CaUC01G000590 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G000590
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPantothenate synthetase
LocationCiama_Chr01: 433653 .. 436110 (+)
RNA-Seq ExpressionCaUC01G000590
SyntenyCaUC01G000590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGTTTGTTATTCTTCGGTGAATGGATGATATTGTGGAACTCTCCTACTGAGATTCAAAGCTATAACATAAATTTGTGTGTGCTTCCTTTCTCTCCATTATTATGCTGCATGTCTTTTGCTTTGCCTAGCTGATGAACTTGAGAACTTTTAGAAATGACTAGCCAATGCTATGATTGATACTGTGGAATTTCCTTGGGATTATGGAAAAATGAGAGGTAGAATTTTCTACTACTTGGGAATTTAGGCAAGGGAATCCATTCTCTTCATTCATGTGGTCAATATCATGGATATATTATTGAAGCAAGGTTTTGAGTTAAACATCCTTCTTGGCCTTGGAACAGTTACATCGAATCATTTACCATCCCCAACTTTTGGAGACTATGATGAGAAAGAACTTGAAAATACCTTGTCTGCTGCAAATTTACTCATACATTGTGATGCTGGTTGATTGACAGTTTGTCTGTTGCCAATTGGGCTAAAGAAGAATATACAGTGATATGTTGTGGGCAACCTCCAAAAGTTCAATGGAGAAGTGCTGTAGAACTATGCAGGTGAATGAATGAATACCTTTCCTTCAAATGGGATATTTGGCCGGTCGTGACTAATAATGAAAAGTGAAAAAGTTTGAGATCATAATTTCTAGTTCTAAAGTTTCCCCTTTGAGTTTTTTGCTTAACTTTTGTGTGAATGATTATAAGTATGAAATTTTAATTGAGATCGGTAGTATCTACCGATTATCACTAAATTACTTTGACTAATTAAAACAATGTTCAATTGACTTGTCAATTTTTTTTAATTATTATTTTAATATTTTATGAATGTAACAGCAGTGAAAATAAATGTACTGGTGAAATCCAACAACTGGATATATTCAAGAGTTAGAAAACTAGTCAATTTCGGATAATTTATTCGCTATATTTTTTCAATATCCATTTTTTTTTTTACCCTTGAGGGAAAAAAATCAATCAATTTTCACCCCTATGTGGTTAAATTCTTAAAAAACAGAATTTGTATTATGAAAGAATTCCACTAAACTTTATATGAATATCAAAGTAGGAAAATTATTTTGTCTGAGAGCATGTGGGCTTCTACACAAATAATTCCAAAGTTTTTTTTTTCTTTTTTTTTTCTTTTTAAATTGAAAAATCATATATTTGATAAAAGGGATATTCCCCCCTTAAAAGTTGGGGAAGAGAAGTTGGTAGTCCTTGAAACTGTTGATGTAACTTCAGGTACAAGATATCCAACTTGTTGGACAATTGAACTTCATCTATTTGATTATCAAAGAAAGTCTGCAGAGCAAGAACAAAAGTTGCAGGACATTTACAGTGTGAATGGAAGGCAAACAATTGACCAAAATCTAACTGAAACTCGAAAGTCTACTGATGACCTTCTAAAAGAAAATGACTTCATAATAATAACCACCTACAAGACATGAACCATTTTACACATATATTCACAAATCCTGCTCTACGAACTCATAACGAACTCACCAGCATGAGATCGGCAGATAGGCATCCATCAGTGATCCAGAAAAACTTTTAGTTTAGGCAATGGCCATTGCTTGGATCCTGCCTAATTGACCTAAGGTTGAAATCTTTTCCATCAATCGAAGCTATTAATGATACAATGGTGTTTATGCAAAACACCATGGCAGTAACATTCTCTCATTCCAATATTATGAAACAAGAACCAATGCATAGAATAGACATACATTTTTTGTATACAAGGAATACCTTTGTTCCATCAACTATTCTCTTCAGAGGTAAAATCAGGTTCTGCTGGTTTCTGAAGCAACATCGGTGGTATTCTCTCTGGAATCCTGGCCTTCCGTGAGCTTGTCCGTCGAATCGTTCTAAGGATGTTTGCTGCAAATCTGGATGCATAGATGGTGGCACCTAAACTTGGAGAACTCCCACCTGTCTTGGCCAATGCATCCTTTAACCTGTTCTCTTCTTCCAAGAGGGTCTGCTCATGCTTCTTTCTGCGGTATCGACGCCATGCTGCTTGAATAAAACATGCTGCCCATGTTCTCCATTGCTGCGAATAAAACCTGAAAGTGTGCCGCAGCTGCTTGCTGTGAAGCCTTCGGAACTGTGAGGCTACAAACTTTAAGTCATCAGCCTTCAAAGCAAATGCTTCAACTTCTGAAAGTGTTCGAACAGTTCTCGTCGAAATTGGCAGATTGGATGAGGAGTGTGGATCCAGAGCCCATGTCAGTAACTCTTCTCCACAGAAATCACCTGCCTTGAGGTGTTCAGAATTAAAGAAACCAGTTCTTCCCCCATTCGTAGTTACAGACAATAACTTGCCTCGCATAATAAAAATCATCTCGTCTACCGGGTCTCCTTCCCTAACAATGAAACTTTCCTCCGTGTATAGTACTGGCTTGAGACGGTCACACATTGCATCCAACAATTGTTCATCCATTTTTTCAAACATGGGTACCTGA

mRNA sequence

ATGACTGCCTTCAAAGCAAATGCTTCAACTTCTGAAAGTGTTCGAACAGTTCTCGTCGAAATTGGCAGATTGGATGAGGAGTGTGGATCCAGAGCCCATGTCAGTAACTCTTCTCCACAGAAATCACCTGCCTTGAGGTGTTCAGAATTAAAGAAACCAGTTCTTCCCCCATTCGTAGTTACAGACAATAACTTGCCTCGCATAATAAAAATCATCTCGTCTACCGGGTCTCCTTCCCTAACAATGAAACTTTCCTCCGTGTATAGTACTGGCTTGAGACGGTCACACATTGCATCCAACAATTGTTCATCCATTTTTTCAAACATGGGTACCTGA

Coding sequence (CDS)

ATGACTGCCTTCAAAGCAAATGCTTCAACTTCTGAAAGTGTTCGAACAGTTCTCGTCGAAATTGGCAGATTGGATGAGGAGTGTGGATCCAGAGCCCATGTCAGTAACTCTTCTCCACAGAAATCACCTGCCTTGAGGTGTTCAGAATTAAAGAAACCAGTTCTTCCCCCATTCGTAGTTACAGACAATAACTTGCCTCGCATAATAAAAATCATCTCGTCTACCGGGTCTCCTTCCCTAACAATGAAACTTTCCTCCGTGTATAGTACTGGCTTGAGACGGTCACACATTGCATCCAACAATTGTTCATCCATTTTTTCAAACATGGGTACCTGA

Protein sequence

MTAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVTDNNLPRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIASNNCSSIFSNMGT
Homology
[Close]
BLAST of CaUC01G000590 vs. NCBI nr
Match: CAA2632351.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 2   TAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVT 61
           +A +A ASTS    TVLVE GRL++E GSRA V +SSPQKSP LR S LKKPVLPP VV 
Sbjct: 24  SATRAKASTSVRAFTVLVEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVA 83

Query: 62  DNNLPRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIAS 100
            +++PR++  ISSTGSPS TM+L  VY TG   SHIAS
Sbjct: 84  LSSVPRMMNSISSTGSPSRTMRLDPVYRTGFSLSHIAS 121

[Close]
BLAST of CaUC01G000590 vs. NCBI nr
Match: CAA7408668.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 62/98 (63.27%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 2   TAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVT 61
           +A +A ASTS    TVLVE GRL++E GSRA V +SSPQKSP LR S LKKPVLPP VV 
Sbjct: 24  SATRAKASTSVRAFTVLVEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVA 83

Query: 62  DNNLPRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIAS 100
            +++PR++  ISSTGSPS TM L  VY TG   SHIAS
Sbjct: 84  LSSVPRMMNSISSTGSPSRTMMLDPVYRTGFSLSHIAS 121

[Close]
BLAST of CaUC01G000590 vs. NCBI nr
Match: TVU33294.1 (hypothetical protein EJB05_25104 [Eragrostis curvula])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 0 

Query: 6   ANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVTDNNL 65
           + A   +SV  VLVE GR++ E GS AHV +SSPQKSPA R  ELKKPV PPFVV  +  
Sbjct: 26  SRAQVRDSVFAVLVEQGRVEAELGSSAHVRSSSPQKSPASRTLELKKPVCPPFVVILSRD 85

Query: 66  PRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIASNN 102
           P ++K IS TGSPS TM+L SVY+ GLRRSH+AS +
Sbjct: 86  PLMMKSISFTGSPSRTMQLPSVYNMGLRRSHMASKS 121

[Close]
BLAST of CaUC01G000590 vs. NCBI nr
Match: KAF3782622.1 (hypothetical protein EJ110_NYTH33802 [Nymphaea thermarum])

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-18
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 0 

Query: 2   TAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVT 61
           +A  A ASTS S  TVLVE GRL  + GS+AH S+SSPQKSP  +  ELKKPVLPP VV 
Sbjct: 27  SARNAKASTSLSALTVLVEDGRLPVDLGSKAHESSSSPQKSPGFKAVELKKPVLPPLVVE 86

Query: 62  DNNLPRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIASNN 102
            ++ PRI+  IS TGSPS TM + SV     RRSH+ASN+
Sbjct: 87  LSSCPRIMNSISVTGSPSRTMYVPSVLKLETRRSHMASNS 126

[Close]
BLAST of CaUC01G000590 vs. NCBI nr
Match: RDX95284.1 (hypothetical protein CR513_22217, partial [Mucuna pruriens])

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-18
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 2   TAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVT 61
           +  +A ASTS+ V TVLVE+GR +EE GSRAHV +SSPQKSPA    ELKKPVLPPFVV 
Sbjct: 130 SGMRAKASTSDIVSTVLVEMGRFEEEVGSRAHVRSSSPQKSPAFSSDELKKPVLPPFVVA 189

Query: 62  DNNLPRIIKIISSTGSPSLTM 83
             + PR++  ISSTGSPS TM
Sbjct: 190 VASFPRMMNSISSTGSPSRTM 210

[Close]
BLAST of CaUC01G000590 vs. ExPASy TrEMBL
Match: A0A7I8JP70 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15017973 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.8e-21
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 2   TAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVT 61
           +A +A ASTS    TVLVE GRL++E GSRA V +SSPQKSP LR S LKKPVLPP VV 
Sbjct: 24  SATRAKASTSVRAFTVLVEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVA 83

Query: 62  DNNLPRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIAS 100
            +++PR++  ISSTGSPS TM+L  VY TG   SHIAS
Sbjct: 84  LSSVPRMMNSISSTGSPSRTMRLDPVYRTGFSLSHIAS 121

[Close]
BLAST of CaUC01G000590 vs. ExPASy TrEMBL
Match: A0A7I8LH77 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019346 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 62/98 (63.27%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 2   TAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVT 61
           +A +A ASTS    TVLVE GRL++E GSRA V +SSPQKSP LR S LKKPVLPP VV 
Sbjct: 24  SATRAKASTSVRAFTVLVEEGRLEDELGSRAQVRSSSPQKSPPLRKSALKKPVLPPLVVA 83

Query: 62  DNNLPRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIAS 100
            +++PR++  ISSTGSPS TM L  VY TG   SHIAS
Sbjct: 84  LSSVPRMMNSISSTGSPSRTMMLDPVYRTGFSLSHIAS 121

[Close]
BLAST of CaUC01G000590 vs. ExPASy TrEMBL
Match: A0A3Q7H2P7 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-20
Identity = 64/107 (59.81%), Postives = 75/107 (70.09%), Query Frame = 0 

Query: 5   KANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVTDNN 64
           KA ASTS    TV VE GRL+ + GS A V +SSPQKS +     LKKP+LPP VVT + 
Sbjct: 10  KAKASTSVRAFTVRVEDGRLEPDFGSSAQVRSSSPQKSLSFNKLRLKKPLLPPSVVTLSR 69

Query: 65  LPRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIASNNCSSIFSNMGT 112
            PR++K ISSTGSPS TM + S+Y  G RRS IAS+N SSIFSN GT
Sbjct: 70  RPRMMKSISSTGSPSRTMCVFSIYKHGFRRSQIASSNLSSIFSNRGT 116

[Close]
BLAST of CaUC01G000590 vs. ExPASy TrEMBL
Match: A0A5J9VCX9 (Uncharacterized protein OS=Eragrostis curvula OX=38414 GN=EJB05_25104 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 0 

Query: 6   ANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVTDNNL 65
           + A   +SV  VLVE GR++ E GS AHV +SSPQKSPA R  ELKKPV PPFVV  +  
Sbjct: 26  SRAQVRDSVFAVLVEQGRVEAELGSSAHVRSSSPQKSPASRTLELKKPVCPPFVVILSRD 85

Query: 66  PRIIKIISSTGSPSLTMKLSSVYSTGLRRSHIASNN 102
           P ++K IS TGSPS TM+L SVY+ GLRRSH+AS +
Sbjct: 86  PLMMKSISFTGSPSRTMQLPSVYNMGLRRSHMASKS 121

[Close]
BLAST of CaUC01G000590 vs. ExPASy TrEMBL
Match: A0A371GXL3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_22217 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-18
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 2   TAFKANASTSESVRTVLVEIGRLDEECGSRAHVSNSSPQKSPALRCSELKKPVLPPFVVT 61
           +  +A ASTS+ V TVLVE+GR +EE GSRAHV +SSPQKSPA    ELKKPVLPPFVV 
Sbjct: 130 SGMRAKASTSDIVSTVLVEMGRFEEEVGSRAHVRSSSPQKSPAFSSDELKKPVLPPFVVA 189

Query: 62  DNNLPRIIKIISSTGSPSLTM 83
             + PR++  ISSTGSPS TM
Sbjct: 190 VASFPRMMNSISSTGSPSRTM 210

The following BLAST results are available for this feature:
BLAST of CaUC01G000590 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA2632351.11.2e-2063.27unnamed protein product [Spirodela intermedia][more]
CAA7408668.12.7e-2063.27unnamed protein product [Spirodela intermedia][more]
TVU33294.11.5e-1860.42hypothetical protein EJB05_25104 [Eragrostis curvula][more]
KAF3782622.14.3e-1859.00hypothetical protein EJ110_NYTH33802 [Nymphaea thermarum][more]
RDX95284.17.3e-1865.43hypothetical protein CR513_22217, partial [Mucuna pruriens][more]
BLAST of CaUC01G000590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G000590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7I8JP705.8e-2163.27Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15017973 PE=4 SV... [more]
A0A7I8LH771.3e-2063.27Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019346 PE=4 SV... [more]
A0A3Q7H2P72.9e-2059.81Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
A0A5J9VCX97.1e-1960.42Uncharacterized protein OS=Eragrostis curvula OX=38414 GN=EJB05_25104 PE=4 SV=1[more]
A0A371GXL33.5e-1865.43Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_22217 P... [more]
BLAST of CaUC01G000590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G000590.1CaUC01G000590.1mRNA