CaUC01G000440 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACTACTCACAATCTCTCTCACTCCCTACACTCACATCTATTTACTCATTTCTACCAACCCATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGGGCACTCTACCGTCGCCCACGACGGTGCTCGACGGCCCGGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGGCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTGAGCCCAAGTATTTCCAACTTTTTTTTTTAAAATTTATTTTATATTTATCTTATTATTTATTAATTTTTTTAACATCTTTACATAAATATGTCACTTAAATGCTATTATATTTGTTTTAACTCCACTAACCAAATTTATTTATCCACTTACACATAACTCAATTGGTATCAATTAAACATCTCTTATCCTATTTGTTTGTTGAACTAAATAATAATAATATATAAAATGAAATTTATTTACCAAGTTATTAGATATCTCTGCATATGCCTAAATATATTAATAAAGTAATAATTCAAATGACACAACTTTCTATAAAATGACTTAATTGAAAATCTCTAATACTTTAGAGGTAGAATTCATATTTTTAAAAAAGGTTAAGGCTAAATTTAAAATTTAGTCAAAGGATTTGGCTCTAACTAATATATTTAACATTTTTCATTTCTTTTGAGTTCATCAACCAATAGGGTGGTGTGCGTATTCGAGTTGCAAAATGAAAGCATGAGAACTACCCAAGTTAAGTGTCGAGCAAGCAAAATACTAGATAATATGTGCTTGTATTTATATGGAGAGTTTAATTATATAATTGGCTAATTAAAGAAATTATTATGTGGTTAAAATGAGACTTCAACTAGTTTAAGTTAAAAATGATAAATAATAGCTGAGAAATTATGTTTTACGACCTACCACTAAACTTTTGGTAGTTAGAAAAGAGAATAAGAGAGAACAAACACATTTTCTTTAAAAGCAAACATGTTCACAAACTTTTATTTCAGTTGAGTTATTTATGCTCATGTTCACAAATGTGCGTTAAAAACTTACTACTGGGAGAGTAGAATAATTTGAAATTATTTTCTAAAACATAATCATATTGTTAGGCATAGTTATTATAAAAGCTCTCTTTTATTATTTTGTTAGTACTATTATTAATAACCCTAATTAACTAATCATATATCTAGCACAAACATACTAAAGGTAAGAATTTGATCATGACTCAATTTCATTGCAGGTGAATATCTATGAGAGCTTTAAACAGGTAGTTCCGTGGAGACTGAAGAACAAAAGATAATCAAC TACTACTCACAATCTCTCTCACTCCCTACACTCACATCTATTTACTCATTTCTACCAACCCATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGGGCACTCTACCGTCGCCCACGACGGTGCTCGACGGCCCGGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGGCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTGAATATCTATGAGAGCTTTAAACAGGTAGTTCCGTGGAGACTGAAGAACAAAAGATAATCAAC ATGTGCTCGGAGCCGCCGCATACGGTGGAGACGACCTCTACTCCCACCCTACCTCTGTCTTCGCTTCCTCCGGAGCCGCCGTGGATGCCAACGCCGCCGCGTTTAACTTTGGCCTCCGTTCCCTTTCTGTGGGAGGAGGCGCCGGGGAAGCCGCGGCCATCCCCCGCATCGGAACTTCTATGGCGGGTGCCGGCGTTGAGGGAGCTGCCTCCGCCGCCGCGGCTTTTGAACGAAGCCAAACAGGGCACTCTACCGTCGCCCACGACGGTGCTCGACGGCCCGGAAAGGGCTGGCGACGGATCAAAGAGATGGGGTTCTTTTAGGATGTTTAAGGATTTCGTCGGTGGTAACGGCAACGACCCTTCGGGCACCGGTGTCGACGGCGGCGGCGGAAGCGGGAGGTTTAGAAGGAAAAGAACTTCATCATTGTCAGTTTCTTCTTATGCAAGATCACACTTCTTGGTGAATATCTATGAGAGCTTTAAACAGGTAGTTCCGTGGAGACTGAAGAACAAAAGATAA MCSEPPHTVETTSTPTLPLSSLPPEPPWMPTPPRLTLASVPFLWEEAPGKPRPSPASELLWRVPALRELPPPPRLLNEAKQGTLPSPTTVLDGPERAGDGSKRWGSFRMFKDFVGGNGNDPSGTGVDGGGGSGRFRRKRTSSLSVSSYARSHFLVNIYESFKQVVPWRLKNKR Homology
BLAST of CaUC01G000440 vs. NCBI nr
Match: XP_038875428.1 (uncharacterized protein LOC120067888 [Benincasa hispida]) HSP 1 Score: 247.7 bits (631), Expect = 7.5e-62 Identity = 129/156 (82.69%), Postives = 133/156 (85.26%), Query Frame = 0
BLAST of CaUC01G000440 vs. NCBI nr
Match: XP_022958693.1 (uncharacterized protein LOC111459844 [Cucurbita moschata]) HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57 Identity = 128/173 (73.99%), Postives = 137/173 (79.19%), Query Frame = 0
BLAST of CaUC01G000440 vs. NCBI nr
Match: XP_022995989.1 (uncharacterized protein At4g00950-like [Cucurbita maxima]) HSP 1 Score: 229.6 bits (584), Expect = 2.1e-56 Identity = 127/173 (73.41%), Postives = 137/173 (79.19%), Query Frame = 0
BLAST of CaUC01G000440 vs. NCBI nr
Match: KAG6605789.1 (hypothetical protein SDJN03_03106, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035754.1 hypothetical protein SDJN02_02552, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 228.8 bits (582), Expect = 3.6e-56 Identity = 127/173 (73.41%), Postives = 136/173 (78.61%), Query Frame = 0
BLAST of CaUC01G000440 vs. NCBI nr
Match: KAA0042546.1 (uncharacterized protein E6C27_scaffold44G00400 [Cucumis melo var. makuwa] >TYK05950.1 uncharacterized protein E5676_scaffold376G00430 [Cucumis melo var. makuwa]) HSP 1 Score: 200.7 bits (509), Expect = 1.0e-47 Identity = 122/180 (67.78%), Postives = 135/180 (75.00%), Query Frame = 0
BLAST of CaUC01G000440 vs. ExPASy TrEMBL
Match: A0A6J1H3S6 (uncharacterized protein LOC111459844 OS=Cucurbita moschata OX=3662 GN=LOC111459844 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 5.4e-58 Identity = 128/173 (73.99%), Postives = 137/173 (79.19%), Query Frame = 0
BLAST of CaUC01G000440 vs. ExPASy TrEMBL
Match: A0A6J1K7H0 (uncharacterized protein At4g00950-like OS=Cucurbita maxima OX=3661 GN=LOC111491336 PE=4 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 1.0e-56 Identity = 127/173 (73.41%), Postives = 137/173 (79.19%), Query Frame = 0
BLAST of CaUC01G000440 vs. ExPASy TrEMBL
Match: A0A5A7TKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00430 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 5.1e-48 Identity = 122/180 (67.78%), Postives = 135/180 (75.00%), Query Frame = 0
BLAST of CaUC01G000440 vs. ExPASy TrEMBL
Match: A0A1S3AU39 (uncharacterized protein LOC103482969 OS=Cucumis melo OX=3656 GN=LOC103482969 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 5.6e-47 Identity = 121/180 (67.22%), Postives = 134/180 (74.44%), Query Frame = 0
BLAST of CaUC01G000440 vs. ExPASy TrEMBL
Match: A0A0A0KJF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139380 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42 Identity = 115/188 (61.17%), Postives = 129/188 (68.62%), Query Frame = 0
BLAST of CaUC01G000440 vs. TAIR 10
Match: AT4G27810.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 78.2 bits (191), Expect = 7.3e-15 Identity = 72/191 (37.70%), Postives = 90/191 (47.12%), Query Frame = 0
BLAST of CaUC01G000440 vs. TAIR 10
Match: AT5G53030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 72.8 bits (177), Expect = 3.1e-13 Identity = 74/217 (34.10%), Postives = 92/217 (42.40%), Query Frame = 0
BLAST of CaUC01G000440 vs. TAIR 10
Match: AT5G53030.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 62.0 bits (149), Expect = 5.4e-10 Identity = 68/202 (33.66%), Postives = 83/202 (41.09%), Query Frame = 0
BLAST of CaUC01G000440 vs. TAIR 10
Match: AT5G51680.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 41.6 bits (96), Expect = 7.6e-04 Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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