CaUC01G000550 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G000550
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 410688 .. 413727 (+)
RNA-Seq ExpressionCaUC01G000550
SyntenyCaUC01G000550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGGTTTGATTGGGTTAACTCGTATATCAAATGTCCGAGTTGTAATTTAATTGGACTAGAACGTGACGTGATCTGGTTGGATTAACTCATGTCATCGTGCAAACATGACACAATTTGATTGAATTAACTTATATCGTTAGACAAATATGTTGAATTTTAATTGGACTAGTTATTGACATGACACAATTTGATTGGGTTAAACTTAAATGGTCATAAAATAAATATGTTGCATTGTTTGGTTTCTCAGTTGCAAGGAATTGATTTCTCCAACTGGTCATACAAATAAACATCCATCAATACAATCGTTATTGAACAAACAATTATTTTCTTTAACAAATAAATGCCTAAATGCTCACATTCTTTTAACGACCTCAAAAGAAATTATAATTTGTTTGGCCTTAGAAGTATTTTAGCCACATAAATACCCATAAAACAACTGGATTCTTTTGAAACAAATCAATCGCGGACTCATAACATCCAGTAGCTACATTAACTATTAAGAACAAAAGTTTAGTATGTCACGTTCAAAACTAAGATAATAAACTATAATATTTAAATCCCATCAAAATGTTATAAAAACTGGATAAAAAGCTTAAGAAAACCAAGTTTTCATCATATTGTTAAGACCACCATGTATTGAACTCATGACCTCTTAACCATTTAATCGAGTCTATGTCTCCTTGTTTACTACTAAGTCAATCCATGATGATTTACTTTTCACTATGACTCTTTATCCCAAACACCTTCTAAGGCTGAGGAGTTGGGAAGCATGGAGTTCAGAACTTCACTGCTTGTTTGACCCAAGAAGTTTGTGAATCTCACCACGAGAAAAACATCAATTTTATGTTTAATTAACCATGTGATTTTCAAAAGTTAACACCTCTCTAGACTTAATAAGAAGTGGAGTTCATAACTTTTTACTTCCCAATTCCTTGACCCAAATACCCTTAAGTGAGTGATTCACTCTAGCATCTCGACACTCAGGTTTTCTTGCTACTCGCATCTCAACGGTATCTACTCGGCCCTATTGGCTTGGAAATTACAATGCTTTCAATTGACTTGTGCACCAAGCTACTTGTTTCTGTATGTAGTCACCCCAATTTGATGGTTTTCTTTTATCCAAGTGAAGAAATTGAAATAATCGCCGGTGACCGTGATAGGCGTGCGAACACCAAATCTAGTGAATCGCGTCCGTTGATTTTTGATCGACGAACCACATTGGTTGGTTATTTTCTCTCGTGAAAAGCAAAATTAGAACTCAAAAGAATAATGGATAAATAAGATGGAATATTCCTACAAATTTTGGTTTTGAAATGCCAACATAATTTTTGTCGAGAAAATTCGTCAAAATGACAGTGAAATTGGTCTTGGCAATTATAACAATTCCACGGATATCATTTCAAATTTTACGTGGAAATTGATTTCATGTATTTTTAATTGGCATTTTATATTCTTCTTCGAAATTGTTTTTTTTTTTTTTTTCTTTTTTCTTTTTCTTTTTCTTTTTCTTTTAATAAGTTAAAAAACTAAACAATGAATTGGTAACATTTTAAAAGCACATATTTTAAATCTGATATCCTTTATAGACGGTAAAATTAAAAAAATCATCTATCGACTTATCAACCTGAACATAACTTAATTGATTACTCTCAAACAAAGGTAATAGAATGCATATGAGTCATTTAATCTAACCTTCATCAAATTTGATTGTGAAGTAACTCAATTGAGAACAAGATTTCCAAATCTTGCTTCTAAGATATTCGATCTAAGAGGTAATCTAATTCTTACATTTTTTCTTGATTGACCTAAATTCATATAAGGAAGTGTTAATTTCTTAAATTCAAAAGTTCTTGCTTTAACAAAAGCTTGGATCTTTACAATGAGGACTAGAATTGCCTTATCAACGAGTTTAAATGGTAATTCGAGTGATCCTTGAAAATTTGACATTCCTTCATTCTTATTTTCATCTTCATCCTAGTATTGGTCTACCAAAGTGTCTTTCATTTTTTCATCACCCAATGGGCTACTTTCAAATCCTAGATCCCAATTACTATGACCCTCATTGGTAGCCATTTGATTTCTGCATTTTTAAAATTAAGTCTATTTCCTCTTATGTTACATTTTTCTTAAGTAAAAGAGCTAAGTTGATTTATGCGTTTTTAAAATTAAGTCTATTTCCTCTCCTGTTACATTTTTCTTAAGTAAAAGAGCTAAGTTCTTAGTCAAATTCCAAACACAAAAACACGTTTTTAAAAATACTTTTTTTAGTTTTCAAAACTTAGTTTGGTTTTTGTAATCATTTGTAAAAAATAGATAAGAAACCAAGAAATTTAGAGGTGTAAAGGGTTTTTATAGGCTCAATTTTCAAAAATCAAATTGATACCAAACAAAAAAAACCCAAAACCCTCATTGACACATGAATGGCTTAAGAAAACATTATCAACAAGACCTTACCAGACACAAACAATCACATGGGCAAATACCTGGAAACGCTTCAATTCTGCTACAACTTGTGGAGCTCCAGCCCCAAGCTATTGGTTAAAGACAAGGATTTCTTATAGATTTTTAAGAACATACCAGTTTTCATTTCACATTCCATGAAGGGAGTCATTGATGGATACAATCTGAGGAGGAGACAAGAAAAAAAGCAGAAGACCTCTGCTCGAGGTCTCAACCCGGGGCAGGGGTTTAACAGTCCCATACAAGAAGAGAATCGAAATCGAGATGATTCTGATATCTTTACAGGTGAAAGCAAATGTTTGCAACAAATTTTTAGATCAATGATATTGGCTAACAAGGAAATCGAACCAGATATTGAACAATCGCTATGCTATCCTTCCATGACATCAGATGGAAAAGATCAAAAGCATCCACCCAACTGCATTGTTACAAAAACAAAGCAAATAGAAAAATCATGGGGTTTGAAAAGCTTAAATGCTTTGTGTATGTTTATACATTTAAAGCTGGGATCCACTTATCAGAATAAACATCAGTCCATCATATCAGGGCTAGTGTTTTTGAATTCCTATTTTTAG

mRNA sequence

ATGACACGTCACCCCAATTTGATGGTTTTCTTTTATCCAAGTGAAGAAATTGAAATAATCGCCGGTGACCGTGATAGGCGTGCGAACACCAAATCTAGTGAATCGCGTCCGTTGATTTTTGATCGACGAACCACATTGAACATACCAGTTTTCATTTCACATTCCATGAAGGGAGTCATTGATGGATACAATCTGAGGAGGAGACAAGAAAAAAAGCAGAAGACCTCTGCTCGAGGTCTCAACCCGGGGCAGGGGTTTAACAGTCCCATACAAGAAGAGAATCGAAATCGAGATGATTCTGATATCTTTACAGGTGAAAGCAAATGTTTGCAACAAATTTTTAGATCAATGATATTGGCTAACAAGGAAATCGAACCAGATATTGAACAATCGCTATGCTATCCTTCCATGACATCAGATGGAAAAGATCAAAAGCATCCACCCAACTGCATTGTTACAAAAACAAAGCAAATAGAAAAATCATGGGGTTTGAAAAGCTTAAATGCTTTGTGTATGTTTATACATTTAAAGCTGGGATCCACTTATCAGAATAAACATCAGTCCATCATATCAGGGCTAGTGTTTTTGAATTCCTATTTTTAG

Coding sequence (CDS)

ATGACACGTCACCCCAATTTGATGGTTTTCTTTTATCCAAGTGAAGAAATTGAAATAATCGCCGGTGACCGTGATAGGCGTGCGAACACCAAATCTAGTGAATCGCGTCCGTTGATTTTTGATCGACGAACCACATTGAACATACCAGTTTTCATTTCACATTCCATGAAGGGAGTCATTGATGGATACAATCTGAGGAGGAGACAAGAAAAAAAGCAGAAGACCTCTGCTCGAGGTCTCAACCCGGGGCAGGGGTTTAACAGTCCCATACAAGAAGAGAATCGAAATCGAGATGATTCTGATATCTTTACAGGTGAAAGCAAATGTTTGCAACAAATTTTTAGATCAATGATATTGGCTAACAAGGAAATCGAACCAGATATTGAACAATCGCTATGCTATCCTTCCATGACATCAGATGGAAAAGATCAAAAGCATCCACCCAACTGCATTGTTACAAAAACAAAGCAAATAGAAAAATCATGGGGTTTGAAAAGCTTAAATGCTTTGTGTATGTTTATACATTTAAAGCTGGGATCCACTTATCAGAATAAACATCAGTCCATCATATCAGGGCTAGTGTTTTTGAATTCCTATTTTTAG

Protein sequence

MTRHPNLMVFFYPSEEIEIIAGDRDRRANTKSSESRPLIFDRRTTLNIPVFISHSMKGVIDGYNLRRRQEKKQKTSARGLNPGQGFNSPIQEENRNRDDSDIFTGESKCLQQIFRSMILANKEIEPDIEQSLCYPSMTSDGKDQKHPPNCIVTKTKQIEKSWGLKSLNALCMFIHLKLGSTYQNKHQSIISGLVFLNSYF
Homology
[Close]
BLAST of CaUC01G000550 vs. NCBI nr
Match: KGN49869.1 (hypothetical protein Csa_000070 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-09
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 103 FTGESKCLQQIFRSMILANKEIEPDIEQSLCYPSMTSDGKDQKHPPNCIVTKTKQIEKSW 162
           F   ++   + FR+++LANK+ EPD EQ   YPSMT DGK QKHPPNC+VTKTK+  K  
Sbjct: 68  FQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKTKENRKIM 127

Query: 163 GLK 166
           G +
Sbjct: 128 GFE 130

[Close]
BLAST of CaUC01G000550 vs. ExPASy TrEMBL
Match: A0A0A0KLX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 103 FTGESKCLQQIFRSMILANKEIEPDIEQSLCYPSMTSDGKDQKHPPNCIVTKTKQIEKSW 162
           F   ++   + FR+++LANK+ EPD EQ   YPSMT DGK QKHPPNC+VTKTK+  K  
Sbjct: 68  FQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKTKENRKIM 127

Query: 163 GLK 166
           G +
Sbjct: 128 GFE 130

The following BLAST results are available for this feature:
BLAST of CaUC01G000550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49869.12.2e-0953.97hypothetical protein Csa_000070 [Cucumis sativus][more]
BLAST of CaUC01G000550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G000550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLX71.1e-0953.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1[more]
BLAST of CaUC01G000550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G000550.1CaUC01G000550.1mRNA