLKQINNWFINQRKRNW+SNS + ++L K+K
Sbjct: 348 VLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNSSTSSTLTKNK 379

The following BLAST results are available for this feature:

BLAST of CaUC01G003280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143939.1	4.1e-154	89.47	homeobox protein knotted-1-like 7 [Cucumis sativus] >KGN50155.1 hypothetical pro...	[more]
XP_038875957.1	1.2e-153	88.85	homeobox protein knotted-1-like 7 [Benincasa hispida]	[more]
XP_008437194.1	2.9e-152	89.16	PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo]	[more]
KAG6606131.1	3.6e-142	84.05	Homeobox protein knotted-1-like 7, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958449.1	1.4e-141	83.54	homeobox protein knotted-1-like 7 [Cucurbita moschata]	[more]

BLAST of CaUC01G003280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPQ8	3.4e-119	71.69	Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 ...	[more]
P46606	1.3e-118	71.08	Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1	[more]
Q94LW3	1.1e-104	63.96	Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HO...	[more]
O04136	6.2e-97	65.53	Homeobox protein knotted-1-like 3 OS=Malus domestica OX=3750 PE=2 SV=1	[more]
P48000	5.3e-96	62.74	Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana OX=3702 GN=KNAT3 PE=1 ...	[more]

BLAST of CaUC01G003280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKD3	2.0e-154	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1	[more]
A0A1S3ATE3	1.4e-152	89.16	homeobox protein knotted-1-like 7 OS=Cucumis melo OX=3656 GN=LOC103482695 PE=3 S...	[more]
A0A6J1H546	6.6e-142	83.54	homeobox protein knotted-1-like 7 OS=Cucurbita moschata OX=3662 GN=LOC111459669 ...	[more]
A0A6J1K9A9	1.8e-139	82.87	homeobox protein knotted-1-like 7 OS=Cucurbita maxima OX=3661 GN=LOC111491278 PE...	[more]
A0A6P3YVU8	7.1e-136	81.96	homeobox protein knotted-1-like 7 OS=Ziziphus jujuba OX=326968 GN=LOC107405822 P...	[more]

BLAST of CaUC01G003280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62990.1	2.4e-120	71.69	KNOTTED-like homeobox of Arabidopsis thaliana 7	[more]
AT5G25220.2	1.7e-97	62.86	KNOTTED1-like homeobox gene 3	[more]
AT5G25220.1	3.7e-97	62.74	KNOTTED1-like homeobox gene 3	[more]
AT5G11060.1	1.2e-95	63.64	KNOTTED1-like homeobox gene 4	[more]
AT4G32040.1	2.1e-87	58.09	KNOTTED1-like homeobox gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 195..222
None	No IPR available	GENE3D	1.10.10.60		coord: 245..319 e-value: 2.3E-25 score: 89.9
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 2..323
None	No IPR available	PANTHER	PTHR11850:SF315	HOMEOBOX PROTEIN KNOTTED-1-LIKE 7	coord: 2..323
IPR005540	KNOX1	SMART	SM01255	KNOX1_2	coord: 33..77 e-value: 2.5E-19 score: 80.2
IPR005540	KNOX1	PFAM	PF03790	KNOX1	coord: 35..76 e-value: 2.0E-18 score: 65.8
IPR005541	KNOX2	SMART	SM01256	KNOX2_2	coord: 93..148 e-value: 1.9E-24 score: 97.2
IPR005541	KNOX2	PFAM	PF03791	KNOX2	coord: 97..147 e-value: 8.3E-18 score: 63.6
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 248..313 e-value: 1.4E-10 score: 51.2
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 246..309 score: 11.677235
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 249..310 e-value: 3.08307E-12 score: 58.7941
IPR008422	Homeobox KN domain	PFAM	PF05920	Homeobox_KN	coord: 266..305 e-value: 1.7E-17 score: 63.0
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 248..313

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC01G003280.1	CaUC01G003280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010192	mucilage biosynthetic process
biological_process	GO:0080001	mucilage extrusion from seed coat
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:2000652	regulation of secondary cell wall biogenesis
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0010214	seed coat development
biological_process	GO:0080112	seed growth
biological_process	GO:0010089	xylem development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding