CaUC01G000160 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G000160
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr01: 98639 .. 100506 (-)
RNA-Seq ExpressionCaUC01G000160
SyntenyCaUC01G000160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTCCACTTATATAACCTTTTCTACACCCACTTGCTGGATTCCAGACTTCTTACTAGATTTCTACGAGCAACAAACCTAAACGAAGAAGGGGCCAATCACCTTCAGAACAGCCAACCTAACAGCCATATCTTGCACGCAGCTTGCACCTCTCTTTCAACCCGGGGCTCAGGTAAGGTGGGTTAAAGAAGGCCCTCCATCTCATAAAAAGATCGTTTAGGCCATAACAAGAGGAGGCAAAAAAACATATACACCAGCTTAGATGGTTAAGATTGAGCTAGTTCTTAGCAACTGCCAACTGTTACTTTGATACCTTGAGACCCATGTGCCAATCCCTTATAAGAGTCTCTACTTAGGACATTCCCGAAAGTTCAGTCCACAGCATAAAAGTATAAAAGGAAAAAGAAAAGAAAAGGAAACGATTCCCTTTCATCGTCAGATTGTTAGAACTGCTGTTTAATGCTTTGAAAGGCAAGATTCAGTTAAGTTTACAAATCAAATTTTAGCTCTATGAAGAACTAACTATATGGTATAGCTGAATCAAACCATTCCATTCACAAGTGAATGACAGTTTTTTCCATTAAGAATCTGATAGGCATGGCATTAGAGGGATATTAAGGGTATATTAGTAATTAGATAGAGTTTGTTAGGGAAGTTGGTTATAAATAGAGTGGATAGGGAAGAAGAGGGAAAACAATCTTTTGAAATATGAAGTAGGGCTTGAGAGTATCTCAAGATGGGGAGGGTTCAAGTACCTTGAACTTGGTTTATCTTGTATTTTCGTTATCGTTTATCTTTCAATATATTTGGGTTCTATCAGAATCGTGCATGCAAATGATATTATTTCTGCATGTTTATTTGCGACTGACGAGCCCTTGGAGCCTTAAACTTTGATGGTATTCTATTGAGAACAAGATAAACATTGGTAAGATTTCATTATTCTGCATTGCCGAATTATTATCTTGGGAAAAAACTTAGTATCAAGTCTGGCAATGGAAGGAAGTTGACACGTTTTTGTCCAATAGGCAATAATAAGTACATTGAAATATGCATTTTGGGCTAAGAGGTCATGGTTTCAATCCATTGTGTCTACCTACCTAGGTTTTGATATCCTATGAGTTTTCTTGACATCCAAATATTAGGCGGGTTGTCCTATGAGATTAGTCAAGGTGCATGTAAGCTAGTCCAGGTACTCATGGATATATATATATATATATATATATAAAAATAAATAAAAAAAAAAATAAAATAAAAAAAGTTCTGCATACATAACCCAGCTCAGCTGCTTGTAATGAGAATACATCATTACCATCTTTTGTCTATAATTTCTTCTGATTTCCAGTCCCAAGTTTCTATCACCCTTCTTGGTTGTTTGGTGAGGGAGGGAATGGAGGGGCGCCGGGATATAGCTCATGATAACTTTTTGTTTCCTAATGGTTATTCAGATGGGAGGGCTGCATGATTCTATGGAAAGTAGAATTTCGGCACTGGAAAAGCTGAACCAGAATGATGGTTCCCAACATGTTCAAGCAGCAGAGTAGAGACCCTGGAGACCAAGCCAGGACAGTCTGGAGGGCCTTCCTGGAAATATAAAGAACTTATGAAGAAAAATAACTGTAGAAAAACTGGTCTGCTTTGTATGCACATCAAGATGTTAAATTTTGCTTGGAAAATTTGTTTATTTAGTCTAATGATATTATTATCAGATGTAGGTTTGTACCGAGCTGGTCGCTAGTTATAATTTTACTGTGCTCATAGAAAATTCCCTAAAGTTGACGAGGCTGAATCTCCTGAATGAACTATCCCTCTGCTTGGGGAACACAGCCTTCATCCTTTTCTCTTTTCTTTTCGCCAAAGAGTTTGACGAA

mRNA sequence

TCTTTCCACTTATATAACCTTTTCTACACCCACTTGCTGGATTCCAGACTTCTTACTAGATTTCTACGAGCAACAAACCTAAACGAAGAAGGGGCCAATCACCTTCAGAACAGCCAACCTAACAGCCATATCTTGCACGCAGCTTGCACCTCTCTTTCAACCCGGGGCTCAGGTAAGATGGGAGGGCTGCATGATTCTATGGAAAGTAGAATTTCGGCACTGGAAAAGCTGAACCAGAATGATGGTTCCCAACATGTTTGTACCGAGCTGGTCGCTAGTTATAATTTTACTGTGCTCATAGAAAATTCCCTAAAGTTGACGAGGCTGAATCTCCTGAATGAACTATCCCTCTGCTTGGGGAACACAGCCTTCATCCTTTTCTCTTTTCTTTTCGCCAAAGAGTTTGACGAA

Coding sequence (CDS)

TCTTTCCACTTATATAACCTTTTCTACACCCACTTGCTGGATTCCAGACTTCTTACTAGATTTCTACGAGCAACAAACCTAAACGAAGAAGGGGCCAATCACCTTCAGAACAGCCAACCTAACAGCCATATCTTGCACGCAGCTTGCACCTCTCTTTCAACCCGGGGCTCAGGTAAGATGGGAGGGCTGCATGATTCTATGGAAAGTAGAATTTCGGCACTGGAAAAGCTGAACCAGAATGATGGTTCCCAACATGTTTGTACCGAGCTGGTCGCTAGTTATAATTTTACTGTGCTCATAGAAAATTCCCTAAAGTTGACGAGGCTGAATCTCCTGAATGAACTATCCCTCTGCTTGGGGAACACAGCCTTCATCCTTTTCTCTTTTCTTTTCGCCAAAGAGTTTGACGAA

Protein sequence

SFHLYNLFYTHLLDSRLLTRFLRATNLNEEGANHLQNSQPNSHILHAACTSLSTRGSGKMGGLHDSMESRISALEKLNQNDGSQHVCTELVASYNFTVLIENSLKLTRLNLLNELSLCLGNTAFILFSFLFAKEFDE
Homology
[Close]
BLAST of CaUC01G000160 vs. NCBI nr
Match: XP_023551615.1 (uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHV 87
          S KMGGLHDSMESRISALEKLNQNDGSQHV
Sbjct: 39 SQKMGGLHDSMESRISALEKLNQNDGSQHV 68

[Close]
BLAST of CaUC01G000160 vs. NCBI nr
Match: XP_022922390.1 (uncharacterized protein LOC111430397 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHV 87
          S KMGGLHDSMESRISALEKLNQNDGSQHV
Sbjct: 39 SQKMGGLHDSMESRISALEKLNQNDGSQHV 68

[Close]
BLAST of CaUC01G000160 vs. NCBI nr
Match: XP_022974358.1 (uncharacterized protein LOC111472986 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHV 87
          S KMGGLHDSMESRISALEKLNQNDGSQHV
Sbjct: 62 SQKMGGLHDSMESRISALEKLNQNDGSQHV 91

[Close]
BLAST of CaUC01G000160 vs. NCBI nr
Match: KAG7016796.1 (hypothetical protein SDJN02_21907, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHV 87
          S KMGGLHDSMESRISALEKLNQNDGSQHV
Sbjct: 39 SQKMGGLHDSMESRISALEKLNQNDGSQHV 68

[Close]
BLAST of CaUC01G000160 vs. NCBI nr
Match: XP_022138131.1 (uncharacterized protein LOC111009377 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-05
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHVCT 89
          S KMGGLHDS+ESRISALEKLNQNDGSQHV T
Sbjct: 39 SQKMGGLHDSLESRISALEKLNQNDGSQHVHT 70

[Close]
BLAST of CaUC01G000160 vs. ExPASy TrEMBL
Match: A0A6J1IFZ7 (uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHV 87
          S KMGGLHDSMESRISALEKLNQNDGSQHV
Sbjct: 62 SQKMGGLHDSMESRISALEKLNQNDGSQHV 91

[Close]
BLAST of CaUC01G000160 vs. ExPASy TrEMBL
Match: A0A6J1E8L7 (uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC111430397 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHV 87
          S KMGGLHDSMESRISALEKLNQNDGSQHV
Sbjct: 39 SQKMGGLHDSMESRISALEKLNQNDGSQHV 68

[Close]
BLAST of CaUC01G000160 vs. ExPASy TrEMBL
Match: A0A6J1C8U6 (uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009377 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHVCT 89
          S KMGGLHDS+ESRISALEKLNQNDGSQHV T
Sbjct: 39 SQKMGGLHDSLESRISALEKLNQNDGSQHVHT 70

[Close]
BLAST of CaUC01G000160 vs. ExPASy TrEMBL
Match: A0A1S3AUK7 (uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.2e-05
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 57 SGKMGGLHDSMESRISALEKLNQNDGSQHV 87
          S KMGGLHDSM SRISALEKLNQNDGSQHV
Sbjct: 39 SHKMGGLHDSMGSRISALEKLNQNDGSQHV 68

The following BLAST results are available for this feature:
BLAST of CaUC01G000160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023551615.12.3e-0596.67uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo][more]
XP_022922390.12.3e-0596.67uncharacterized protein LOC111430397 [Cucurbita moschata][more]
XP_022974358.12.3e-0596.67uncharacterized protein LOC111472986 [Cucurbita maxima][more]
KAG7016796.12.3e-0596.67hypothetical protein SDJN02_21907, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022138131.13.0e-0590.63uncharacterized protein LOC111009377 [Momordica charantia][more]
BLAST of CaUC01G000160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G000160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IFZ71.1e-0596.67uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986... [more]
A0A6J1E8L71.1e-0596.67uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC1114303... [more]
A0A6J1C8U61.4e-0590.63uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A1S3AUK77.2e-0593.33uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=... [more]
BLAST of CaUC01G000160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC01G000160.1CaUC01G000160.1mRNA