CaUC01G000400 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G000400
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionImportin subunit beta-1
LocationCiama_Chr01: 283305 .. 283550 (+)
RNA-Seq ExpressionCaUC01G000400
SyntenyCaUC01G000400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTTGTATGGCTTGGTCGGTTCCAATTGTATCTCTGACTTGA

mRNA sequence

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTTGTATGGCTTGGTCGGTTCCAATTGTATCTCTGACTTGA

Coding sequence (CDS)

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTTGTATGGCTTGGTCGGTTCCAATTGTATCTCTGACTTGA

Protein sequence

MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIMKALLTIALAASSRDLVCHGRSGRRERPLAPPVCMAWSVPIVSLT
Homology
[Close]
BLAST of CaUC01G000400 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRRERPLAPPVCMAWSVPIVSLT 82
          GRRERPLAPPV +AWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of CaUC01G000400 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 6.9e-34
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GRRERPLAPPVCMAWSVPIVSLT 82
           G+RERPLAPPV +AWSVPIVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

[Close]
BLAST of CaUC01G000400 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRRERPLAPPVCMAWSVPIVSLT 82
          GRRERPLAPPV +AWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of CaUC01G000400 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GRRERPLAPPVCMAWSVPIVSLT 82
           G+RERPLAPPV +AWSVPIVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

The following BLAST results are available for this feature:
BLAST of CaUC01G000400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49854.13.1e-3495.18hypothetical protein Csa_000509 [Cucumis sativus][more]
KAA0042542.16.9e-3493.98importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ... [more]
BLAST of CaUC01G000400 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G000400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLW11.5e-3495.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1[more]
A0A5A7TGL23.3e-3493.98Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CaUC01G000400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G000400.1CaUC01G000400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006606 protein import into nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0031267 small GTPase binding