CaUC01G000780 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G000780
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 563908 .. 566481 (-)
RNA-Seq ExpressionCaUC01G000780
SyntenyCaUC01G000780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATCACATGCTTTGGATTCCAAACAGATAATAATTTCTTCCTATGTATAAAATGAGCTGAAAAAAAAAAAACCCTAATCTTAATTAAATATCACCAAATCTAAAGATCATAATTTTGGAAGTGAGTTAAAGGGTTTGATTGCAATAAATTGGAATGACCCATTTTGAATAATTTTACCCAAAATGCCATCTCCCTCTTTTTGTCAATATGTCTCCACAATCTCCACCAAAAATGGGCCTCATAGAAACAGCATCAGCCATCAATGGCGGCAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTCCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATGTGGGTTTTCTTTTTCTCCTTCCATTTTTCTCTGTATGTGATGTTAACTGCTCTCTTTTCACTAGTAAACAAAAATCCTTTGCTGCTGAGTTTTCGTTTTCGTTTCTCTTTTGTCAGTTTCATCAATCAATCAATGCAATCGACTGAGAATGCAATTTTCTCTTTGTTTCGAGTTATGTTGATGGAGATTGCCATTTTTGGATCTTGAGAAAGCTTCTGGGAAGTTTGAAGTAAGAAGTAAATCTATAGCTAGGTTTCTTCTGTTTATATCCTTGATTGTTTGACTACTGAGAAAATGAAGAGTATAATCTTGATTTCTAGTCATTTAGCTTTTGAGGTTATTCCTACTGAATGATATTGATTCACTTCAATTTTCTTAACACTTTGCTTCACTTGTGCATCTTGAGCATGCTTTGCTGAAGTCTGGTCTATTGTTAACCTTTCTGTTTCAACTCCTTTGTTTCTCCTTCTTTCTGTTTCTGAACTTGTTTGGCTTCTGAGAAAATGGGAAGTAAACTTTTGATTTCCATTTCATAACCATTGGGTTTTTGAGAATTGTGTTTGTTTTTTCACCATTTCTTTTATTCATTTTTGCATCTTGAGCTAGTTTTGTTGAAGTTTGTGAGGTTGTTTGTGAGAAGTAAATCCTCTACTACTCATTCTGTTTCAGCTCCTTTTTTCCCACTGTTGTTTCTGAACTTGTTTGGCTACTGAGAAAATGAGAAATAAAATCTTAATGTGTAGTCATTTGGGCCCGTTTAATAGTTATTAGGTTTGGTTTGTAAAAGTTAGTTTGTAAATACTAGTTCCACCTATTGATTTTTCTTGCTTTTGTTGTCTACATTTTAGAAGTATTTTCAAACTCCAAGCTAAGTTTTGAAAACTCAAACGGATAGTTTTTAAATTGTATTTTTGCCTTTAGAATCTGATTAGAAATTCGAATATTTACTGTAAACTTTACTTGGAGTTGTGAAAAAATAAGCACAATTTTCAAAAACAAAAAAGGCCTTAGTTTTTTTTGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGACTTTAGAAGTAGTAAATCCAATGCAATTTTCTATTTCAACTTTTTTATTTCATTTCCTATCAACACTTTGTGTTTCTTTGTTTCGTTGCGTACTTTCTTAATTAAACTTTTTTCGACAACTTCTTTCTATACAAAGCGAAAAACATACTGTAGAATTTATTTTAAAGCCAACATAGATTTGAAAAATGGAAAACTAAAAATGGAATTGTTATCGAATGAGACAATTTTTTGTTCTTCTGATTGAACCATCGATATGGATTCACTTTGGTTTTATATATATATTCTGAGTCTCTGTAGATTTAGATGGCTATTTTTGCATCTTAAGCATGTTTTTCTCAGGCCTGGAAGACTAGCAGTTTATAGTAAATCTATTGCTAATCTTTCCTTTTCAATTCTTTCTCTTCTCCCATCTGTTTCTGTCCTTTTTGGCTATTGGTAAAATGAGAAGTAAAACCTTAATTCATTGCAGTATTTTTATGTCACCACGTTTTGGTTTGATTTGTTCTTTTGCAGCTATTTTCTCTTAAACTGTCATTGCGGAAATCATGAAGATGCAACCAGCAATTGA

mRNA sequence

TGATCACATGCTTTGGATTCCAAACAGATAATAATTTCTTCCTATGTATAAAATGAGCTGAAAAAAAAAAAACCCTAATCTTAATTAAATATCACCAAATCTAAAGATCATAATTTTGGAAGTGAGTTAAAGGGTTTGATTGCAATAAATTGGAATGACCCATTTTGAATAATTTTACCCAAAATGCCATCTCCCTCTTTTTGTCAATATGTCTCCACAATCTCCACCAAAAATGGGCCTCATAGAAACAGCATCAGCCATCAATGGCGGCAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTCCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATGCCTGGAAGACTAGCAGTTTATAGTAAATCTATTGCTAATCTTTCCTTTTCAATTCTTTCTCTTCTCCCATCTGTTTCTGTCCTTTTTGGCTATTGCTATTTTCTCTTAAACTGTCATTGCGGAAATCATGAAGATGCAACCAGCAATTGA

Coding sequence (CDS)

ATGTCTCCACAATCTCCACCAAAAATGGGCCTCATAGAAACAGCATCAGCCATCAATGGCGGCAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTCCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATGCCTGGAAGACTAGCAGTTTATAGTAAATCTATTGCTAATCTTTCCTTTTCAATTCTTTCTCTTCTCCCATCTGTTTCTGTCCTTTTTGGCTATTGCTATTTTCTCTTAAACTGTCATTGCGGAAATCATGAAGATGCAACCAGCAATTGA

Protein sequence

MSPQSPPKMGLIETASAINGGNSTIKIVIGETPFISHGPSCSSGVFDHFLMPGRLAVYSKSIANLSFSILSLLPSVSVLFGYCYFLLNCHCGNHEDATSN
Homology
[Close]
BLAST of CaUC01G000780 vs. NCBI nr
Match: KGN49889.1 (hypothetical protein Csa_000104 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 9  MGLIETASAINGGNSTIKIVIGETPFISHGP-SCSSGVFDHFLM 52
          MGL ETASAINGGNSTIKIVI ETPFISHGP SCSSGVFDHFL+
Sbjct: 1  MGLKETASAINGGNSTIKIVIEETPFISHGPSSCSSGVFDHFLI 44

[Close]
BLAST of CaUC01G000780 vs. ExPASy TrEMBL
Match: A0A0A0KLZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139670 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 9  MGLIETASAINGGNSTIKIVIGETPFISHGP-SCSSGVFDHFLM 52
          MGL ETASAINGGNSTIKIVI ETPFISHGP SCSSGVFDHFL+
Sbjct: 1  MGLKETASAINGGNSTIKIVIEETPFISHGPSSCSSGVFDHFLI 44

The following BLAST results are available for this feature:
BLAST of CaUC01G000780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49889.13.5e-1190.91hypothetical protein Csa_000104 [Cucumis sativus][more]
BLAST of CaUC01G000780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G000780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLZ81.7e-1190.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139670 PE=4 SV=1[more]
BLAST of CaUC01G000780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G000780.1CaUC01G000780.1mRNA